data_4KW0 # _entry.id 4KW0 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.379 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4KW0 pdb_00004kw0 10.2210/pdb4kw0/pdb NDB NA2479 ? ? RCSB RCSB079864 ? ? WWPDB D_1000079864 ? ? # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4KW0 _pdbx_database_status.recvd_initial_deposition_date 2013-05-23 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_nmr_data ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Jiang, S.' 1 'Gan, J.' 2 'Sheng, J.' 3 'Sun, H.' 4 'Huang, Z.' 5 # _citation.id primary _citation.title ;Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification ; _citation.journal_abbrev 'TO BE PUBLISHED' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Jiang, S.' 1 ? primary 'Gan, J.' 2 ? primary 'Sheng, J.' 3 ? primary 'Sun, H.' 4 ? primary 'Huang, Z.' 5 ? # _cell.entry_id 4KW0 _cell.length_a 25.780 _cell.length_b 39.893 _cell.length_c 65.690 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4KW0 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer syn ;DNA (5'-D(*CP*GP*CP*GP*AP*AP*TP*TP*CP*(1TW)P*CP*G)-3') ; 3756.379 2 ? ? ? ? 2 non-polymer syn 'MAGNESIUM ION' 24.305 1 ? ? ? ? 3 water nat water 18.015 89 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type polydeoxyribonucleotide _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code '(DC)(DG)(DC)(DG)(DA)(DA)(DT)(DT)(DC)(1TW)(DC)(DG)' _entity_poly.pdbx_seq_one_letter_code_can CGCGAATTCXCG _entity_poly.pdbx_strand_id A,B _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 DC n 1 2 DG n 1 3 DC n 1 4 DG n 1 5 DA n 1 6 DA n 1 7 DT n 1 8 DT n 1 9 DC n 1 10 1TW n 1 11 DC n 1 12 DG n # _struct_ref.id 1 _struct_ref.db_name PDB _struct_ref.db_code 4KW0 _struct_ref.pdbx_db_accession 4KW0 _struct_ref.entity_id 1 _struct_ref.pdbx_align_begin ? _struct_ref.pdbx_seq_one_letter_code ? _struct_ref.pdbx_db_isoform ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4KW0 A 1 ? 12 ? 4KW0 1 ? 12 ? 1 12 2 1 4KW0 B 1 ? 12 ? 4KW0 13 ? 24 ? 13 24 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 1TW 'DNA linking' . '2-amino-9-(2-Se-methyl-5-O-phosphono-2-seleno-beta-D-arabinofuranosyl)-1,9-dihydro-6H-purin-6-one' ? 'C11 H16 N5 O7 P Se' 440.208 DA 'DNA linking' y "2'-DEOXYADENOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O6 P' 331.222 DC 'DNA linking' y "2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE" ? 'C9 H14 N3 O7 P' 307.197 DG 'DNA linking' y "2'-DEOXYGUANOSINE-5'-MONOPHOSPHATE" ? 'C10 H14 N5 O7 P' 347.221 DT 'DNA linking' y "THYMIDINE-5'-MONOPHOSPHATE" ? 'C10 H15 N2 O8 P' 322.208 HOH non-polymer . WATER ? 'H2 O' 18.015 MG non-polymer . 'MAGNESIUM ION' ? 'Mg 2' 24.305 # _exptl.entry_id 4KW0 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 2 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.25 _exptl_crystal.density_percent_sol 45.29 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 298 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_details ;10% v/v MPD, 40 mM Sodium Cacodylate, 12 mM Spermine tetra-HCl, 80 mM Sodium Chloride, 20 mM Magnesium Chloride, pH 7.0, VAPOR DIFFUSION, HANGING DROP, temperature 298K ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'ADSC QUANTUM 315r' _diffrn_detector.pdbx_collection_date 2011-09-02 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'Double crystal, Si(111)' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.969 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 8.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 8.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.969 # _reflns.entry_id 4KW0 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 15.00 _reflns.d_resolution_high 1.49 _reflns.number_obs 10484 _reflns.number_all 11577 _reflns.percent_possible_obs 0.9056 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.075 _reflns.pdbx_netI_over_sigmaI 14.75 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 5.1 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.49 _reflns_shell.d_res_low 1.54 _reflns_shell.percent_possible_all 0.892 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.620 _reflns_shell.meanI_over_sigI_obs 2.93 _reflns_shell.pdbx_redundancy 3.8 _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all 1003 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4KW0 _refine.ls_number_reflns_obs 9973 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F ? _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 15.00 _refine.ls_d_res_high 1.49 _refine.ls_percent_reflns_obs 90.42 _refine.ls_R_factor_obs 0.20473 