HEADER FLUORESCENT PROTEIN 23-MAY-13 4KW9 TITLE CRYSTAL STRUCTURE OF GREEN FLUORESCENT PROTEIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: GREEN FLUORESCENT PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES; COMPND 6 OTHER_DETAILS: THE PROTEIN IN THIS STRUCTURE IS A VERSION OF GFP COMPND 7 CALLED EMERALD GFP SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: AEQUOREA VICTORIA; SOURCE 3 ORGANISM_COMMON: JELLYFISH; SOURCE 4 ORGANISM_TAXID: 6100; SOURCE 5 GENE: GFP; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS BETA BARREL, FLUORESCENT PROTEIN, CHROMOPHORE EXPDTA X-RAY DIFFRACTION AUTHOR T.J.BARNARD,X.YU,N.NOINAJ,J.W.TARASKA REVDAT 2 21-DEC-22 4KW9 1 REMARK SEQADV LINK REVDAT 1 09-APR-14 4KW9 0 JRNL AUTH T.J.BARNARD,X.YU,N.NOINAJ,J.W.TARASKA JRNL TITL CRYSTAL STRUCTURE OF GREEN FLUORESCENT PROTEIN JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.1_1168 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.33 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.390 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 28738 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.178 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.211 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 6.830 REMARK 3 FREE R VALUE TEST SET COUNT : 1962 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.3304 - 5.3891 1.00 1884 139 0.2217 0.2213 REMARK 3 2 5.3891 - 4.2822 1.00 1871 139 0.1342 0.1660 REMARK 3 3 4.2822 - 3.7423 1.00 1900 141 0.1419 0.1849 REMARK 3 4 3.7423 - 3.4008 1.00 1882 140 0.1522 0.2106 REMARK 3 5 3.4008 - 3.1574 1.00 1879 136 0.1411 0.1585 REMARK 3 6 3.1574 - 2.9714 1.00 1895 137 0.1494 0.1886 REMARK 3 7 2.9714 - 2.8227 1.00 1887 136 0.1576 0.1883 REMARK 3 8 2.8227 - 2.7000 1.00 1885 134 0.1514 0.1800 REMARK 3 9 2.7000 - 2.5961 1.00 1868 138 0.1557 0.2092 REMARK 3 10 2.5961 - 2.5066 1.00 1889 132 0.1419 0.1948 REMARK 3 11 2.5066 - 2.4282 1.00 1869 138 0.1501 0.2044 REMARK 3 12 2.4282 - 2.3589 1.00 1910 143 0.1543 0.2055 REMARK 3 13 2.3589 - 2.2968 1.00 1875 140 0.1643 0.2134 REMARK 3 14 2.2968 - 2.2408 1.00 1883 137 0.1673 0.1921 REMARK 3 15 2.2408 - 2.1899 1.00 1866 142 0.1709 0.2245 REMARK 3 16 2.1899 - 2.1433 1.00 1850 135 0.1777 0.1958 REMARK 3 17 2.1433 - 2.1004 1.00 1907 144 0.1881 0.2498 REMARK 3 18 2.1004 - 2.0608 1.00 1873 130 0.2137 0.2387 REMARK 3 19 2.0608 - 2.0240 1.00 1903 140 0.2080 0.2408 REMARK 3 20 2.0240 - 1.9897 1.00 1885 140 0.2276 0.3079 REMARK 3 21 1.9897 - 1.9576 0.99 1881 135 0.2317 0.2741 REMARK 3 22 1.9576 - 1.9275 1.00 1850 135 0.2625 0.2619 REMARK 3 23 1.9275 - 1.8992 0.99 1894 140 0.2635 0.2978 REMARK 3 24 1.8992 - 1.8724 0.99 1862 140 0.2802 0.2805 REMARK 3 25 1.8724 - 1.8471 0.99 1903 138 0.2983 0.3362 REMARK 3 26 1.8471 - 1.8231 0.99 1841 137 0.3178 0.3248 REMARK 3 27 1.8231 - 1.8000 0.99 1866 133 0.3392 0.3262 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.210 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 