HEADER FLUORESCENT PROTEIN 23-MAY-13 4KW8 TITLE CRYSTAL STRUCTURE OF GREEN FLUORESCENT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: THE PROTEIN IN THIS STRUCTURE IS A VERSION OF GFP COMPND 7 CALLED EMERALD GFP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BETA BARREL, FLUORESCENT PROTEIN, CHROMOPHORE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.BARNARD,X.YU,N.NOINAJ,J.W.TARASKA REVDAT 3 21-DEC-22 4KW8 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4KW8 1 REMARK REVDAT 1 09-APR-14 4KW8 0 JRNL AUTH T.J.BARNARD,X.YU,N.NOINAJ,J.W.TARASKA JRNL TITL CRYSTAL STRUCTURE OF GREEN FLUORESCENT PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 7770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.160 REMARK 3 R VALUE (WORKING SET) : 0.152 REMARK 3 FREE R VALUE : 0.225 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.090 REMARK 3 FREE R VALUE TEST SET COUNT : 770 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 45.7010 - 5.4649 1.00 1249 137 0.1816 0.2568 REMARK 3 2 5.4649 - 4.3387 1.00 1240 141 0.1132 0.1518 REMARK 3 3 4.3387 - 3.7906 1.00 1248 145 0.1105 0.2020 REMARK 3 4 3.7906 - 3.4441 1.00 1236 135 0.1197 0.1864 REMARK 3 5 3.4441 - 3.1974 1.00 1250 139 0.1292 0.2020 REMARK 3 6 3.1974 - 3.0089 1.00 1225 134 0.1479 0.2510 REMARK 3 7 3.0089 - 2.8582 1.00 1244 145 0.1863 0.2798 REMARK 3 8 2.8582 - 2.7338 1.00 1257 139 0.2111 0.2997 REMARK 3 9 2.7338 - 2.6286 1.00 1216 144 0.2183 0.3211 REMARK 3 10 2.6286 - 2.5379 1.00 1263 134 0.2337 0.2788 REMARK 3 11 2.5379 - 2.4590 0.98 1210 138 0.2333 0.3079 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.310 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 23.330 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 28.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 1750 REMARK 3 ANGLE : 1.514 2380 REMARK 3 CHIRALITY : 0.072 264 REMARK 3 PLANARITY : 0.006 305 REMARK 3 DIHEDRAL : 14.792 608 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 7 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 4 THROUGH 24 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.8285 9.2862 67.7359 REMARK 3 T TENSOR REMARK 3 T11: 0.1182 T22: 0.2180 REMARK 3 T33: 0.1505 T12: 0.0299 REMARK 3 T13: -0.0238 T23: 0.0573 REMARK 3 L TENSOR REMARK 3 L11: 1.5773 L22: 3.9086 REMARK 3 L33: 2.0102 L12: 1.7359 REMARK 3 L13: -0.0343 L23: 0.7124 REMARK 3 S TENSOR REMARK 3 S11: -0.1395 S12: -0.3099 S13: 0.1724 REMARK 3 S21: 0.0180 S22: 0.3506 S23: -0.2218 REMARK 3 S31: 0.0277 S32: 0.2640 S33: -0.1471 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 25 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 106.3811 3.7761 61.7420 REMARK 3 T TENSOR REMARK 3 T11: 0.0915 T22: 0.2363 REMARK 3 T33: 0.1568 T12: -0.0283 REMARK 3 T13: -0.0110 T23: -0.0117 REMARK 3 L TENSOR REMARK 3 L11: 1.4199 L22: 4.4857 REMARK 3 L33: 2.4963 L12: -0.1198 REMARK 3 L13: -0.9616 L23: 0.2413 REMARK 3 S TENSOR REMARK 3 S11: -0.0735 S12: -0.1874 S13: -0.1316 REMARK 3 S21: -0.1684 S22: 0.0264 S23: -0.0820 REMARK 3 S31: 0.1176 S32: 0.1087 S33: 0.0537 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 81 ) REMARK 3 ORIGIN FOR THE GROUP (A): 93.6829 13.9058 77.0817 REMARK 3 T TENSOR REMARK 3 T11: 0.2366 T22: 0.3189 REMARK 3 T33: 0.2719 T12: -0.0327 REMARK 3 T13: 0.0212 T23: -0.0037 REMARK 3 L TENSOR REMARK 3 L11: 8.6117 L22: 7.2123 REMARK 3 L33: 3.6157 L12: 0.6074 REMARK 3 L13: -2.0642 L23: -1.8143 REMARK 3 S TENSOR REMARK 3 S11: 0.3258 S12: -0.5590 S13: 0.2362 REMARK 3 S21: 0.4547 S22: 0.1855 S23: 0.7399 REMARK 3 S31: -0.3148 S32: 0.1795 S33: -0.5006 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 82 THROUGH 128 ) REMARK 3 ORIGIN FOR THE GROUP (A): 108.2214 3.2570 73.6411 REMARK 3 T TENSOR REMARK 3 T11: 0.1797 T22: 0.1959 REMARK 3 T33: 0.1249 T12: 0.0137 REMARK 3 T13: -0.0284 T23: 0.0208 REMARK 3 L TENSOR REMARK 3 L11: 2.9257 L22: 2.9335 REMARK 3 L33: 1.8155 L12: -0.1423 REMARK 3 L13: -0.2011 L23: 0.3853 REMARK 3 S TENSOR REMARK 3 S11: 0.0854 S12: -0.4549 S13: 0.0324 REMARK 3 S21: 0.3718 S22: -0.0260 S23: -0.2373 REMARK 3 S31: 0.2149 S32: 0.1519 S33: -0.0230 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 129 THROUGH 159 ) REMARK 3 ORIGIN FOR THE GROUP (A): 100.0810 -5.9672 68.4240 REMARK 3 T TENSOR