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.20279 _refine.ls_R_factor_R_free 0.24420 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 4.9 _refine.ls_number_reflns_R_free 511 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc 0.939 _refine.correlation_coeff_Fo_to_Fc_free 0.916 _refine.B_iso_mean 26.054 _refine.aniso_B[1][1] 1.27 _refine.aniso_B[2][2] -0.57 _refine.aniso_B[3][3] -0.69 _refine.aniso_B[1][2] 0.00 _refine.aniso_B[1][3] 0.00 _refine.aniso_B[2][3] 0.00 _refine.solvent_model_details MASK _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.40 _refine.pdbx_solvent_ion_probe_radii 0.80 _refine.pdbx_solvent_shrinkage_radii 0.80 _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS' _refine.pdbx_starting_model 1BNA _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R 0.112 _refine.pdbx_overall_ESU_R_Free 0.093 _refine.overall_SU_ML 0.053 _refine.pdbx_overall_phase_error ? _refine.overall_SU_B 3.172 _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 0 _refine_hist.pdbx_number_atoms_nucleic_acid 490 _refine_hist.pdbx_number_atoms_ligand 1 _refine_hist.number_atoms_solvent 89 _refine_hist.number_atoms_total 580 _refine_hist.d_res_high 1.49 _refine_hist.d_res_low 15.00 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 0.007 0.021 ? 548 ? 'X-RAY DIFFRACTION' r_bond_other_d ? ? ? ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 1.924 3.000 ? 842 ? 'X-RAY DIFFRACTION' r_angle_other_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg ? ? ? ? ? 'X-RAY DIFFRACTION' r_chiral_restr 0.064 0.200 ? 94 ? 'X-RAY DIFFRACTION' r_gen_planes_refined 0.012 0.020 ? 252 ? 'X-RAY DIFFRACTION' r_gen_planes_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_nbtor_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_xyhbond_nbd_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_vdw_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_hbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_refined ? ? ? ? ? 'X-RAY DIFFRACTION' r_symmetry_metal_ion_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcbond_other ? ? ? ? ? 'X-RAY DIFFRACTION' r_mcangle_it ? ? ? ? ? 'X-RAY DIFFRACTION' r_scbond_it 2.044 3.000 ? 548 ? 'X-RAY DIFFRACTION' r_scangle_it 2.999 4.500 ? 842 ? 'X-RAY DIFFRACTION' r_rigid_bond_restr 1.208 3.000 ? 548 ? 'X-RAY DIFFRACTION' r_sphericity_free ? ? ? ? ? 'X-RAY DIFFRACTION' r_sphericity_bonded ? ? ? ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.d_res_high 1.491 _refine_ls_shell.d_res_low 1.530 _refine_ls_shell.number_reflns_R_work 688 _refine_ls_shell.R_factor_R_work 0.256 _refine_ls_shell.percent_reflns_obs 85.60 _refine_ls_shell.R_factor_R_free 0.309 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 43 _refine_ls_shell.number_reflns_all ? _refine_ls_shell.R_factor_all ? _refine_ls_shell.number_reflns_obs ? _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4KW0 _struct.title ;Structure of Dickerson-Drew Dodecamer with 2'-MeSe-ara-G modification ; _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4KW0 _struct_keywords.pdbx_keywords DNA _struct_keywords.text ;B-DNA, 2'-MeSe-arabinosyl-deoxyguanosine, DNA ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 1 ? C N N 2 ? D N N 3 ? E N N 3 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order _struct_conn.pdbx_role covale1 covale both ? A DC 9 "O3'" ? ? ? 1_555 A 1TW 10 P ? ? A DC 9 A 1TW 10 1_555 ? ? ? ? ? ? ? 1.600 ? ? covale2 covale one ? A 1TW 10 "O3'" ? ? ? 1_555 A DC 11 P ? ? A 1TW 10 A DC 11 1_555 ? ? ? ? ? ? ? 1.596 ? ? covale3 covale both ? B DC 9 "O3'" ? ? ? 1_555 B 1TW 10 P ? ? B DC 21 B 1TW 22 1_555 ? ? ? ? ? ? ? 1.595 ? ? covale4 covale one ? B 1TW 10 "O3'" ? ? ? 1_555 B DC 11 P ? ? B 1TW 22 B DC 23 1_555 ? ? ? ? ? ? ? 1.595 ? ? metalc1 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 228 1_555 ? ? ? ? ? ? ? 2.096 ? ? metalc2 metalc ? ? C MG . MG ? ? ? 1_555 D HOH . O ? ? A MG 101 A HOH 229 1_555 ? ? ? ? ? ? ? 2.036 ? ? metalc3 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 B HOH 102 1_555 ? ? ? ? ? ? ? 2.008 ? ? metalc4 metalc ? ? C MG . MG ? ? ? 1_555 E HOH . O ? ? A MG 101 B HOH 116 1_555 ? ? ? ? ? ? ? 2.060 ? ? hydrog1 hydrog ? ? A DC 1 N3 ? ? ? 1_555 B DG 12 N1 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog2 hydrog ? ? A DC 1 N4 ? ? ? 1_555 B DG 12 O6 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog3 hydrog ? ? A DC 1 O2 ? ? ? 1_555 B DG 12 N2 ? ? A DC 1 B DG 24 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog4 hydrog ? ? A DG 2 N1 ? ? ? 1_555 B DC 11 N3 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog5 hydrog ? ? A DG 2 N2 ? ? ? 