HEADER APOPTOSIS 22-MAY-13 4KVP TITLE HUMAN P53 CORE DOMAIN MUTANT V157F COMPND MOL_ID: 1; COMPND 2 MOLECULE: CELLULAR TUMOR ANTIGEN P53; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: P53 CORE DOMAIN; COMPND 5 SYNONYM: ANTIGEN NY-CO-13, PHOSPHOPROTEIN P53, TUMOR SUPPRESSOR P53; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: P53, TP53; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PSE420 KEYWDS TUMOR SUPPRESSOR PROTEIN P53, CANCER MUTATION, TUMOR, PROTEIN KEYWDS 2 STABILITY, MUTANT PROTEINS, APOPTOSIS EXPDTA X-RAY DIFFRACTION AUTHOR B.D.WALLENTINE,Y.WANG,H.LUECKE REVDAT 5 28-FEB-24 4KVP 1 REMARK SEQADV LINK REVDAT 4 17-JUL-19 4KVP 1 REMARK REVDAT 3 15-JAN-14 4KVP 1 JRNL REVDAT 2 02-OCT-13 4KVP 1 JRNL REVDAT 1 31-JUL-13 4KVP 0 SPRSDE 31-JUL-13 4KVP 2QXA JRNL AUTH B.D.WALLENTINE,Y.WANG,V.TRETYACHENKO-LADOKHINA,M.TAN, JRNL AUTH 2 D.F.SENEAR,H.LUECKE JRNL TITL STRUCTURES OF ONCOGENIC, SUPPRESSOR AND RESCUED P53 JRNL TITL 2 CORE-DOMAIN VARIANTS: MECHANISMS OF MUTANT P53 RESCUE. JRNL REF ACTA CRYSTALLOGR.,SECT.D V. 69 2146 2013 JRNL REFN ISSN 0907-4449 JRNL PMID 24100332 JRNL DOI 10.1107/S0907444913020830 REMARK 2 REMARK 2 RESOLUTION. 1.50 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ENGH & HUBER REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.50 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.35 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.580 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 3 NUMBER OF REFLECTIONS : 122776 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.210 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 7.340 REMARK 3 FREE R VALUE TEST SET COUNT : 9015 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 31.8412 - 4.0689 0.89 5847 652 0.1354 0.1697 REMARK 3 2 4.0689 - 3.2306 0.88 5661 677 0.1217 0.1700 REMARK 3 3 3.2306 - 2.8226 0.90 5769 607 0.1421 0.1987 REMARK 3 4 2.8226 - 2.5646 0.90 5795 609 0.1543 0.2032 REMARK 3 5 2.5646 - 2.3809 0.89 5643 669 0.1567 0.1978 REMARK 3 6 2.3809 - 2.2405 0.93 5915 352 0.1548 0.2211 REMARK 3 7 2.2405 - 2.1283 0.98 6224 9 0.1626 0.2122 REMARK 3 8 2.1283 - 2.0357 0.96 6067 104 0.1661 0.2278 REMARK 3 9 2.0357 - 1.9574 0.90 5667 482 0.1748 0.2112 REMARK 3 10 1.9574 - 1.8898 0.90 5723 401 0.1825 0.2241 REMARK 3 11 1.8898 - 1.8307 0.89 5693 426 0.1977 0.2392 REMARK 3 12 1.8307 - 1.7784 0.89 5609 430 0.2066 0.2494 REMARK 3 13 1.7784 - 1.7316 0.89 5644 399 0.2190 0.2519 REMARK 3 14 1.7316 - 1.6893 0.88 5548 445 0.2349 0.2877 REMARK 3 15 1.6893 - 1.6509 0.87 5548 449 0.2490 0.2827 REMARK 3 16 1.6509 - 1.6158 0.88 5543 402 0.2672 0.3259 REMARK 3 17 1.6158 - 1.5835 0.88 5522 428 0.2859 0.3205 REMARK 3 18 1.5835 - 1.5536 0.87 5513 439 0.2977 0.3104 REMARK 3 19 1.5536 - 1.5259 0.87 5491 451 0.3133 0.3416 REMARK 3 20 1.5259 - 1.5000 0.87 5461 456 0.3284 0.3486 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : NULL REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.920 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: 0.1200 REMARK 3 OPERATOR: H,-K,-L REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 6332 REMARK 3 ANGLE : 0.967 8603 REMARK 3 CHIRALITY : 0.069 928 REMARK 3 PLANARITY : 0.004 1144 REMARK 3 DIHEDRAL : 13.083 2419 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KVP COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 23-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079853. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 04-JUL-06 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL9-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SIDE-SCATTERING CUBEROOT I-BEAM REMARK 200 BENT SINGLE CRYSTAL; ASYMETRIC REMARK 200 CUT 12.2 DEGS REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 122776 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.480 REMARK 200 RESOLUTION RANGE LOW (A) : 84.215 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.6 REMARK 200 DATA REDUNDANCY : 3.330 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.48 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.53 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.1 REMARK 200 DATA REDUNDANCY IN SHELL : 3.01 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CNS REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.70 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.04 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2 MICROLITER PROTEIN SOLUTION (AROUND REMARK 280 5.0-7.0 MG/ML PROTEIN IN 20 MM TRIS, 150 MM NACL, 10 MM DTT) REMARK 280 WERE MIXED WITH 2 MICROLITER RESERVOIR BUFFER (25% (W/V) REMARK 280 POLYETHYLENE GLYCOL (PEG) 2000 MONOMETHYL ETHER (MME)), PH 7.6, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 35.13950 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 93 REMARK 465 SER A 94 REMARK 465 SER A 95 REMARK 465 ARG A 290 REMARK 465 LYS A 291 REMARK 465 LYS A 292 REMARK 465 GLY A 293 REMARK 465 GLU A 294 REMARK 465 PRO A 295 REMARK 465 HIS A 296 REMARK 465 HIS A 297 REMARK 465 GLU A 298 REMARK 465 LEU A 299 REMARK 465 PRO A 300 REMARK 465 PRO A 301 REMARK 465 GLY A 302 REMARK 465 SER A 303 REMARK 465 THR A 304 REMARK 465 LYS A 305 REMARK 465 ARG A 306 REMARK 465 ALA A 307 REMARK 465 LEU A 308 REMARK 465 PRO A 309 REMARK 465 ASN A 310 REMARK 465 ASN A 311 REMARK 465 THR A 312 REMARK 465 ALA B 93 REMARK 465 SER B 94 REMARK 465 SER B 95 REMARK 465 ARG B 290 REMARK 465 LYS B 291 REMARK 465 LYS B 292 REMARK 465 GLY B 293 REMARK 465 GLU B 294 REMARK 465 PRO B 295 REMARK 465 HIS B 296 REMARK 465 HIS B 297 REMARK 465 GLU B 298 REMARK 465 LEU B 299 REMARK 465 PRO B 300 REMARK 465 PRO B 301 REMARK 465 GLY B 302 REMARK 465 SER B 303 REMARK 465 THR B 304 REMARK 465 LYS B 305 REMARK 465 ARG B 306 REMARK 465 ALA B 307 REMARK 465 LEU B 308 REMARK 465 PRO B 309 REMARK 465 ASN B 310 REMARK 465 ASN B 311 REMARK 465 THR B 312 REMARK 465 ALA C 93 REMARK 465 SER C 94 REMARK 465 ARG C 290 REMARK 465 LYS C 291 REMARK 465 LYS C 292 REMARK 465 GLY C 293 REMARK 465 GLU C 294 REMARK 465 PRO C 295 REMARK 465 HIS C 296 REMARK 465 HIS C 297 REMARK 465 GLU C 298 REMARK 