26.51 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.014 1804 REMARK 3 ANGLE : 1.397 2450 REMARK 3 CHIRALITY : 0.076 265 REMARK 3 PLANARITY : 0.006 310 REMARK 3 DIHEDRAL : 14.730 636 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 2 THROUGH 68 ) REMARK 3 ORIGIN FOR THE GROUP (A): 28.3772 -2.7652 6.0641 REMARK 3 T TENSOR REMARK 3 T11: 0.1403 T22: 0.0877 REMARK 3 T33: 0.1051 T12: 0.0332 REMARK 3 T13: -0.0110 T23: 0.0036 REMARK 3 L TENSOR REMARK 3 L11: 3.6071 L22: 2.1991 REMARK 3 L33: 3.0666 L12: 0.4564 REMARK 3 L13: 0.0007 L23: -1.1849 REMARK 3 S TENSOR REMARK 3 S11: 0.0439 S12: -0.0628 S13: -0.1376 REMARK 3 S21: -0.1707 S22: -0.0779 S23: -0.0075 REMARK 3 S31: 0.3007 S32: 0.1661 S33: 0.0267 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 69 THROUGH 144 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.2169 4.8028 5.1341 REMARK 3 T TENSOR REMARK 3 T11: 0.1374 T22: 0.0911 REMARK 3 T33: 0.1077 T12: 0.0023 REMARK 3 T13: -0.0105 T23: -0.0130 REMARK 3 L TENSOR REMARK 3 L11: 3.5795 L22: 1.7561 REMARK 3 L33: 2.3514 L12: 0.4138 REMARK 3 L13: 0.0456 L23: -0.8408 REMARK 3 S TENSOR REMARK 3 S11: 0.0833 S12: 0.0887 S13: -0.1850 REMARK 3 S21: -0.0978 S22: 0.0232 S23: 0.0596 REMARK 3 S31: 0.0427 S32: -0.0469 S33: -0.0788 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 145 THROUGH 230 ) REMARK 3 ORIGIN FOR THE GROUP (A): 26.4904 6.6161 -0.5255 REMARK 3 T TENSOR REMARK 3 T11: 0.1354 T22: 0.1114 REMARK 3 T33: 0.1229 T12: -0.0098 REMARK 3 T13: 0.0144 T23: 0.0058 REMARK 3 L TENSOR REMARK 3 L11: 1.8410 L22: 1.9032 REMARK 3 L33: 3.0987 L12: -0.4302 REMARK 3 L13: -0.4589 L23: -1.0502 REMARK 3 S TENSOR REMARK 3 S11: 0.0838 S12: 0.0483 S13: -0.1268 REMARK 3 S21: 0.0003 S22: -0.1319 S23: 0.0739 REMARK 3 S31: 0.2092 S32: -0.0087 S33: 0.0188 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KW9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079873. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.2 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-BM REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.28 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 29365 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 6.300 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 8.1000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.86 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 5.50 REMARK 200 R MERGE FOR SHELL (I) : 0.76500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.0 REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 56.02 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.80 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 50 MM HEPES PH 8.2, 50 MM MGCL2, 22% REMARK 280 PEG4000, HANGING DROP, TEMPERATURE 294K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.47100 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.39900 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.39900 