1_555 B DC 11 O2 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog6 hydrog ? ? A DG 2 O6 ? ? ? 1_555 B DC 11 N4 ? ? A DG 2 B DC 23 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog7 hydrog ? ? A DC 3 N3 ? ? ? 1_555 B 1TW 10 N1 ? ? A DC 3 B 1TW 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog8 hydrog ? ? A DC 3 N4 ? ? ? 1_555 B 1TW 10 O6 ? ? A DC 3 B 1TW 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog9 hydrog ? ? A DC 3 O2 ? ? ? 1_555 B 1TW 10 N2 ? ? A DC 3 B 1TW 22 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog10 hydrog ? ? A DG 4 N1 ? ? ? 1_555 B DC 9 N3 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog11 hydrog ? ? A DG 4 N2 ? ? ? 1_555 B DC 9 O2 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog12 hydrog ? ? A DG 4 O6 ? ? ? 1_555 B DC 9 N4 ? ? A DG 4 B DC 21 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog13 hydrog ? ? A DA 5 N1 ? ? ? 1_555 B DT 8 N3 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog14 hydrog ? ? A DA 5 N6 ? ? ? 1_555 B DT 8 O4 ? ? A DA 5 B DT 20 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog15 hydrog ? ? A DA 6 N1 ? ? ? 1_555 B DT 7 N3 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog16 hydrog ? ? A DA 6 N6 ? ? ? 1_555 B DT 7 O4 ? ? A DA 6 B DT 19 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog17 hydrog ? ? A DT 7 N3 ? ? ? 1_555 B DA 6 N1 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog18 hydrog ? ? A DT 7 O4 ? ? ? 1_555 B DA 6 N6 ? ? A DT 7 B DA 18 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog19 hydrog ? ? A DT 8 N3 ? ? ? 1_555 B DA 5 N1 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog20 hydrog ? ? A DT 8 O4 ? ? ? 1_555 B DA 5 N6 ? ? A DT 8 B DA 17 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog21 hydrog ? ? A DC 9 N3 ? ? ? 1_555 B DG 4 N1 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog22 hydrog ? ? A DC 9 N4 ? ? ? 1_555 B DG 4 O6 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog23 hydrog ? ? A DC 9 O2 ? ? ? 1_555 B DG 4 N2 ? ? A DC 9 B DG 16 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog24 hydrog ? ? A 1TW 10 N1 ? ? ? 1_555 B DC 3 N3 ? ? A 1TW 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog25 hydrog ? ? A 1TW 10 N2 ? ? ? 1_555 B DC 3 O2 ? ? A 1TW 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog26 hydrog ? ? A 1TW 10 O6 ? ? ? 1_555 B DC 3 N4 ? ? A 1TW 10 B DC 15 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog27 hydrog ? ? A DC 11 N3 ? ? ? 1_555 B DG 2 N1 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog28 hydrog ? ? A DC 11 N4 ? ? ? 1_555 B DG 2 O6 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog29 hydrog ? ? A DC 11 O2 ? ? ? 1_555 B DG 2 N2 ? ? A DC 11 B DG 14 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog30 hydrog ? ? A DG 12 N1 ? ? ? 1_555 B DC 1 N3 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog31 hydrog ? ? A DG 12 N2 ? ? ? 1_555 B DC 1 O2 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? hydrog32 hydrog ? ? A DG 12 O6 ? ? ? 1_555 B DC 1 N4 ? ? A DG 12 B DC 13 1_555 ? ? ? ? ? ? WATSON-CRICK ? ? ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? hydrog ? ? # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software A 1TW 10 ? 13 'BINDING SITE FOR RESIDUE 1TW A 10' AC2 Software B 1TW 22 ? 12 'BINDING SITE FOR RESIDUE 1TW B 22' AC3 Software A MG 101 ? 6 'BINDING SITE FOR RESIDUE MG A 101' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 13 DC A 9 ? DC A 9 . ? 1_555 ? 2 AC1 13 DC A 11 ? DC A 11 . ? 1_555 ? 3 AC1 13 HOH D . ? HOH A 211 . ? 1_555 ? 4 AC1 13 HOH D . ? HOH A 217 . ? 1_555 ? 5 AC1 13 HOH D . ? HOH A 223 . ? 1_555 ? 6 AC1 13 HOH D . ? HOH A 224 . ? 1_555 ? 7 AC1 13 HOH D . ? HOH A 239 . ? 1_555 ? 8 AC1 13 HOH D . ? HOH A 242 . ? 1_555 ? 9 AC1 13 HOH D . ? HOH A 243 . ? 1_555 ? 10 AC1 13 DG B 2 ? DG B 14 . ? 1_555 ? 11 AC1 13 DC B 3 ? DC B 15 . ? 1_555 ? 12 AC1 13 DG B 4 ? DG B 16 . ? 1_555 ? 13 AC1 13 DG B 12 ? DG B 24 . ? 2_664 ? 14 AC2 12 DG A 2 ? DG A 2 . ? 1_555 ? 15 AC2 12 DC A 3 ? DC A 3 . ? 1_555 ? 16 AC2 12 DG A 4 ? DG A 4 . ? 1_555 ? 17 AC2 12 DG A 12 ? DG A 12 . ? 2_665 ? 18 AC2 12 DC B 9 ? DC B 21 . ? 1_555 ? 19 AC2 12 DC B 11 ? DC B 23 . ? 1_555 ? 20 AC2 12 HOH E . ? HOH B 102 . ? 1_555 ? 21 AC2 12 HOH E . ? HOH B 103 . ? 1_555 ? 22 AC2 12 HOH E . ? HOH B 104 . ? 1_555 ? 23 AC2 12 HOH E . ? HOH B 120 . ? 1_555 ? 24 AC2 12 HOH E . ? HOH B 129 . ? 1_555 ? 25 AC2 12 HOH E . ? HOH B 133 . ? 1_555 ? 26 AC3 6 HOH D . ? HOH A 201 . ? 3_655 ? 27 AC3 6 HOH D . ? HOH A 206 . ? 