465 LEU C 299 REMARK 465 PRO C 300 REMARK 465 PRO C 301 REMARK 465 GLY C 302 REMARK 465 SER C 303 REMARK 465 THR C 304 REMARK 465 LYS C 305 REMARK 465 ARG C 306 REMARK 465 ALA C 307 REMARK 465 LEU C 308 REMARK 465 PRO C 309 REMARK 465 ASN C 310 REMARK 465 ASN C 311 REMARK 465 THR C 312 REMARK 465 ALA D 93 REMARK 465 SER D 94 REMARK 465 SER D 95 REMARK 465 ARG D 290 REMARK 465 LYS D 291 REMARK 465 LYS D 292 REMARK 465 GLY D 293 REMARK 465 GLU D 294 REMARK 465 PRO D 295 REMARK 465 HIS D 296 REMARK 465 HIS D 297 REMARK 465 GLU D 298 REMARK 465 LEU D 299 REMARK 465 PRO D 300 REMARK 465 PRO D 301 REMARK 465 GLY D 302 REMARK 465 SER D 303 REMARK 465 THR D 304 REMARK 465 LYS D 305 REMARK 465 ARG D 306 REMARK 465 ALA D 307 REMARK 465 LEU D 308 REMARK 465 PRO D 309 REMARK 465 ASN D 310 REMARK 465 ASN D 311 REMARK 465 THR D 312 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH B 616 O HOH B 686 2.08 REMARK 500 O HOH C 703 O HOH C 751 2.14 REMARK 500 OE1 GLU C 271 O HOH C 606 2.15 REMARK 500 O HOH B 571 O HOH B 616 2.16 REMARK 500 O HOH C 662 O HOH C 751 2.17 REMARK 500 O HOH D 633 O HOH D 700 2.18 REMARK 500 O HOH D 630 O HOH D 763 2.19 REMARK 500 O HOH A 595 O HOH A 607 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 609 O HOH D 738 2546 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 115 77.22 -103.15 REMARK 500 SER A 183 53.18 -90.05 REMARK 500 ALA B 138 14.97 58.92 REMARK 500 CYS C 242 108.68 -55.38 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 176 SG REMARK 620 2 HIS A 179 ND1 109.8 REMARK 620 3 CYS A 238 SG 112.2 101.8 REMARK 620 4 CYS A 242 SG 115.3 98.4 117.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS B 176 SG REMARK 620 2 HIS B 179 ND1 107.0 REMARK 620 3 CYS B 238 SG 112.1 101.0 REMARK 620 4 CYS B 242 SG 115.6 101.0 117.7 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN C 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS C 176 SG REMARK 620 2 HIS C 179 ND1 110.3 REMARK 620 3 CYS C 238 SG 110.5 100.4 REMARK 620 4 CYS C 242 SG 114.0 106.4 114.2 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN D 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS D 176 SG REMARK 620 2 HIS D 179 ND1 107.4 REMARK 620 3 CYS D 238 SG 111.3 111.1 REMARK 620 4 CYS D 242 SG 112.5 101.7 112.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN C 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN D 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2QXB RELATED DB: PDB REMARK 900 RELATED ID: 2QVQ RELATED DB: PDB DBREF 4KVP A 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 4KVP B 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 4KVP C 94 312 UNP P04637 P53_HUMAN 94 312 DBREF 4KVP D 94 312 UNP P04637 P53_HUMAN 94 312 SEQADV 4KVP ALA A 93 UNP P04637 EXPRESSION TAG SEQADV 4KVP PHE A 157 UNP P04637 VAL 157 ENGINEERED MUTATION SEQADV 4KVP ALA B 93 UNP P04637 EXPRESSION TAG SEQADV 4KVP PHE B 157 UNP P04637 VAL 157 ENGINEERED MUTATION SEQADV 4KVP ALA C 93 UNP P04637 EXPRESSION TAG SEQADV 4KVP PHE C 157 UNP P04637 VAL 