HEADER OXIDOREDUCTASE 23-MAY-13 4KVS TITLE CRYSTAL STRUCTURE OF PROCHLOROCOCCUS MARINUS ALDEHYDE-DEFORMYLATING TITLE 2 OXYGENASE (MUTANT A134F) COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDEHYDE DECARBONYLASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: AD, FATTY ALDEHYDE DECARBONYLASE; COMPND 5 EC: 4.1.99.5; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PROCHLOROCOCCUS MARINUS; SOURCE 3 ORGANISM_TAXID: 74547; SOURCE 4 STRAIN: MIT 9313; SOURCE 5 GENE: PMT_1231; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 KEYWDS PROPANE PRODUCTION, ALDEHYDE-DEFORMYLATING OXYGENASE, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR C.W.LEVY,B.KHARA,N.MENON,D.MANSELL,D.DAS,E.N.G.MARSH,D.LEYS, AUTHOR 2 N.S.SCRUTTON REVDAT 4 28-FEB-24 4KVS 1 REMARK SEQADV LINK REVDAT 3 28-AUG-13 4KVS 1 JRNL REVDAT 2 24-JUL-13 4KVS 1 JRNL REVDAT 1 26-JUN-13 4KVS 0 JRNL AUTH B.KHARA,N.MENON,C.LEVY,D.MANSELL,D.DAS,E.N.MARSH,D.LEYS, JRNL AUTH 2 N.S.SCRUTTON JRNL TITL PRODUCTION OF PROPANE AND OTHER SHORT-CHAIN ALKANES BY JRNL TITL 2 STRUCTURE-BASED ENGINEERING OF LIGAND SPECIFICITY IN JRNL TITL 3 ALDEHYDE-DEFORMYLATING OXYGENASE. JRNL REF CHEMBIOCHEM V. 14 1204 2013 JRNL REFN ISSN 1439-4227 JRNL PMID 23757044 JRNL DOI 10.1002/CBIC.201300307 REMARK 2 REMARK 2 RESOLUTION. 1.67 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.67 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 54.49 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.910 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 41207 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.186 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 2071 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 54.5186 - 4.1181 1.00 2853 135 0.1745 0.1619 REMARK 3 2 4.1181 - 3.2687 1.00 2686 137 0.1688 0.1616 REMARK 3 3 3.2687 - 2.8556 1.00 2640 142 0.1828 0.1890 REMARK 3 4 2.8556 - 2.5945 1.00 2625 132 0.1796 0.2069 REMARK 3 5 2.5945 - 2.4085 1.00 2588 142 0.1771 0.2084 REMARK 3 6 2.4085 - 2.2665 1.00 2595 142 0.1740 0.1638 REMARK 3 7 2.2665 - 2.1530 1.00 2584 151 0.1702 0.1692 REMARK 3 8 2.1530 - 2.0593 1.00 2606 130 0.1817 0.1921 REMARK 3 9 2.0593 - 1.9800 1.00 2571 128 0.1887 0.2435 REMARK 3 10 1.9800 - 1.9117 1.00 2587 126 0.1953 0.2107 REMARK 3 11 1.9117 - 1.8519 1.00 2562 149 0.1979 0.2560 REMARK 3 12 1.8519 - 1.7990 1.00 2544 158 0.2010 0.2335 REMARK 3 13 1.7990 - 1.7516 1.00 2549 132 0.2166 0.2827 REMARK 3 14 1.7516 - 1.7089 1.00 2560 139 0.2124 0.2262 REMARK 3 15 1.7089 - 1.6700 1.00 2586 128 0.2221 0.2311 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.150 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 17.950 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 1842 REMARK 3 ANGLE : 1.031 2504 REMARK 3 CHIRALITY : 0.068 274 REMARK 3 PLANARITY : 0.004 325 REMARK 3 DIHEDRAL : 12.890 699 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KVS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079856. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I02 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 41207 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.670 REMARK 200 RESOLUTION RANGE LOW (A) : 54.490 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.67 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.73 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 60.