3_655 ? 28 AC3 6 HOH D . ? HOH A 228 . ? 1_555 ? 29 AC3 6 HOH D . ? HOH A 229 . ? 1_555 ? 30 AC3 6 HOH E . ? HOH B 102 . ? 1_555 ? 31 AC3 6 HOH E . ? HOH B 116 . ? 1_555 ? # _database_PDB_matrix.entry_id 4KW0 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4KW0 _atom_sites.fract_transf_matrix[1][1] 0.038790 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.025067 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.015223 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C MG N O P SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 DC 1 1 1 DC DC A . n A 1 2 DG 2 2 2 DG DG A . n A 1 3 DC 3 3 3 DC DC A . n A 1 4 DG 4 4 4 DG DG A . n A 1 5 DA 5 5 5 DA DA A . n A 1 6 DA 6 6 6 DA DA A . n A 1 7 DT 7 7 7 DT DT A . n A 1 8 DT 8 8 8 DT DT A . n A 1 9 DC 9 9 9 DC DC A . n A 1 10 1TW 10 10 10 1TW 2SG A . n A 1 11 DC 11 11 11 DC DC A . n A 1 12 DG 12 12 12 DG DG A . n B 1 1 DC 1 13 13 DC DC B . n B 1 2 DG 2 14 14 DG DG B . n B 1 3 DC 3 15 15 DC DC B . n B 1 4 DG 4 16 16 DG DG B . n B 1 5 DA 5 17 17 DA DA B . n B 1 6 DA 6 18 18 DA DA B . n B 1 7 DT 7 19 19 DT DT B . n B 1 8 DT 8 20 20 DT DT B . n B 1 9 DC 9 21 21 DC DC B . n B 1 10 1TW 10 22 22 1TW 2SG B . n B 1 11 DC 11 23 23 DC DC B . n B 1 12 DG 12 24 24 DG DG B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 2 MG 1 101 1 MG MG A . D 3 HOH 1 201 5 HOH HOH A . D 3 HOH 2 202 7 HOH HOH A . D 3 HOH 3 203 8 HOH HOH A . D 3 HOH 4 204 9 HOH HOH A . D 3 HOH 5 205 11 HOH HOH A . D 3 HOH 6 206 13 HOH HOH A . D 3 HOH 7 207 14 HOH HOH A . D 3 HOH 8 208 15 HOH HOH A . D 3 HOH 9 209 16 HOH HOH A . D 3 HOH 10 210 18 HOH HOH A . D 3 HOH 11 211 20 HOH HOH A . D 3 HOH 12 212 21 HOH HOH A . D 3 HOH 13 213 24 HOH HOH A . D 3 HOH 14 214 25 HOH HOH A . D 3 HOH 15 215 26 HOH HOH A . D 3 HOH 16 216 29 HOH HOH A . D 3 HOH 17 217 30 HOH HOH A . D 3 HOH 18 218 32 HOH HOH A . D 3 HOH 19 219 33 HOH HOH A . D 3 HOH 20 220 35 HOH HOH A . D 3 HOH 21 221 36 HOH HOH A . D 3 HOH 22 222 37 HOH HOH A . D 3 HOH 23 223 38 HOH HOH A . D 3 HOH 24 224 39 HOH HOH A . D 3 HOH 25 225 41 HOH HOH A . D 3 HOH 26 226 42 HOH HOH A . D 3 HOH 27 227 45 HOH HOH A . D 3 HOH 28 228 47 HOH HOH A . D 3 HOH 29 229 48 HOH HOH A . D 3 HOH 30 230 49 HOH HOH A . D 3 HOH 31 231 53 HOH HOH A . D 3 HOH 32 232 54 HOH HOH A . D 3 HOH 33 233 58 HOH HOH A . D 3 HOH 34 234 65 HOH HOH A . D 3 HOH 35 235 70 HOH HOH A . D 3 HOH 36 236 78 HOH HOH A . D 3 HOH 37 237 79 HOH HOH A . D 3 HOH 38 238 81 HOH HOH A . D 3 HOH 39 239 88 HOH HOH A . D 3 HOH 40 240 90 HOH HOH A . D 3 HOH 41 241 91 HOH HOH A . D 3 HOH 42 242 93 HOH HOH A . D 3 HOH 43 243 99 HOH HOH A . D 3 HOH 44 244 100 HOH HOH A . D 3 HOH 45 245 102 HOH HOH A . D 3 HOH 46 246 106 HOH HOH A . D 3 HOH 47 247 109 HOH HOH A . D 3 HOH 48 248 110 HOH HOH A . D 3 HOH 49 249 111 HOH HOH A . E 3 HOH 1 101 3 HOH HOH B . E 3 HOH 2 102 4 HOH HOH B . E 3 HOH 3 103 6 HOH HOH B . E 3 HOH 4 104 10 HOH HOH B . E 3 HOH 5 105 12 HOH HOH B . E 3 HOH 6 106 17 HOH HOH B . E 3 HOH 7 107 19 HOH HOH B . E 3 HOH 8 108 22 HOH HOH B . E 3 HOH 9 109 23 HOH HOH B . E 3 HOH 10 110 27 HOH HOH B . E 3 HOH 11 111 28 HOH HOH B . E 3 HOH 12 112 31 HOH HOH B . E 3 HOH 13 113 34 HOH HOH B . E 3 HOH 14 114 40 HOH HOH B . E 3 HOH 15 115 43 HOH HOH B . E 3 HOH 16 116 50 HOH HOH B . E 3 HOH 17 117 51 HOH HOH B . E 3 HOH 18 118 55 HOH HOH B . E 3 HOH 19 119 56 HOH HOH B . E 3 HOH 20 120 57 HOH HOH B . E 3 HOH 21 121 60 HOH HOH B . E 3 HOH 22 122 61 HOH HOH B . E 3 HOH 23 123 62 HOH HOH B . E 3 HOH 24 124 63 HOH HOH B . E 3 HOH 25 125 66 HOH HOH B . E 3 HOH 26 126 69 HOH HOH B . E 3 HOH 27 127 77 HOH HOH B . E 3 HOH 28 128 82 HOH HOH B . E 3 HOH 29 129 83 HOH HOH B . E 3 HOH 30 130 84 HOH HOH B . E 3 HOH 31 131 85 HOH HOH B . E 3 HOH 32 132 86 HOH HOH B . E 3 HOH 33 133 87 HOH HOH B . E 3 HOH 34 134 92 HOH HOH B . E 3 HOH 35 135 94 HOH HOH B . E 3 HOH 36 136 95 HOH HOH B . E 3 HOH 37 137 96 HOH HOH B . E 3 HOH 38 138 103 HOH HOH B . E 3 HOH 39 139 104 HOH HOH B . E 3 HOH 40 140 105 HOH HOH B . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 2450 ? 1 MORE 2 ? 1 'SSA (A^2)' 4340 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 O ? D HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? D HOH . ? A HOH 229 ? 1_555 92.8 ? 2 O ? D HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? B HOH 102 ? 1_555 94.1 ? 3 O ? D HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? B HOH 102 ? 1_555 87.3 ? 4 O ? D HOH . ? A HOH 228 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? B HOH 116 ? 1_555 91.7 ? 