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 28.73550 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.39900 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.39900 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 86.20650 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.39900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.39900 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 28.73550 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.39900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.39900 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 86.20650 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 57.47100 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 MET A 0 REMARK 465 VAL A 1 REMARK 465 GLU A 172 REMARK 465 ASP A 173 REMARK 465 GLY A 174 REMARK 465 SER A 175 REMARK 465 LEU A 231 REMARK 465 GLY A 232 REMARK 465 MET A 233 REMARK 465 ASP A 234 REMARK 465 GLU A 235 REMARK 465 LEU A 236 REMARK 465 TYR A 237 REMARK 465 LYS A 238 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CD CE NZ REMARK 470 GLU A 5 CD OE1 OE2 REMARK 470 GLU A 6 CD OE1 OE2 REMARK 470 GLU A 32 CD OE1 OE2 REMARK 470 LYS A 52 CE NZ REMARK 470 LYS A 107 CE NZ REMARK 470 LYS A 113 CE NZ REMARK 470 LYS A 131 CE NZ REMARK 470 GLU A 132 CG CD OE1 OE2 REMARK 470 ASP A 133 CG OD1 OD2 REMARK 470 GLU A 142 CG CD OE1 OE2 REMARK 470 ASN A 144 CB CG OD1 ND2 REMARK 470 GLN A 157 CG CD OE1 NE2 REMARK 470 LYS A 158 CE NZ REMARK 470 LYS A 162 NZ REMARK 470 LYS A 166 CD CE NZ REMARK 470 ARG A 168 CG CD NE CZ NH1 NH2 REMARK 470 GLN A 184 CD OE1 NE2 REMARK 470 LYS A 206 CE NZ REMARK 470 LYS A 214 CD CE NZ REMARK 470 THR A 230 OG1 CG2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HG SER A 86 H LEU A 194 1.33 REMARK 500 O HOH A 550 O HOH A 592 1.99 REMARK 500 O HOH A 450 O HOH A 468 2.11 REMARK 500 O HOH A 453 O HOH A 526 2.17 REMARK 500 O HOH A 518 O HOH A 589 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 103 -157.65 -155.03 REMARK 500 HIS A 139 73.39 46.88 REMARK 500 ASN A 144 -123.51 -138.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 305 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 124 OE2 REMARK 620 2 GLU A 124 OE1 63.4 REMARK 620 3 HOH A 429 O 82.8 116.2 REMARK 620 4 HOH A 448 O 84.4 117.6 110.1 REMARK 620 5 HOH A 513 O 135.2 71.8 118.6 118.1 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 304 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 139 ND1 REMARK 620 2 HOH A 405 O 119.0 REMARK 620 3 HOH A 562 O 110.4 111.3 REMARK 620 4 HOH A 605 O 99.0 112.6 102.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 302 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 147 NE2 REMARK 620 2 HOH A 415 O 114.5 REMARK 620 3 HOH A 525 O 93.4 100.9 REMARK 620 4 HOH A 586 O 103.8 141.3 70.4 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 303 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 169 ND1 REMARK 620 2 HOH A 404 O 109.0 REMARK 620 3 HOH A 410 O 109.8 119.8 REMARK 620 4 HOH A 439 O 107.5 102.3 107.