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.15 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SPG BUFFER, AND 25 % W/V PEG REMARK 280 1500 DROP SIZE 200NL PLUS 200NL , PH 7.4, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.93000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 38.53000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 38.53000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 86.89500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 38.53000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 38.53000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 28.96500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 38.53000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 38.53000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 86.89500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 38.53000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 38.53000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 28.96500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.93000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1840 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18270 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: 0.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 582 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 LEU A 4 REMARK 465 GLU A 5 REMARK 465 MET A 6 REMARK 465 PRO A 7 REMARK 465 VAL A 8 REMARK 465 ALA A 9 REMARK 465 ALA A 10 REMARK 465 VAL A 11 REMARK 465 LEU A 12 REMARK 465 ASP A 13 REMARK 465 SER A 14 REMARK 465 THR A 15 REMARK 465 VAL A 16 REMARK 465 GLY A 17 REMARK 465 SER A 18 REMARK 465 SER A 19 REMARK 465 GLU A 20 REMARK 465 VAL A 242 REMARK 465 SER A 243 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 543 O HOH A 625 1.85 REMARK 500 O HOH A 476 O HOH A 628 1.94 REMARK 500 O HOH A 654 O HOH A 667 1.97 REMARK 500 O HOH A 627 O HOH A 650 2.04 REMARK 500 O HOH A 574 O HOH A 622 2.07 REMARK 500 O HOH A 653 O HOH A 660 2.08 REMARK 500 O HOH A 526 O HOH A 679 2.09 REMARK 500 OE2 GLU A 45 OH TYR A 135 2.10 REMARK 500 OE1 GLN A 113 O HOH A 507 2.10 REMARK 500 O HOH A 551 O HOH A 577 2.11 REMARK 500 O HOH A 545 O HOH A 586 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 664 O HOH A 677 5444 2.15 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 125 -62.32 -105.22 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 302 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 45 OE1 REMARK 620 2 GLU A 73 OE1 86.2 REMARK 620 3 HIS A 76 ND1 92.2 92.8 REMARK 620 4 GLU A 157 OE2 123.6 150.1 84.6 REMARK 620 5 GLU A 157 OE1 172.4 95.7 95.1 55.1 REMARK 620 6 6NA A 301 O 84.4 97.9 168.6 88.3 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 FE A 303 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 73 OE2 REMARK 620 2 GLU A 128 OE2 96.8 REMARK 620 3 GLU A 128 OE1 154.0 57.9 REMARK 620 4 GLU A 157 OE1 116.3 144.7 89.6 REMARK 620 5 HIS A 160 ND1 81.3 89.0 102.1 84.5 REMARK 620 6 6NA A 301 OXT 91.6 78.4 78.5 110.7 164.8 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 6NA A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FE A 303 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 2OC5 RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF A FERRITIN-LIKE PROTEIN (PMT1231) FROM REMARK 900 PROCHLOROCOCCUS MARINUS STR. MIT 9313 AT 1.68 A