5 O ? D HOH . ? A HOH 229 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? B HOH 116 ? 1_555 174.1 ? 6 O ? E HOH . ? B HOH 102 ? 1_555 MG ? C MG . ? A MG 101 ? 1_555 O ? E HOH . ? B HOH 116 ? 1_555 88.6 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-17 2 'Structure model' 1 1 2023-09-20 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Data collection' 2 2 'Structure model' 'Database references' 3 2 'Structure model' 'Derived calculations' 4 2 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 2 'Structure model' chem_comp_atom 2 2 'Structure model' chem_comp_bond 3 2 'Structure model' database_2 4 2 'Structure model' pdbx_initial_refinement_model 5 2 'Structure model' pdbx_struct_conn_angle 6 2 'Structure model' struct_conn 7 2 'Structure model' struct_conn_type 8 2 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_database_2.pdbx_DOI' 2 2 'Structure model' '_database_2.pdbx_database_accession' 3 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_asym_id' 4 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_auth_seq_id' 5 2 'Structure model' '_pdbx_struct_conn_angle.ptnr1_label_asym_id' 6 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_asym_id' 7 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_auth_seq_id' 8 2 'Structure model' '_pdbx_struct_conn_angle.ptnr3_label_asym_id' 9 2 'Structure model' '_pdbx_struct_conn_angle.value' 10 2 'Structure model' '_struct_conn.conn_type_id' 11 2 'Structure model' '_struct_conn.id' 12 2 'Structure model' '_struct_conn.pdbx_dist_value' 13 2 'Structure model' '_struct_conn.pdbx_leaving_atom_flag' 14 2 'Structure model' '_struct_conn.ptnr1_auth_asym_id' 15 2 'Structure model' '_struct_conn.ptnr1_auth_comp_id' 16 2 'Structure model' '_struct_conn.ptnr1_auth_seq_id' 17 2 'Structure model' '_struct_conn.ptnr1_label_asym_id' 18 2 'Structure model' '_struct_conn.ptnr1_label_atom_id' 19 2 'Structure model' '_struct_conn.ptnr1_label_comp_id' 20 2 'Structure model' '_struct_conn.ptnr1_label_seq_id' 21 2 'Structure model' '_struct_conn.ptnr2_auth_asym_id' 22 2 'Structure model' '_struct_conn.ptnr2_auth_comp_id' 23 2 'Structure model' '_struct_conn.ptnr2_auth_seq_id' 24 2 'Structure model' '_struct_conn.ptnr2_label_asym_id' 25 2 'Structure model' '_struct_conn.ptnr2_label_atom_id' 26 2 'Structure model' '_struct_conn.ptnr2_label_comp_id' 27 2 'Structure model' '_struct_conn.ptnr2_label_seq_id' 28 2 'Structure model' '_struct_conn_type.id' 29 2 'Structure model' '_struct_site.pdbx_auth_asym_id' 30 2 'Structure model' '_struct_site.pdbx_auth_comp_id' 31 2 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHASER phasing . ? 2 REFMAC refinement 5.5.0109 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 "O4'" A DA 5 ? ? "C1'" A DA 5 ? ? N9 A DA 5 ? ? 103.70 108.00 -4.30 0.70 N 2 1 "O4'" A DC 9 ? ? "C1'" A DC 9 ? ? N1 A DC 9 ? ? 101.77 108.00 -6.23 0.70 N 3 1 "O4'" A DC 11 ? ? "C1'" A DC 11 ? ? N1 A DC 11 ? ? 102.54 108.00 -5.46 0.70 N 4 1 "O4'" A DG 12 ? ? "C1'" A DG 12 ? ? N9 A DG 12 ? ? 103.45 108.00 -4.55 0.70 N 5 1 "O4'" B DC 13 ? ? "C1'" B DC 13 ? ? N1 B DC 13 ? ? 103.58 108.00 -4.42 0.70 N 6 1 "O4'" B DG 16 ? ? "C1'" B DG 16 ? ? N9 B DG 16 ? ? 111.32 108.30 3.02 0.30 N 7 1 "C3'" B DG 16 ? ? "O3'" B DG 16 ? ? P B DA 17 ? ? 126.93 119.70 7.23 1.20 Y 8 1 "O4'" B DA 17 ? ? "C1'" B DA 17 ? ? N9 B DA 17 ? ? 103.56 108.00 -4.44 0.70 N 9 1 "O4'" B DC 21 ? ? "C1'" B DC 21 ? ? N1 B DC 21 ? ? 102.00 108.00 -6.00 0.70 N # loop_ _chem_comp_atom.comp_id _chem_comp_atom.atom_id _chem_comp_atom.type_symbol _chem_comp_atom.pdbx_aromatic_flag _chem_comp_atom.pdbx_stereo_config _chem_comp_atom.pdbx_ordinal 1TW O6 O N N 1 1TW C6 C N N 2 1TW C5 C Y N 3 1TW N7 N Y N 4 1TW C8 C Y N 5 1TW N1 N N N 6 1TW C2 C N N 7 1TW N2 N N N 8 1TW N3 N N N 9 1TW C4 C Y N 10 1TW N9 N Y N 11 1TW "C1'" C N R 12 1TW "O4'" O N N 13 1TW "C2'" C N S 14 1TW SE2 SE N N 15 1TW "CA'" C N N 16 1TW "C3'" C N R 17 1TW "O3'" O N N 18 1TW "C4'" C N R 19 1TW "C5'" C N N 20 1TW "O5'" O N N 21 1TW P P N N 22 1TW OP1 O N N 23 1TW OP2 O N N 24 1TW H1 H N N 25 1TW H2 H N N 26 1TW H3 H N N 27 1TW H4 H N N 28 1TW H5 H N N 29 1TW H6 H N N 30 1TW H7 H N N 31 1TW H8 H N N 32 1TW H9 H N N 33 1TW H10 H N N 34 1TW H11 H N N 35 1TW H12 H N N 36 1TW H13 H N N 37 1TW H14 H N N 38 1TW H16 H N N 39 1TW OP3 O N N 40 1TW H15 H N N 41 DA OP3 O N N 42 DA P P N N 43 DA OP1 O N N 44 DA OP2 O N N 45 DA "O5'" O N N 46 DA "C5'" C N N 47 DA "C4'" C N R 48 DA "O4'" O N N 49 DA "C3'" C N S 50 DA "O3'" O N N 51 DA "C2'" C N N 52 DA "C1'" C N R 53 DA N9 N Y N 54 DA C8 C Y N 55 DA N7 N Y N 56 DA C5 C Y N 57 