157 ENGINEERED MUTATION SEQADV 4KVP ALA D 93 UNP P04637 EXPRESSION TAG SEQADV 4KVP PHE D 157 UNP P04637 VAL 157 ENGINEERED MUTATION SEQRES 1 A 220 ALA SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SEQRES 2 A 220 SER TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR SEQRES 3 A 220 ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN SEQRES 4 A 220 LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN SEQRES 5 A 220 LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG PHE SEQRES 6 A 220 ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR SEQRES 7 A 220 GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER SEQRES 8 A 220 ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG SEQRES 9 A 220 VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG SEQRES 10 A 220 ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO SEQRES 11 A 220 PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN SEQRES 12 A 220 TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG SEQRES 13 A 220 ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER SEQRES 14 A 220 GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL SEQRES 15 A 220 CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU SEQRES 16 A 220 ASN LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO SEQRES 17 A 220 PRO GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 B 220 ALA SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SEQRES 2 B 220 SER TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR SEQRES 3 B 220 ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN SEQRES 4 B 220 LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN SEQRES 5 B 220 LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG PHE SEQRES 6 B 220 ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR SEQRES 7 B 220 GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER SEQRES 8 B 220 ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG SEQRES 9 B 220 VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG SEQRES 10 B 220 ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO SEQRES 11 B 220 PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN SEQRES 12 B 220 TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG SEQRES 13 B 220 ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER SEQRES 14 B 220 GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL SEQRES 15 B 220 CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU SEQRES 16 B 220 ASN LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO SEQRES 17 B 220 PRO GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 C 220 ALA SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SEQRES 2 C 220 SER TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR SEQRES 3 C 220 ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN SEQRES 4 C 220 LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN SEQRES 5 C 220 LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG PHE SEQRES 6 C 220 ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR SEQRES 