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 301 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 202 ND1 REMARK 620 2 HIS A 204 NE2 121.1 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 305 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 306 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KW4 RELATED DB: PDB REMARK 900 RELATED ID: 4KW8 RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 EMERALD GFP HAS LEU AT POSITION 64, THR AT 65, ALA AT 72, LYS AT REMARK 999 149, THR AT 153, 167, LEU AT 231. RESIDUES THR 65, TYR 66, GLY 67 REMARK 999 FORM A CHROMOPHORE CRO 66 DBREF 4KW9 A 2 238 UNP P42212 GFP_AEQVI 2 238 SEQADV 4KW9 GLY A -2 UNP P42212 EXPRESSION TAG SEQADV 4KW9 SER A -1 UNP P42212 EXPRESSION TAG SEQADV 4KW9 MET A 0 UNP P42212 EXPRESSION TAG SEQADV 4KW9 VAL A 1 UNP P42212 EXPRESSION TAG SEQADV 4KW9 LEU A 64 UNP P42212 PHE 64 SEE REMARK 999 SEQADV 4KW9 CRO A 66 UNP P42212 SER 65 CHROMOPHORE SEQADV 4KW9 CRO A 66 UNP P42212 TYR 66 CHROMOPHORE SEQADV 4KW9 CRO A 66 UNP P42212 GLY 67 CHROMOPHORE SEQADV 4KW9 ALA A 72 UNP P42212 SER 72 SEE REMARK 999 SEQADV 4KW9 HIS A 147 UNP P42212 SER 147 ENGINEERED MUTATION SEQADV 4KW9 LYS A 149 UNP P42212 ASN 149 SEE REMARK 999 SEQADV 4KW9 THR A 153 UNP P42212 MET 153 SEE REMARK 999 SEQADV 4KW9 THR A 167 UNP P42212 ILE 167 SEE REMARK 999 SEQADV 4KW9 HIS A 202 UNP P42212 SER 202 ENGINEERED MUTATION SEQADV 4KW9 HIS A 204 UNP P42212 GLN 204 ENGINEERED MUTATION SEQADV 4KW9 LYS A 206 UNP P42212 ALA 206 ENGINEERED MUTATION SEQADV 4KW9 LEU A 231 UNP P42212 HIS 231 SEE REMARK 999 SEQRES 1 A 239 GLY SER MET VAL SER LYS GLY GLU GLU LEU PHE THR GLY SEQRES 2 A 239 VAL VAL PRO ILE LEU VAL GLU LEU ASP GLY ASP VAL ASN SEQRES 3 A 239 GLY HIS LYS PHE SER VAL SER GLY GLU GLY GLU GLY ASP SEQRES 4 A 239 ALA THR TYR GLY LYS LEU THR LEU LYS PHE ILE CYS THR SEQRES 5 A 239 THR GLY LYS LEU PRO VAL PRO TRP PRO THR LEU VAL THR SEQRES 6 A 239 THR LEU CRO VAL GLN CYS PHE ALA ARG TYR PRO ASP HIS SEQRES 7 A 239 MET LYS GLN HIS ASP PHE PHE LYS SER ALA MET PRO GLU SEQRES 8 A 239 GLY TYR VAL GLN GLU ARG THR ILE PHE PHE LYS ASP ASP SEQRES 9 A 239 GLY ASN TYR LYS THR ARG ALA GLU VAL LYS PHE GLU GLY SEQRES 10 A 239 ASP THR LEU VAL ASN ARG ILE GLU LEU LYS GLY ILE ASP SEQRES 11 A 239 PHE LYS GLU ASP GLY ASN ILE LEU GLY HIS LYS LEU GLU SEQRES 12 A 239 TYR ASN TYR ASN HIS HIS LYS VAL TYR ILE THR ALA ASP SEQRES 13 A 239 LYS GLN LYS ASN GLY ILE LYS VAL ASN PHE LYS THR ARG SEQRES 14 A 239 HIS ASN ILE GLU ASP GLY SER VAL GLN LEU ALA ASP HIS SEQRES 15 A 239 TYR GLN GLN ASN THR PRO ILE GLY ASP GLY PRO VAL LEU SEQRES 16 A 239 LEU PRO ASP ASN HIS TYR LEU HIS THR HIS SER LYS LEU SEQRES 17 A 239 SER LYS ASP PRO ASN GLU LYS ARG ASP HIS MET VAL LEU SEQRES 18 A 239 LEU GLU PHE VAL THR ALA ALA GLY ILE THR LEU GLY MET SEQRES 19 A 239 ASP GLU LEU TYR LYS MODRES 4KW9 