DA C6 C Y N 58 DA N6 N N N 59 DA N1 N Y N 60 DA C2 C Y N 61 DA N3 N Y N 62 DA C4 C Y N 63 DA HOP3 H N N 64 DA HOP2 H N N 65 DA "H5'" H N N 66 DA "H5''" H N N 67 DA "H4'" H N N 68 DA "H3'" H N N 69 DA "HO3'" H N N 70 DA "H2'" H N N 71 DA "H2''" H N N 72 DA "H1'" H N N 73 DA H8 H N N 74 DA H61 H N N 75 DA H62 H N N 76 DA H2 H N N 77 DC OP3 O N N 78 DC P P N N 79 DC OP1 O N N 80 DC OP2 O N N 81 DC "O5'" O N N 82 DC "C5'" C N N 83 DC "C4'" C N R 84 DC "O4'" O N N 85 DC "C3'" C N S 86 DC "O3'" O N N 87 DC "C2'" C N N 88 DC "C1'" C N R 89 DC N1 N N N 90 DC C2 C N N 91 DC O2 O N N 92 DC N3 N N N 93 DC C4 C N N 94 DC N4 N N N 95 DC C5 C N N 96 DC C6 C N N 97 DC HOP3 H N N 98 DC HOP2 H N N 99 DC "H5'" H N N 100 DC "H5''" H N N 101 DC "H4'" H N N 102 DC "H3'" H N N 103 DC "HO3'" H N N 104 DC "H2'" H N N 105 DC "H2''" H N N 106 DC "H1'" H N N 107 DC H41 H N N 108 DC H42 H N N 109 DC H5 H N N 110 DC H6 H N N 111 DG OP3 O N N 112 DG P P N N 113 DG OP1 O N N 114 DG OP2 O N N 115 DG "O5'" O N N 116 DG "C5'" C N N 117 DG "C4'" C N R 118 DG "O4'" O N N 119 DG "C3'" C N S 120 DG "O3'" O N N 121 DG "C2'" C N N 122 DG "C1'" C N R 123 DG N9 N Y N 124 DG C8 C Y N 125 DG N7 N Y N 126 DG C5 C Y N 127 DG C6 C N N 128 DG O6 O N N 129 DG N1 N N N 130 DG C2 C N N 131 DG N2 N N N 132 DG N3 N N N 133 DG C4 C Y N 134 DG HOP3 H N N 135 DG HOP2 H N N 136 DG "H5'" H N N 137 DG "H5''" H N N 138 DG "H4'" H N N 139 DG "H3'" H N N 140 DG "HO3'" H N N 141 DG "H2'" H N N 142 DG "H2''" H N N 143 DG "H1'" H N N 144 DG H8 H N N 145 DG H1 H N N 146 DG H21 H N N 147 DG H22 H N N 148 DT OP3 O N N 149 DT P P N N 150 DT OP1 O N N 151 DT OP2 O N N 152 DT "O5'" O N N 153 DT "C5'" C N N 154 DT "C4'" C N R 155 DT "O4'" O N N 156 DT "C3'" C N S 157 DT "O3'" O N N 158 DT "C2'" C N N 159 DT "C1'" C N R 160 DT N1 N N N 161 DT C2 C N N 162 DT O2 O N N 163 DT N3 N N N 164 DT C4 C N N 165 DT O4 O N N 166 DT C5 C N N 167 DT C7 C N N 168 DT C6 C N N 169 DT HOP3 H N N 170 DT HOP2 H N N 171 DT "H5'" H N N 172 DT "H5''" H N N 173 DT "H4'" H N N 174 DT "H3'" H N N 175 DT "HO3'" H N N 176 DT "H2'" H N N 177 DT "H2''" H N N 178 DT "H1'" H N N 179 DT H3 H N N 180 DT H71 H N N 181 DT H72 H N N 182 DT H73 H N N 183 DT H6 H N N 184 HOH O O N N 185 HOH H1 H N N 186 HOH H2 H N N 187 MG MG MG N N 188 # loop_ _chem_comp_bond.comp_id _chem_comp_bond.atom_id_1 _chem_comp_bond.atom_id_2 _chem_comp_bond.value_order _chem_comp_bond.pdbx_aromatic_flag _chem_comp_bond.pdbx_stereo_config _chem_comp_bond.pdbx_ordinal 1TW "O3'" "C3'" sing N N 1 1TW "CA'" SE2 sing N N 2 1TW "C2'" "C3'" sing N N 3 1TW "C2'" SE2 sing N N 4 1TW "C2'" "C1'" sing N N 5 1TW "C3'" "C4'" sing N N 6 1TW "C1'" N9 sing N N 7 1TW "C1'" "O4'" sing N N 8 1TW N2 C2 sing N N 9 1TW N3 C2 doub N N 10 1TW N3 C4 sing N N 11 1TW N9 C4 sing Y N 12 1TW N9 C8 sing Y N 13 1TW C2 N1 sing N N 14 1TW C4 C5 doub Y N 15 1TW "C4'" "O4'" sing N N 16 1TW "C4'" "C5'" sing N N 17 1TW C8 N7 doub Y N 18 1TW N1 C6 sing N N 19 1TW C5 N7 sing Y N 20 1TW C5 C6 sing N N 21 1TW C6 O6 doub N N 22 1TW "O5'" "C5'" sing N N 23 1TW "O5'" P sing N N 24 1TW OP1 P doub N N 25 1TW P OP2 sing N N 26 1TW C8 H1 sing N N 27 1TW N1 H2 sing N N 28 1TW N2 H3 sing N N 29 1TW N2 H4 sing N N 30 1TW "C1'" H5 sing N N 31 1TW "C2'" H6 sing N N 32 1TW "CA'" H7 sing N N 33 1TW "CA'" H8 sing N N 34 1TW "CA'" H9 sing N N 35 1TW "C3'" H10 sing N N 36 1TW "O3'" H11 sing N N 37 1TW "C4'" H12 sing N N 38 1TW "C5'" H13 sing N N 39 1TW "C5'" H14 sing N N 40 1TW OP2 H16 sing N N 41 1TW P OP3 sing N N 42 1TW OP3 H15 sing N N 43 DA OP3 P sing N N 44 DA OP3 HOP3 sing N N 45 DA P OP1 doub N N 46 DA P OP2 sing N N 47 DA P "O5'" sing N N 48 DA OP2 HOP2 sing N N 49 DA "O5'" "C5'" sing N N 50 DA "C5'" "C4'" sing N N 51 DA "C5'" "H5'" sing N N 52 DA "C5'" "H5''" sing N N 53 DA "C4'" "O4'" sing N N 54 DA "C4'" "C3'" sing N N 55 DA "C4'" "H4'" sing N N 56 DA "O4'" "C1'" sing N N 57 DA "C3'" "O3'" sing N N 58 DA "C3'" "C2'" sing N N 59 DA "C3'" "H3'" sing N N 60 DA "O3'" "HO3'" sing N N 61 DA "C2'" "C1'" sing N N 62 DA "C2'" "H2'" sing N N 63 DA "C2'" "H2''" sing N N 64 DA "C1'" N9 sing N N 65 DA "C1'" "H1'" sing N N 66 DA N9 C8 sing Y N 67 DA N9 C4 sing Y N 68 DA C8 N7 doub Y N 69 DA C8 H8 sing N N 70 DA N7 C5 sing Y N 71 DA C5 C6 sing Y N 72 DA C5 C4 doub Y N 73 DA C6 N6 sing N N 74 DA C6 N1 doub Y N 75 DA N6 H61 sing N N 76 DA N6 H62 sing N N 77 DA N1 C2 sing Y N 78 DA C2 N3 doub Y N 79 DA C2 H2 sing N N 80 DA N3 C4 sing Y N 81 DC OP3 P sing N N 82 DC OP3 HOP3 sing N N 83 DC P OP1 doub N N 84 DC P OP2 sing N N 85 DC P "O5'" sing N N 86 