7 C 220 GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER SEQRES 8 C 220 ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG SEQRES 9 C 220 VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG SEQRES 10 C 220 ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO SEQRES 11 C 220 PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN SEQRES 12 C 220 TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG SEQRES 13 C 220 ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER SEQRES 14 C 220 GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL SEQRES 15 C 220 CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU SEQRES 16 C 220 ASN LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO SEQRES 17 C 220 PRO GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR SEQRES 1 D 220 ALA SER SER SER VAL PRO SER GLN LYS THR TYR GLN GLY SEQRES 2 D 220 SER TYR GLY PHE ARG LEU GLY PHE LEU HIS SER GLY THR SEQRES 3 D 220 ALA LYS SER VAL THR CYS THR TYR SER PRO ALA LEU ASN SEQRES 4 D 220 LYS MET PHE CYS GLN LEU ALA LYS THR CYS PRO VAL GLN SEQRES 5 D 220 LEU TRP VAL ASP SER THR PRO PRO PRO GLY THR ARG PHE SEQRES 6 D 220 ARG ALA MET ALA ILE TYR LYS GLN SER GLN HIS MET THR SEQRES 7 D 220 GLU VAL VAL ARG ARG CYS PRO HIS HIS GLU ARG CYS SER SEQRES 8 D 220 ASP SER ASP GLY LEU ALA PRO PRO GLN HIS LEU ILE ARG SEQRES 9 D 220 VAL GLU GLY ASN LEU ARG VAL GLU TYR LEU ASP ASP ARG SEQRES 10 D 220 ASN THR PHE ARG HIS SER VAL VAL VAL PRO TYR GLU PRO SEQRES 11 D 220 PRO GLU VAL GLY SER ASP CYS THR THR ILE HIS TYR ASN SEQRES 12 D 220 TYR MET CYS ASN SER SER CYS MET GLY GLY MET ASN ARG SEQRES 13 D 220 ARG PRO ILE LEU THR ILE ILE THR LEU GLU ASP SER SER SEQRES 14 D 220 GLY ASN LEU LEU GLY ARG ASN SER PHE GLU VAL ARG VAL SEQRES 15 D 220 CYS ALA CYS PRO GLY ARG ASP ARG ARG THR GLU GLU GLU SEQRES 16 D 220 ASN LEU ARG LYS LYS GLY GLU PRO HIS HIS GLU LEU PRO SEQRES 17 D 220 PRO GLY SER THR LYS ARG ALA LEU PRO ASN ASN THR HET ZN A 401 1 HET ZN B 401 1 HET ZN C 401 1 HET ZN D 401 1 HETNAM ZN ZINC ION FORMUL 5 ZN 4(ZN 2+) FORMUL 9 HOH *1035(H2 O) HELIX 1 1 GLN A 165 MET A 169 5 5 HELIX 2 2 CYS A 176 ARG A 181 1 6 HELIX 3 3 CYS A 277 GLU A 287 1 11 HELIX 4 4 GLN B 165 MET B 169 5 5 HELIX 5 5 CYS B 176 CYS B 182 1 7 HELIX 6 6 CYS B 277 LEU B 289 1 13 HELIX 7 7 GLN C 165 MET C 169 5 5 HELIX 8 8 CYS C 176 CYS C 182 1 7 HELIX 9 9 CYS C 277 LEU C 289 1 13 HELIX 10 10 GLN D 165 MET D 169 5 5 HELIX 11 11 CYS D 176 ARG D 181 1 6 HELIX 12 12 CYS D 277 ASN D 288 1 12 SHEET 1 A 4 ARG A 110 GLY A 112 0 SHEET 2 A 4 CYS A 141 TRP A 146 -1 O GLN A 144 N GLY A 112 SHEET 3 A 4 THR A 230 TYR A 236 -1 O THR A 230 N LEU A 145 SHEET 4 A 4 ILE A 195 GLU A 198 -1 N GLU A 198 O HIS A 233 SHEET 1 B 7 CYS A 124 SER A 127 0 SHEET 2 B 7 LYS A 132 CYS A 135 -1 O LYS A 132 N SER A 127 SHEET 3 B 7 LEU A 264 VAL A 274 1 O GLU A 271 N MET A 133 SHEET 4 B 7 ILE A 251 GLU A 258 -1 N LEU A 257 O LEU A 265 SHEET 5 B 7 ARG A 156 TYR A 163 -1 N MET A 160 O ILE A 254 SHEET 6 B 7 HIS A 214 PRO A 219 -1 O VAL A 218 N PHE A 