HEADER OXIDOREDUCTASE 24-MAY-13 4KWH TITLE THE CRYSTAL STRUCTURE OF ANGUCYCLINE C-6 KETOREDUCTASE LANV WITH BOUND TITLE 2 NADP COMPND MOL_ID: 1; COMPND 2 MOLECULE: REDUCTASE HOMOLOG; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES CYANOGENUS; SOURCE 3 ORGANISM_TAXID: 80860; SOURCE 4 GENE: LANV; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: TOP10; SOURCE 8 EXPRESSION_SYSTEM_PLASMID: PBAD KEYWDS ROSSMANN FOLD, KETOREDUCTASE, NADPH, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR P.PAANANEN,P.PATRIKAINEN,P.KALLIO,P.MANTSALA,J.NIEMI,L.NIIRANEN, AUTHOR 2 M.METSA-KETELA REVDAT 4 20-SEP-23 4KWH 1 REMARK SEQADV REVDAT 3 12-NOV-14 4KWH 1 KEYWDS REVDAT 2 05-FEB-14 4KWH 1 JRNL REVDAT 1 31-JUL-13 4KWH 0 JRNL AUTH P.PAANANEN,P.PATRIKAINEN,P.KALLIO,P.MANTSALA,J.NIEMI, JRNL AUTH 2 L.NIIRANEN,M.METSA-KETELA JRNL TITL STRUCTURAL AND FUNCTIONAL ANALYSIS OF ANGUCYCLINE C-6 JRNL TITL 2 KETOREDUCTASE LANV INVOLVED IN LANDOMYCIN BIOSYNTHESIS. JRNL REF BIOCHEMISTRY V. 52 5304 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23848284 JRNL DOI 10.1021/BI400712Q REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 51201 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.149 REMARK 3 R VALUE (WORKING SET) : 0.147 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2597 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3247 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.1700 REMARK 3 BIN FREE R VALUE SET COUNT : 201 REMARK 3 BIN FREE R VALUE : 0.2230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3681 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 118 REMARK 3 SOLVENT ATOMS : 445 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.04 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.82 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.48000 REMARK 3 B22 (A**2) : -0.48000 REMARK 3 B33 (A**2) : 0.96000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.096 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.056 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 3.129 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.971 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.965 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4004 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 2630 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5458 ; 1.352 ; 1.998 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6411 ; 0.981 ; 3.012 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 539 ; 5.049 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 151 ;30.203 ;23.179 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 614 ;11.213 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 34 ;12.214 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 636 ; 0.187 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4593 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 823 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 253 REMARK 3 ORIGIN FOR THE GROUP (A): 23.1914 -0.1312 25.7325 REMARK 3 T TENSOR REMARK 3 T11: 0.0239 T22: 0.0275 REMARK 3 T33: 0.0228 T12: -0.0039 REMARK 3 T13: 0.0076 T23: -0.0107 REMARK 3 L TENSOR REMARK 3 L11: 0.6839 L22: 0.4840 REMARK 3 L33: 0.4359 L12: 0.1113 REMARK 3 L13: 0.1878 L23: 0.0959 REMARK 3 S TENSOR REMARK 3 S11: 0.0036 S12: 0.0579 S13: -0.0190 REMARK 3 S21: -0.0328 S22: 0.0202 S23: -0.0991 REMARK 3 S31: -0.0335 S32: -0.0002 S33: -0.0238 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B -3 B 253 REMARK 3 ORIGIN FOR THE GROUP (A): 1.2586 21.9363 30.3115 REMARK 3 T TENSOR REMARK 3 T11: 0.0317 T22: 0.0231 REMARK 3 T33: 0.0370 T12: 0.0123 REMARK 3 T13: -0.0035 T23: -0.0139 REMARK 3 L TENSOR REMARK 3 L11: 0.5263 L22: 0.7071 REMARK 3 L33: 0.3109 L12: 0.1004 REMARK 3 L13: 0.0624 L23: 0.1692 REMARK 3 S TENSOR REMARK 3 S11: -0.0265 S12: -0.0456 S13: 0.1353 REMARK 3 S21: -0.0107 S22: 0.0235 S23: 0.0402 REMARK 3 S31: -0.0289 S32: 0.0074 S33: 0.0030 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4KWH COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 30-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000079881. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-SEP-11 REMARK 200 TEMPERATURE (KELVIN) : 100.0 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-4 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9393 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL, SI(111) OR REMARK 200 SI(311) REMARK 200 OPTICS : TOROIDAL MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 56150 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 46.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.06600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 27.1900 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.69 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.6 REMARK 200 DATA REDUNDANCY IN SHELL : 13.90 REMARK 200 R MERGE FOR SHELL (I) : 0.68800 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.050 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MOLREP, BALBES REMARK 200 STARTING MODEL: PDB ENTRY 3ICC REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 40.49 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.07 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS-PROPANE, 0.2M SODIUM REMARK 280 ACETATE, 18% PEG3350 , PH 6.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 294.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 53.15000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 46.25000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 46.25000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 26.57500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 46.25000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 46.25000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 79.72500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 46.25000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 46.25000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 26.57500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 46.25000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 46.25000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 79.72500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 53.15000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TETRAMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 18620 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 34640 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -92.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 53.15000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -9 REMARK 465 ALA A -8 REMARK 465 HIS A -7 REMARK 465 HIS A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 ARG A 0 REMARK 465 SER A 1 REMARK 465 MET B -9 REMARK 465 ALA B -8 REMARK 465 HIS B -7 REMARK 465 HIS B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 204 CG CD OE1 OE2 REMARK 470 HIS B -3 CG ND1 CD2 CE1 NE2 REMARK 470 HIS B -1 CG ND1 CD2 CE1 NE2 REMARK 470 GLN B 201 CG CD OE1 NE2 REMARK 470 GLU B 204 CG CD OE1 OE2 REMARK 470 GLU B 207 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 122 -50.59 -130.12 REMARK 500 SER A 146 -137.77 -97.45 REMARK 500 ALA B 63 116.98 -160.25 REMARK 500 ALA B 122 -50.93 -129.53 REMARK 500 SER B 146 -133.50 -98.00 REMARK 500 ALA B 246 43.80 -109.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACY B 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KWI RELATED DB: PDB REMARK 900 THE CRYSTAL STRUCTURE OF ANGUCYCLINE C-6 KETOREDUCTASE LANV WITH REMARK 900 BOUND NADP AND 11-DEOXY-6-OXYLANDOMYCINONE DBREF 4KWH A 2 253 UNP Q9ZGC1 Q9ZGC1_STRCY 2 253 DBREF 4KWH B 2 253 UNP Q9ZGC1 Q9ZGC1_STRCY 2 253 SEQADV 4KWH MET A -9 UNP Q9ZGC1 INITIATING METHIONINE SEQADV 4KWH ALA A -8 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS A -7 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS A -6 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS A -5 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS A -4 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS A -3 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS A -2 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS A -1 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH ARG A 0 