REMARK 3 T11: 0.2482 T22: 0.2014 REMARK 3 T33: 0.2601 T12: -0.0274 REMARK 3 T13: -0.0558 T23: 0.0318 REMARK 3 L TENSOR REMARK 3 L11: 1.8008 L22: 4.5414 REMARK 3 L33: 4.1886 L12: -0.3467 REMARK 3 L13: -1.7943 L23: 2.6350 REMARK 3 S TENSOR REMARK 3 S11: -0.1620 S12: 0.0006 S13: -0.2347 REMARK 3 S21: 0.1864 S22: 0.1037 S23: 0.1775 REMARK 3 S31: 0.4243 S32: -0.0001 S33: 0.0326 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 160 THROUGH 198 ) REMARK 3 ORIGIN FOR THE GROUP (A): 99.3446 -1.2148 75.4521 REMARK 3 T TENSOR REMARK 3 T11: 0.2075 T22: 0.2107 REMARK 3 T33: 0.2391 T12: 0.0483 REMARK 3 T13: -0.0268 T23: 0.0465 REMARK 3 L TENSOR REMARK 3 L11: 2.1528 L22: 1.3515 REMARK 3 L33: 2.7164 L12: 0.3909 REMARK 3 L13: 0.1947 L23: 0.2075 REMARK 3 S TENSOR REMARK 3 S11: 0.0514 S12: -0.3733 S13: -0.1494 REMARK 3 S21: 0.1832 S22: 0.0731 S23: 0.1376 REMARK 3 S31: 0.3282 S32: -0.2263 S33: -0.1270 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 199 THROUGH 228 ) REMARK 3 ORIGIN FOR THE GROUP (A): 98.4809 5.3055 60.5668 REMARK 3 T TENSOR REMARK 3 T11: 0.1989 T22: 0.1850 REMARK 3 T33: 0.2191 T12: -0.0498 REMARK 3 T13: -0.0333 T23: -0.0351 REMARK 3 L TENSOR REMARK 3 L11: 2.0749 L22: 0.8900 REMARK 3 L33: 3.3141 L12: -0.6381 REMARK 3 L13: -0.3118 L23: 0.3739 REMARK 3 S TENSOR REMARK 3 S11: -0.1925 S12: 0.2930 S13: -0.1501 REMARK 3 S21: -0.1512 S22: -0.0612 S23: 0.2051 REMARK 3 S31: 0.4327 S32: -0.7392 S33: 0.2454 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KW8 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079872. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 25-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-B REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.37645 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL CRYO-COOLED REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 8306 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.450 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.900 REMARK 200 R MERGE (I) : 0.17400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 6.4000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.45 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.54 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.88900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.2 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 37.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 1.98 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES PH 8.2, 50 MM MGCL2, 22% REMARK 280 PEG4000, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 25.81150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 33.17350 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 31.51050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 33.17350 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 25.81150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 31.51050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 SER A 2 REMARK 465 LYS A 3 REMARK 465 ILE A 229 REMARK 465 THR A 230 REMARK 465 LEU A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 GLU A 6 CG CD OE1 OE2 REMARK 470 ASP A 19 OD1 OD2 REMARK 470 LYS A 26 CD CE NZ REMARK 470 GLU A 32 OE1 OE2 REMARK 470 LYS A 52 CD CE NZ REMARK 470 LYS A 79 CD CE NZ REMARK 470 GLN A 80 CD OE1 NE2 REMARK 470 GLU A 95 OE1 OE2 REMARK 470 LYS A 101 CE NZ REMARK 470 ASP A 102 CG OD1 OD2 REMARK 470 GLU A 111 CD OE1 OE2 REMARK 470 LYS A 113 CE NZ REMARK 470 ARG A 122 CD NE CZ NH1 NH2 REMARK 470 GLU A 124 CD OE1 OE2 REMARK 470 LYS A 126 CD CE NZ REMARK 470 LYS A 131 NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 LYS A 140 CE NZ REMARK 470 LYS A 149 CE NZ REMARK 470 LYS A 156 CG CD CE NZ REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 LYS A 158 NZ REMARK 470 LYS A 162 CD CE NZ REMARK 470 LYS A 166 CD CE NZ REMARK 470 ARG A 168 NE CZ NH1 NH2 REMARK 470 GLU A 172 CG CD OE1 OE2 REMARK 470 LEU A 178 CG CD1 CD2 REMARK 470 ASP A 180 OD1 OD2 REMARK 470 GLN A 184 CD OE1 NE2 REMARK 470 ASP A 190 CG OD1 OD2 REMARK 470 LYS A 206 CE NZ REMARK 470 LYS A 214 CD CE NZ REMARK 470 GLU A 222 OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -158.93 -150.