157 SHEET 7 B 7 GLU A 204 ASP A 207 -1 N GLU A 204 O VAL A 217 SHEET 1 C 4 ARG B 110 GLY B 112 0 SHEET 2 C 4 CYS B 141 TRP B 146 -1 O TRP B 146 N ARG B 110 SHEET 3 C 4 THR B 230 TYR B 236 -1 O ILE B 232 N VAL B 143 SHEET 4 C 4 ILE B 195 GLU B 198 -1 N GLU B 198 O HIS B 233 SHEET 1 D 7 CYS B 124 SER B 127 0 SHEET 2 D 7 LYS B 132 CYS B 135 -1 O LYS B 132 N SER B 127 SHEET 3 D 7 LEU B 264 VAL B 274 1 O GLU B 271 N MET B 133 SHEET 4 D 7 ILE B 251 GLU B 258 -1 N LEU B 257 O LEU B 265 SHEET 5 D 7 ARG B 156 TYR B 163 -1 N MET B 160 O ILE B 254 SHEET 6 D 7 HIS B 214 PRO B 219 -1 O VAL B 216 N ALA B 159 SHEET 7 D 7 GLU B 204 ASP B 207 -1 N GLU B 204 O VAL B 217 SHEET 1 E 4 ARG C 110 GLY C 112 0 SHEET 2 E 4 CYS C 141 TRP C 146 -1 O GLN C 144 N GLY C 112 SHEET 3 E 4 THR C 230 TYR C 236 -1 O THR C 230 N LEU C 145 SHEET 4 E 4 ILE C 195 VAL C 197 -1 N ARG C 196 O ASN C 235 SHEET 1 F 7 CYS C 124 SER C 127 0 SHEET 2 F 7 LYS C 132 CYS C 135 -1 O PHE C 134 N THR C 125 SHEET 3 F 7 LEU C 264 VAL C 274 1 O GLU C 271 N MET C 133 SHEET 4 F 7 ILE C 251 GLU C 258 -1 N LEU C 257 O LEU C 265 SHEET 5 F 7 ARG C 156 TYR C 163 -1 N MET C 160 O ILE C 254 SHEET 6 F 7 HIS C 214 PRO C 219 -1 O VAL C 216 N ALA C 159 SHEET 7 F 7 GLU C 204 ASP C 207 -1 N GLU C 204 O VAL C 217 SHEET 1 G 4 ARG D 110 GLY D 112 0 SHEET 2 G 4 CYS D 141 TRP D 146 -1 O TRP D 146 N ARG D 110 SHEET 3 G 4 THR D 230 TYR D 236 -1 O THR D 230 N LEU D 145 SHEET 4 G 4 ILE D 195 VAL D 197 -1 N ARG D 196 O ASN D 235 SHEET 1 H 7 CYS D 124 SER D 127 0 SHEET 2 H 7 LYS D 132 CYS D 135 -1 O LYS D 132 N SER D 127 SHEET 3 H 7 LEU D 264 VAL D 274 1 O GLU D 271 N MET D 133 SHEET 4 H 7 ILE D 251 GLU D 258 -1 N LEU D 257 O LEU D 265 SHEET 5 H 7 ARG D 156 TYR D 163 -1 N MET D 160 O ILE D 254 SHEET 6 H 7 HIS D 214 PRO D 219 -1 O VAL D 216 N ALA D 159 SHEET 7 H 7 GLU D 204 ASP D 207 -1 N GLU D 204 O VAL D 217 LINK SG CYS A 176 ZN ZN A 401 1555 1555 2.32 LINK ND1 HIS A 179 ZN ZN A 401 1555 1555 2.00 LINK SG CYS A 238 ZN ZN A 401 1555 1555 2.41 LINK SG CYS A 242 ZN ZN A 401 1555 1555 2.38 LINK SG CYS B 176 ZN ZN B 401 1555 1555 2.36 LINK ND1 HIS B 179 ZN ZN B 401 1555 1555 1.91 LINK SG CYS B 238 ZN ZN B 401 1555 1555 2.35 LINK SG CYS B 242 ZN ZN B 401 1555 1555 2.28 LINK SG CYS C 176 ZN ZN C 401 1555 1555 2.39 LINK ND1 HIS C 179 ZN ZN C 401 1555 1555 1.97 LINK SG CYS C 238 ZN ZN C 401 1555 1555 2.32 LINK SG CYS C 242 ZN ZN C 401 1555 1555 2.32 LINK SG CYS D 176 ZN ZN D 401 1555 1555 2.35 LINK ND1 HIS D 179 ZN ZN D 401 1555 1555 1.99 LINK SG CYS D 238 ZN ZN D 401 1555 1555 2.35 LINK SG CYS D 242 ZN ZN D 401 1555 1555 2.44 SITE 1 AC1 4 CYS A 176 HIS A 179 CYS A 238 CYS A 242 SITE 1 AC2 4 CYS B 176 HIS B 179 CYS B 238 CYS B 242 SITE 1 AC3 4 CYS C 176 HIS C 179 CYS C 238 CYS C 242 SITE 1 AC4 4 CYS D 176 HIS D 179 CYS D 238 CYS D 242 CRYST1 68.656 70.279 83.559 90.00 90.06 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014565 0.000000 0.000015 0.00000 SCALE2 0.000000 0.014229 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011968 0.00000