RESOLUTION REMARK 900 RELATED ID: 4KVQ RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROCHLOROCOCCUS MARINUS ALDEHYDE-DEFORMYLATING REMARK 900 OXYGENASE WILD TYPE WITH PALMITIC ACID BOUND REMARK 900 RELATED ID: 4KVR RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF PROCHLOROCOCCUS MARINUS ALDEHYDE-DEFORMYLATING REMARK 900 OXYGENASE (MUTANT V41Y) DBREF 4KVS A 1 243 UNP Q7V6D4 ALDEC_PROMM 1 243 SEQADV 4KVS GLY A 0 UNP Q7V6D4 EXPRESSION TAG SEQADV 4KVS PHE A 134 UNP Q7V6D4 ALA 134 ENGINEERED MUTATION SEQRES 1 A 244 GLY MET PRO THR LEU GLU MET PRO VAL ALA ALA VAL LEU SEQRES 2 A 244 ASP SER THR VAL GLY SER SER GLU ALA LEU PRO ASP PHE SEQRES 3 A 244 THR SER ASP ARG TYR LYS ASP ALA TYR SER ARG ILE ASN SEQRES 4 A 244 ALA ILE VAL ILE GLU GLY GLU GLN GLU ALA HIS ASP ASN SEQRES 5 A 244 TYR ILE ALA ILE GLY THR LEU LEU PRO ASP HIS VAL GLU SEQRES 6 A 244 GLU LEU LYS ARG LEU ALA LYS MET GLU MET ARG HIS LYS SEQRES 7 A 244 LYS GLY PHE THR ALA CYS GLY LYS ASN LEU GLY VAL GLU SEQRES 8 A 244 ALA ASP MET ASP PHE ALA ARG GLU PHE PHE ALA PRO LEU SEQRES 9 A 244 ARG ASP ASN PHE GLN THR ALA LEU GLY GLN GLY LYS THR SEQRES 10 A 244 PRO THR CYS LEU LEU ILE GLN ALA LEU LEU ILE GLU ALA SEQRES 11 A 244 PHE ALA ILE SER PHE TYR HIS THR TYR ILE PRO VAL SER SEQRES 12 A 244 ASP PRO PHE ALA ARG LYS ILE THR GLU GLY VAL VAL LYS SEQRES 13 A 244 ASP GLU TYR THR HIS LEU ASN TYR GLY GLU ALA TRP LEU SEQRES 14 A 244 LYS ALA ASN LEU GLU SER CYS ARG GLU GLU LEU LEU GLU SEQRES 15 A 244 ALA ASN ARG GLU ASN LEU PRO LEU ILE ARG ARG MET LEU SEQRES 16 A 244 ASP GLN VAL ALA GLY ASP ALA ALA VAL LEU GLN MET ASP SEQRES 17 A 244 LYS GLU ASP LEU ILE GLU ASP PHE LEU ILE ALA TYR GLN SEQRES 18 A 244 GLU SER LEU THR GLU ILE GLY PHE ASN THR ARG GLU ILE SEQRES 19 A 244 THR ARG MET ALA ALA ALA ALA LEU VAL SER HET 6NA A 301 8 HET FE A 302 1 HET FE A 303 1 HETNAM 6NA HEXANOIC ACID HETNAM FE FE (III) ION FORMUL 2 6NA C6 H12 O2 FORMUL 3 FE 2(FE 3+) FORMUL 5 HOH *283(H2 O) HELIX 1 1 SER A 27 LEU A 59 1 33 HELIX 2 2 HIS A 62 LEU A 87 1 26 HELIX 3 3 ASP A 92 GLN A 113 1 22 HELIX 4 4 LYS A 115 LEU A 125 1 11 HELIX 5 5 LEU A 125 ILE A 139 1 15 HELIX 6 6 PRO A 140 SER A 142 5 3 HELIX 7 7 ASP A 143 LEU A 204 1 62 HELIX 8 8 ASP A 207 GLY A 227 1 21 HELIX 9 9 ASN A 229 ALA A 239 1 11 LINK OE1 GLU A 45 FE FE A 302 1555 1555 2.03 LINK OE1 GLU A 73 FE FE A 302 1555 1555 1.92 LINK OE2 GLU A 73 FE FE A 303 1555 1555 2.04 LINK ND1 HIS A 76 FE FE A 302 1555 1555 2.33 LINK OE2 GLU A 128 FE FE A 303 1555 1555 2.23 LINK OE1 GLU A 128 FE FE A 303 1555 1555 2.28 LINK OE2 GLU A 157 FE FE A 302 1555 1555 2.00 LINK OE1 GLU A 157 FE FE A 302 1555 1555 2.58 LINK OE1 GLU A 157 FE FE A 303 1555 1555 2.11 LINK ND1 HIS A 160 FE FE A 303 1555 1555 2.28 LINK O 6NA A 301 FE FE A 302 1555 1555 2.06 LINK OXT 6NA A 301 FE FE A 303 1555 1555 2.45 SITE 1 AC1 11 GLY A 44 GLU A 45 ALA A 48 GLU A 73 SITE 2 AC1 11 GLN A 123 ILE A 127 GLU A 128 ALA A 131 SITE 3 AC1 11 GLU A 157 FE A 302 FE A 303 SITE 1 AC2 6 GLU A 45 GLU A 73 HIS A 76 GLU A 157 SITE 2 AC2 6 6NA A 301 FE A 303 SITE 1 AC3 6 GLU A 73 GLU A 128 GLU A 157 HIS A 160 SITE 2 AC3 6 6NA A 301 FE A 302 CRYST1 77.060 77.060 115.860 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012977 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012977 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008631 0.00000