DC OP2 HOP2 sing N N 87 DC "O5'" "C5'" sing N N 88 DC "C5'" "C4'" sing N N 89 DC "C5'" "H5'" sing N N 90 DC "C5'" "H5''" sing N N 91 DC "C4'" "O4'" sing N N 92 DC "C4'" "C3'" sing N N 93 DC "C4'" "H4'" sing N N 94 DC "O4'" "C1'" sing N N 95 DC "C3'" "O3'" sing N N 96 DC "C3'" "C2'" sing N N 97 DC "C3'" "H3'" sing N N 98 DC "O3'" "HO3'" sing N N 99 DC "C2'" "C1'" sing N N 100 DC "C2'" "H2'" sing N N 101 DC "C2'" "H2''" sing N N 102 DC "C1'" N1 sing N N 103 DC "C1'" "H1'" sing N N 104 DC N1 C2 sing N N 105 DC N1 C6 sing N N 106 DC C2 O2 doub N N 107 DC C2 N3 sing N N 108 DC N3 C4 doub N N 109 DC C4 N4 sing N N 110 DC C4 C5 sing N N 111 DC N4 H41 sing N N 112 DC N4 H42 sing N N 113 DC C5 C6 doub N N 114 DC C5 H5 sing N N 115 DC C6 H6 sing N N 116 DG OP3 P sing N N 117 DG OP3 HOP3 sing N N 118 DG P OP1 doub N N 119 DG P OP2 sing N N 120 DG P "O5'" sing N N 121 DG OP2 HOP2 sing N N 122 DG "O5'" "C5'" sing N N 123 DG "C5'" "C4'" sing N N 124 DG "C5'" "H5'" sing N N 125 DG "C5'" "H5''" sing N N 126 DG "C4'" "O4'" sing N N 127 DG "C4'" "C3'" sing N N 128 DG "C4'" "H4'" sing N N 129 DG "O4'" "C1'" sing N N 130 DG "C3'" "O3'" sing N N 131 DG "C3'" "C2'" sing N N 132 DG "C3'" "H3'" sing N N 133 DG "O3'" "HO3'" sing N N 134 DG "C2'" "C1'" sing N N 135 DG "C2'" "H2'" sing N N 136 DG "C2'" "H2''" sing N N 137 DG "C1'" N9 sing N N 138 DG "C1'" "H1'" sing N N 139 DG N9 C8 sing Y N 140 DG N9 C4 sing Y N 141 DG C8 N7 doub Y N 142 DG C8 H8 sing N N 143 DG N7 C5 sing Y N 144 DG C5 C6 sing N N 145 DG C5 C4 doub Y N 146 DG C6 O6 doub N N 147 DG C6 N1 sing N N 148 DG N1 C2 sing N N 149 DG N1 H1 sing N N 150 DG C2 N2 sing N N 151 DG C2 N3 doub N N 152 DG N2 H21 sing N N 153 DG N2 H22 sing N N 154 DG N3 C4 sing N N 155 DT OP3 P sing N N 156 DT OP3 HOP3 sing N N 157 DT P OP1 doub N N 158 DT P OP2 sing N N 159 DT P "O5'" sing N N 160 DT OP2 HOP2 sing N N 161 DT "O5'" "C5'" sing N N 162 DT "C5'" "C4'" sing N N 163 DT "C5'" "H5'" sing N N 164 DT "C5'" "H5''" sing N N 165 DT "C4'" "O4'" sing N N 166 DT "C4'" "C3'" sing N N 167 DT "C4'" "H4'" sing N N 168 DT "O4'" "C1'" sing N N 169 DT "C3'" "O3'" sing N N 170 DT "C3'" "C2'" sing N N 171 DT "C3'" "H3'" sing N N 172 DT "O3'" "HO3'" sing N N 173 DT "C2'" "C1'" sing N N 174 DT "C2'" "H2'" sing N N 175 DT "C2'" "H2''" sing N N 176 DT "C1'" N1 sing N N 177 DT "C1'" "H1'" sing N N 178 DT N1 C2 sing N N 179 DT N1 C6 sing N N 180 DT C2 O2 doub N N 181 DT C2 N3 sing N N 182 DT N3 C4 sing N N 183 DT N3 H3 sing N N 184 DT C4 O4 doub N N 185 DT C4 C5 sing N N 186 DT C5 C7 sing N N 187 DT C5 C6 doub N N 188 DT C7 H71 sing N N 189 DT C7 H72 sing N N 190 DT C7 H73 sing N N 191 DT C6 H6 sing N N 192 HOH O H1 sing N N 193 HOH O H2 sing N N 194 # _ndb_struct_conf_na.entry_id 4KW0 _ndb_struct_conf_na.feature 'b-form double helix' # loop_ _ndb_struct_na_base_pair.model_number _ndb_struct_na_base_pair.i_label_asym_id _ndb_struct_na_base_pair.i_label_comp_id _ndb_struct_na_base_pair.i_label_seq_id _ndb_struct_na_base_pair.i_symmetry _ndb_struct_na_base_pair.j_label_asym_id _ndb_struct_na_base_pair.j_label_comp_id _ndb_struct_na_base_pair.j_label_seq_id _ndb_struct_na_base_pair.j_symmetry _ndb_struct_na_base_pair.shear _ndb_struct_na_base_pair.stretch _ndb_struct_na_base_pair.stagger _ndb_struct_na_base_pair.buckle _ndb_struct_na_base_pair.propeller _ndb_struct_na_base_pair.opening _ndb_struct_na_base_pair.pair_number _ndb_struct_na_base_pair.pair_name _ndb_struct_na_base_pair.i_auth_asym_id _ndb_struct_na_base_pair.i_auth_seq_id _ndb_struct_na_base_pair.i_PDB_ins_code _ndb_struct_na_base_pair.j_auth_asym_id _ndb_struct_na_base_pair.j_auth_seq_id _ndb_struct_na_base_pair.j_PDB_ins_code _ndb_struct_na_base_pair.hbond_type_28 _ndb_struct_na_base_pair.hbond_type_12 1 A DC 1 1_555 B DG 12 1_555 0.296 -0.162 0.065 7.052 -14.101 -1.518 1 A_DC1:DG24_B A 1 ? B 24 ? 19 1 1 A DG 2 1_555 B DC 11 1_555 -0.282 -0.212 0.212 3.135 -8.148 -2.529 2 A_DG2:DC23_B A 2 ? B 23 ? 19 1 1 A DC 3 1_555 B 1TW 10 1_555 0.118 -0.185 0.173 2.697 -7.736 -0.406 3 A_DC3:1TW22_B A 3 ? B 22 ? 19 1 1 A DG 4 1_555 B DC 9 1_555 -0.287 -0.111 0.077 13.526 -9.571 0.747 4 A_DG4:DC21_B A 4 ? B 21 ? 19 1 1 A DA 5 1_555 B DT 8 1_555 0.087 -0.110 0.013 4.005 -14.067 3.426 5 A_DA5:DT20_B A 5 ? B 20 ? 20 1 1 A DA 6 1_555 B DT 7 1_555 0.073 -0.141 0.096 1.063 -16.314 5.059 6 A_DA6:DT19_B A 6 ? B 19 ? 20 1 1 A DT 7 1_555 B DA 6 1_555 -0.046 -0.130 0.119 -0.450 -14.839 3.018 7 A_DT7:DA18_B A 7 ? B 18 ? 20 1 1 A DT 8 1_555 B DA 5 1_555 -0.054 -0.182 -0.080 -2.179 -12.186 2.803 8 A_DT8:DA17_B A 8 ? B 17 ? 