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 301 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 202 NE2 REMARK 620 2 HIS A 204 NE2 85.3 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 301 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KW4 RELATED DB: PDB REMARK 900 RELATED ID: 4KW9 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 EMERALD GFP HAS LEU AT POSITION 64, THR AT 65, ALA AT 72, LYS AT REMARK 999 149, THR AT 153, 167, LEU AT 231. RESIDUES THR 65, TYR 66, GLY 67 REMARK 999 FORM A CHROMOPHORE CRO 66 DBREF 4KW8 A 2 238 UNP P42212 GFP_AEQVI 2 238 SEQADV 4KW8 GLY A -2 UNP P42212 EXPRESSION TAG SEQADV 4KW8 SER A -1 UNP P42212 EXPRESSION TAG SEQADV 4KW8 MET A 0 UNP P42212 EXPRESSION TAG SEQADV 4KW8 VAL A 1 UNP P42212 EXPRESSION TAG SEQADV 4KW8 LEU A 64 UNP P42212 PHE 64 SEE REMARK 999 SEQADV 4KW8 CRO A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 4KW8 CRO A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4KW8 CRO A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4KW8 ALA A 72 UNP P42212 SER 72 SEE REMARK 999 SEQADV 4KW8 HIS A 147 UNP P42212 SER 147 ENGINEERED MUTATION SEQADV 4KW8 LYS A 149 UNP P42212 ASN 149 SEE REMARK 999 SEQADV 4KW8 THR A 153 UNP P42212 MET 153 SEE REMARK 999 SEQADV 4KW8 THR A 167 UNP P42212 ILE 167 SEE REMARK 999 SEQADV 4KW8 HIS A 202 UNP P42212 SER 202 ENGINEERED MUTATION SEQADV 4KW8 HIS A 204 UNP P42212 GLN 204 ENGINEERED MUTATION SEQADV 4KW8 LYS A 206 UNP P42212 ALA 206 ENGINEERED MUTATION SEQADV 4KW8 LEU A 231 UNP P42212 HIS 231 SEE REMARK 999 SEQRES 1 A 239 GLY SER MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 A 239 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 A 239 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP SEQRES 4 A 239 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 A 239 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 A 239 THR LEU CRO VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS SEQRES 7 A 239 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 A 239 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP SEQRES 9 A 239 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 A 239 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 A 239 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 A 239 TYR ASN TYR ASN HIS HIS LYS VAL TYR ILE THR ALA ASP SEQRES 13 A 239 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS THR ARG SEQRES 14 A 239 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 A 239 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 A 239 LEU PRO ASP ASN HIS TYR LEU HIS THR HIS SER LYS LEU SEQRES 17 A 239 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 A 239 LEU GLU PHE VAL THR ALA ALA GLY ILE THR LEU GLY MET SEQRES 19 A 239 ASP GLU LEU TYR LYS MODRES 4KW8 CRO A 66 GLY MODRES 4KW8 CRO A 66 TYR MODRES 4KW8 CRO A 66 GLY HET CRO A 66 22 HET NI A 301 1 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM NI NICKEL (II) ION HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO C15 H17 N3 O5 FORMUL 2 NI NI 2+ FORMUL 3 HOH *83(H2 O) HELIX 1 1 GLY A 4 THR A 9 5 6 HELIX 2 2 PRO A 56 VAL A 61 1 6 HELIX 3 3 VAL A 68 ALA A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 SHEET 1 A12 VAL A 12 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 A12 LYS A 41 CYS A 48 -1 O LYS A 41 N ASP A 36 SHEET 4 A12 HIS A 217 ALA A 227 -1 O MET A 218 N PHE A 46 SHEET 5 A12 HIS A 199 SER A 208 -1 N HIS A 202 O THR A 225 SHEET 6 A12 HIS A 148 ASP A 155 -1 N ILE A 152 O HIS A 199 SHEET 7 A12 GLY A 160 ASN A 170 -1 O LYS A 162 N THR A 153 SHEET 8 A12 VAL A 176 PRO A 187 -1 O GLN A 183 N VAL A 163 SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 A12 ASN A 105 GLU A 115 -1 O THR A 108 N ARG A 96 SHEET 11 A12 THR A 118 ILE A 128 -1 O VAL A 120 N LYS A 113 SHEET 12 A12 VAL A 12 VAL A 22 1 N GLU A 17 O ILE A 123 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.35 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.30 LINK NE2 HIS A 202 NI NI A 301 1555 1555 2.08 LINK NE2 HIS A 204 NI NI A 301 1555 1555 2.04 CISPEP 1 MET A 88 PRO A 89 0 1.82 SITE 1 AC1 3 ASP A 117 HIS A 202 HIS A 204 CRYST1 51.623 63.021 66.347 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.019371 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015868 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015072 0.00000