CRO A 66 GLY MODRES 4KW9 CRO A 66 TYR MODRES 4KW9 CRO A 66 GLY HET CRO A 66 22 HET ZN A 301 1 HET ZN A 302 1 HET ZN A 303 1 HET ZN A 304 1 HET ZN A 305 1 HET CL A 306 1 HETNAM CRO {2-[(1R,2R)-1-AMINO-2-HYDROXYPROPYL]-4-(4- HETNAM 2 CRO HYDROXYBENZYLIDENE)-5-OXO-4,5-DIHYDRO-1H-IMIDAZOL-1- HETNAM 3 CRO YL}ACETIC ACID HETNAM ZN ZINC ION HETNAM CL CHLORIDE ION HETSYN CRO PEPTIDE DERIVED CHROMOPHORE FORMUL 1 CRO C15 H17 N3 O5 FORMUL 2 ZN 5(ZN 2+) FORMUL 7 CL CL 1- FORMUL 8 HOH *214(H2 O) HELIX 1 1 SER A 2 LEU A 7 1 6 HELIX 2 2 PRO A 56 VAL A 61 5 6 HELIX 3 3 VAL A 68 ALA A 72 5 5 HELIX 4 4 PRO A 75 HIS A 81 5 7 HELIX 5 5 ASP A 82 ALA A 87 1 6 HELIX 6 6 LYS A 156 ASN A 159 5 4 SHEET 1 A12 VAL A 11 VAL A 22 0 SHEET 2 A12 HIS A 25 ASP A 36 -1 O PHE A 27 N GLY A 20 SHEET 3 A12 LYS A 41 CYS A 48 -1 O ILE A 47 N SER A 30 SHEET 4 A12 HIS A 217 ALA A 227 -1 O MET A 218 N PHE A 46 SHEET 5 A12 HIS A 199 SER A 208 -1 N HIS A 202 O THR A 225 SHEET 6 A12 TYR A 145 ASP A 155 -1 N ASN A 146 O SER A 205 SHEET 7 A12 GLY A 160 HIS A 169 -1 O GLY A 160 N ASP A 155 SHEET 8 A12 GLN A 177 PRO A 187 -1 O HIS A 181 N PHE A 165 SHEET 9 A12 TYR A 92 PHE A 100 -1 N VAL A 93 O THR A 186 SHEET 10 A12 ASN A 105 GLU A 115 -1 O ALA A 110 N GLN A 94 SHEET 11 A12 THR A 118 ILE A 128 -1 O THR A 118 N GLU A 115 SHEET 12 A12 VAL A 11 VAL A 22 1 N ASP A 21 O GLY A 127 LINK C LEU A 64 N1 CRO A 66 1555 1555 1.34 LINK C3 CRO A 66 N VAL A 68 1555 1555 1.33 LINK OE2 GLU A 124 ZN ZN A 305 1555 1555 2.00 LINK OE1 GLU A 124 ZN ZN A 305 1555 1555 2.16 LINK ND1 HIS A 139 ZN ZN A 304 1555 1555 2.05 LINK NE2 HIS A 147 ZN ZN A 302 1555 1555 2.09 LINK ND1 HIS A 169 ZN ZN A 303 1555 1555 2.04 LINK ND1 HIS A 202 ZN ZN A 301 1555 1555 2.01 LINK NE2 HIS A 204 ZN ZN A 301 1555 1555 2.00 LINK ZN ZN A 302 O HOH A 415 1555 1555 2.14 LINK ZN ZN A 302 O HOH A 525 1555 1555 2.11 LINK ZN ZN A 302 O HOH A 586 1555 1555 2.09 LINK ZN ZN A 303 O HOH A 404 1555 1555 2.27 LINK ZN ZN A 303 O HOH A 410 1555 1555 2.23 LINK ZN ZN A 303 O HOH A 439 1555 1555 2.15 LINK ZN ZN A 304 O HOH A 405 1555 1555 2.22 LINK ZN ZN A 304 O HOH A 562 1555 1555 2.08 LINK ZN ZN A 304 O HOH A 605 1555 1555 2.15 LINK ZN ZN A 305 O HOH A 429 1555 1555 2.18 LINK ZN ZN A 305 O HOH A 448 1555 1555 2.16 LINK ZN ZN A 305 O HOH A 513 1555 1555 2.17 CISPEP 1 MET A 88 PRO A 89 0 8.46 SITE 1 AC1 4 GLU A 17 HIS A 202 HIS A 204 CL A 306 SITE 1 AC2 4 HIS A 147 HOH A 415 HOH A 525 HOH A 586 SITE 1 AC3 4 HIS A 169 HOH A 404 HOH A 410 HOH A 439 SITE 1 AC4 4 HIS A 139 HOH A 405 HOH A 562 HOH A 605 SITE 1 AC5 6 GLU A 124 ILE A 229 THR A 230 HOH A 429 SITE 2 AC5 6 HOH A 448 HOH A 513 SITE 1 AC6 7 GLU A 17 HIS A 148 LYS A 149 HIS A 202 SITE 2 AC6 7 HIS A 204 ZN A 301 HOH A 499 CRYST1 72.798 72.798 114.942 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013737 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013737 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008700 0.00000