20 1 1 A DC 9 1_555 B DG 4 1_555 0.195 -0.098 0.149 -13.925 -6.662 -1.072 9 A_DC9:DG16_B A 9 ? B 16 ? 19 1 1 A 1TW 10 1_555 B DC 3 1_555 -0.150 -0.131 0.316 4.176 -8.444 1.576 10 A_1TW10:DC15_B A 10 ? B 15 ? 19 1 1 A DC 11 1_555 B DG 2 1_555 0.100 -0.158 0.193 0.587 -18.813 -2.116 11 A_DC11:DG14_B A 11 ? B 14 ? 19 1 1 A DG 12 1_555 B DC 1 1_555 -0.211 -0.164 0.289 3.699 -7.725 -1.534 12 A_DG12:DC13_B A 12 ? B 13 ? 19 1 # loop_ _ndb_struct_na_base_pair_step.model_number _ndb_struct_na_base_pair_step.i_label_asym_id_1 _ndb_struct_na_base_pair_step.i_label_comp_id_1 _ndb_struct_na_base_pair_step.i_label_seq_id_1 _ndb_struct_na_base_pair_step.i_symmetry_1 _ndb_struct_na_base_pair_step.j_label_asym_id_1 _ndb_struct_na_base_pair_step.j_label_comp_id_1 _ndb_struct_na_base_pair_step.j_label_seq_id_1 _ndb_struct_na_base_pair_step.j_symmetry_1 _ndb_struct_na_base_pair_step.i_label_asym_id_2 _ndb_struct_na_base_pair_step.i_label_comp_id_2 _ndb_struct_na_base_pair_step.i_label_seq_id_2 _ndb_struct_na_base_pair_step.i_symmetry_2 _ndb_struct_na_base_pair_step.j_label_asym_id_2 _ndb_struct_na_base_pair_step.j_label_comp_id_2 _ndb_struct_na_base_pair_step.j_label_seq_id_2 _ndb_struct_na_base_pair_step.j_symmetry_2 _ndb_struct_na_base_pair_step.shift _ndb_struct_na_base_pair_step.slide _ndb_struct_na_base_pair_step.rise _ndb_struct_na_base_pair_step.tilt _ndb_struct_na_base_pair_step.roll _ndb_struct_na_base_pair_step.twist _ndb_struct_na_base_pair_step.x_displacement _ndb_struct_na_base_pair_step.y_displacement _ndb_struct_na_base_pair_step.helical_rise _ndb_struct_na_base_pair_step.inclination _ndb_struct_na_base_pair_step.tip _ndb_struct_na_base_pair_step.helical_twist _ndb_struct_na_base_pair_step.step_number _ndb_struct_na_base_pair_step.step_name _ndb_struct_na_base_pair_step.i_auth_asym_id_1 _ndb_struct_na_base_pair_step.i_auth_seq_id_1 _ndb_struct_na_base_pair_step.i_PDB_ins_code_1 _ndb_struct_na_base_pair_step.j_auth_asym_id_1 _ndb_struct_na_base_pair_step.j_auth_seq_id_1 _ndb_struct_na_base_pair_step.j_PDB_ins_code_1 _ndb_struct_na_base_pair_step.i_auth_asym_id_2 _ndb_struct_na_base_pair_step.i_auth_seq_id_2 _ndb_struct_na_base_pair_step.i_PDB_ins_code_2 _ndb_struct_na_base_pair_step.j_auth_asym_id_2 _ndb_struct_na_base_pair_step.j_auth_seq_id_2 _ndb_struct_na_base_pair_step.j_PDB_ins_code_2 1 A DC 1 1_555 B DG 12 1_555 A DG 2 1_555 B DC 11 1_555 0.342 0.121 3.369 0.660 4.702 34.133 -0.551 -0.471 3.361 7.963 -1.118 34.451 1 AA_DC1DG2:DC23DG24_BB A 1 ? B 24 ? A 2 ? B 23 ? 1 A DG 2 1_555 B DC 11 1_555 A DC 3 1_555 B 1TW 10 1_555 0.745 0.250 3.340 0.730 -3.344 41.060 0.723 -0.979 3.323 -4.758 -1.039 41.197 2 AA_DG2DC3:1TW22DC23_BB A 2 ? B 23 ? A 3 ? B 22 ? 1 A DC 3 1_555 B 1TW 10 1_555 A DG 4 1_555 B DC 9 1_555 -0.303 0.241 3.099 1.829 9.900 25.137 -1.898 1.094 2.950 21.670 -4.004 27.048 3 AA_DC3DG4:DC211TW22_BB A 3 ? B 22 ? A 4 ? B 21 ? 1 A DG 4 1_555 B DC 9 1_555 A DA 5 1_555 B DT 8 1_555 -0.063 -0.242 3.415 -0.903 1.469 40.687 -0.517 -0.013 3.406 2.111 1.298 40.722 4 AA_DG4DA5:DT20DC21_BB A 4 ? B 21 ? A 5 ? B 20 ? 1 A DA 5 1_555 B DT 8 1_555 A DA 6 1_555 B DT 7 1_555 -0.019 -0.344 3.266 -0.890 -1.041 35.965 -0.409 -0.097 3.274 -1.686 1.441 35.990 5 AA_DA5DA6:DT19DT20_BB A 5 ? B 20 ? A 6 ? B 19 ? 1 A DA 6 1_555 B DT 7 1_555 A DT 7 1_555 B DA 6 1_555 0.088 -0.587 3.248 -0.310 -2.395 31.640 -0.635 -0.218 3.281 -4.384 0.567 31.729 6 AA_DA6DT7:DA18DT19_BB A 6 ? B 19 ? A 7 ? B 18 ? 1 A DT 7 1_555 B DA 6 1_555 A DT 8 1_555 B DA 5 1_555 -0.061 -0.505 3.208 1.955 -1.534 34.424 -0.618 0.400 3.218 -2.588 -3.299 34.511 7 AA_DT7DT8:DA17DA18_BB A 7 ? B 18 ? A 8 ? B 17 ? 1 A DT 8 1_555 B DA 5 1_555 A DC 9 1_555 B DG 4 1_555 -0.155 -0.340 3.518 -0.602 -2.259 42.071 -0.222 0.148 3.532 -3.144 0.838 42.133 8 AA_DT8DC9:DG16DA17_BB A 8 ? B 17 ? A 9 ? B 16 ? 1 A DC 9 1_555 B DG 4 1_555 A 1TW 10 1_555 B DC 3 1_555 0.575 0.538 2.963 -2.625 4.660 25.039 0.008 -1.978 2.938 10.594 5.968 25.595 9 AA_DC91TW10:DC15DG16_BB A 9 ? B 16 ? A 10 ? B 15 ? 1 A 1TW 10 1_555 B DC 3 1_555 A DC 11 1_555 B DG 2 1_555 -1.289 0.616 3.418 -1.561 -11.574 44.294 1.833 1.519 3.210 -15.043 2.029 45.732 10 AA_1TW10DC11:DG14DC15_BB A 10 ? B 15 ? A 11 ? B 14 ? 1 A DC 11 1_555 B DG 2 1_555 A DG 12 1_555 B DC 1 1_555 -0.236 0.329 3.188 -0.884 6.448 32.784 -0.480 0.267 3.198 11.286 1.546 33.407 11 AA_DC11DG12:DC13DG14_BB A 11 ? B 14 ? A 12 ? B 13 ? # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'MAGNESIUM ION' MG 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 1BNA _pdbx_initial_refinement_model.details ? #