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH SER A 1 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH MET B -9 UNP Q9ZGC1 INITIATING METHIONINE SEQADV 4KWH ALA B -8 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS B -7 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS B -6 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS B -5 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS B -4 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS B -3 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS B -2 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH HIS B -1 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH ARG B 0 UNP Q9ZGC1 EXPRESSION TAG SEQADV 4KWH SER B 1 UNP Q9ZGC1 EXPRESSION TAG SEQRES 1 A 263 MET ALA HIS HIS HIS HIS HIS HIS HIS ARG SER GLY ASN SEQRES 2 A 263 LEU THR GLY LYS THR ALA LEU VAL THR GLY ALA SER ARG SEQRES 3 A 263 GLY ILE GLY ARG ALA ILE ALA GLU LYS LEU GLY TYR ALA SEQRES 4 A 263 GLY ALA LEU VAL ALA VAL HIS TYR ALA THR GLY ALA ASP SEQRES 5 A 263 ALA ALA ALA GLU VAL ALA GLU SER ILE GLU LYS ASP GLY SEQRES 6 A 263 GLY ARG ALA PHE THR VAL LYS ALA GLU LEU GLY VAL PRO SEQRES 7 A 263 GLY ASP VAL ASP VAL LEU PHE GLU GLY LEU GLU ARG GLY SEQRES 8 A 263 LEU LYS GLU ARG THR GLY ALA THR ASP LEU ASP ILE LEU SEQRES 9 A 263 VAL ASN ASN ALA GLY VAL MET ALA MET GLY ALA PRO GLU SEQRES 10 A 263 GLU VAL THR PRO GLU MET PHE ASP ARG MET MET ALA VAL SEQRES 11 A 263 ASN ALA LYS ALA PRO PHE PHE ILE VAL GLN ARG ALA LEU SEQRES 12 A 263 SER VAL MET PRO ASP GLY GLY ARG ILE ILE ASN VAL SER SEQRES 13 A 263 SER GLY LEU THR ARG VAL ALA SER PRO ASP GLN VAL THR SEQRES 14 A 263 TYR GLY MET SER LYS GLY ALA LEU GLU GLN ILE ALA LEU SEQRES 15 A 263 HIS PHE SER ARG HIS LEU GLY SER ARG ARG ILE THR VAL SEQRES 16 A 263 ASN SER VAL ALA PRO GLY SER THR ASP ASN GLY SER ALA SEQRES 17 A 263 LEU PHE GLN ILE PRO GLU VAL ARG GLU THR LEU SER GLN SEQRES 18 A 263 LEU SER THR PHE GLY GLU VAL ALA GLU PRO ALA ALA ILE SEQRES 19 A 263 ALA ASP VAL VAL ALA PHE LEU ALA SER GLU ASP ALA ARG SEQRES 20 A 263 TRP ILE THR GLY ALA PHE ILE ASP ALA SER GLY GLY THR SEQRES 21 A 263 LEU LEU GLY SEQRES 1 B 263 MET ALA HIS HIS HIS HIS HIS HIS HIS ARG SER GLY ASN SEQRES 2 B 263 LEU THR GLY LYS THR ALA LEU VAL THR GLY ALA SER ARG SEQRES 3 B 263 GLY ILE GLY ARG ALA ILE ALA GLU LYS LEU GLY TYR ALA SEQRES 4 B 263 GLY ALA LEU VAL ALA VAL HIS TYR ALA THR GLY ALA ASP SEQRES 5 B 263 ALA ALA ALA GLU VAL ALA GLU SER ILE GLU LYS ASP GLY SEQRES 6 B 263 GLY ARG ALA PHE THR VAL LYS ALA GLU LEU GLY VAL PRO SEQRES 7 B 263 GLY ASP VAL ASP VAL LEU PHE GLU GLY LEU GLU ARG GLY SEQRES 8 B 263 LEU LYS GLU ARG THR GLY ALA THR ASP LEU ASP ILE LEU SEQRES 9 B 263 VAL ASN ASN ALA GLY VAL MET ALA MET GLY ALA PRO GLU SEQRES 10 B 263 GLU VAL THR PRO GLU MET PHE ASP ARG MET MET ALA VAL SEQRES 11 B 263 ASN ALA LYS ALA PRO PHE PHE ILE VAL GLN ARG ALA LEU SEQRES 12 B 263 SER VAL MET PRO ASP GLY GLY ARG ILE ILE ASN VAL SER SEQRES 13 B 263 SER GLY LEU THR ARG VAL ALA SER PRO ASP GLN VAL THR SEQRES 14 B 263 TYR GLY MET SER LYS GLY ALA LEU GLU GLN ILE ALA LEU SEQRES 15 B 263 HIS PHE SER ARG HIS LEU GLY SER ARG ARG ILE THR VAL SEQRES 16 B 263 ASN SER VAL ALA PRO GLY SER THR ASP ASN GLY SER ALA SEQRES 17 B 263 LEU PHE GLN ILE PRO GLU VAL ARG GLU THR LEU SER GLN SEQRES 18 B 263 LEU SER THR PHE GLY GLU VAL ALA GLU PRO ALA ALA ILE SEQRES 19 B 263 ALA ASP VAL VAL ALA PHE LEU ALA SER GLU ASP ALA ARG SEQRES 20 B 263 TRP ILE THR GLY ALA PHE ILE ASP ALA SER GLY GLY THR SEQRES 21 B 263 LEU LEU GLY HET NAP A 301 48 HET ACY A 302 4 HET PEG A 303 7 HET PEG A 304 7 HET NAP B 301 48 HET ACY B 302 4 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM ACY ACETIC ACID HETNAM PEG DI(HYDROXYETHYL)ETHER HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 ACY 2(C2 H4 O2) FORMUL 5 PEG 2(C4 H10 O3) FORMUL 9 HOH *445(H2 O) HELIX 1 1 ARG A 16 ALA A 29 1 14 HELIX 2 2 GLY A 40 ASP A 54 1 15 HELIX 3 3 GLY A 69 GLY A 87 1 19 HELIX 4 4 ALA A 105 VAL A 109 5 5 HELIX 5 5 THR A 110 ALA A 122 1 13 HELIX 6 6 ALA A 122 LEU A 133 1 12 HELIX 7 7 SER A 147 ARG A 151 5 5 HELIX 8 8 SER A 154 ASP A 156 5 3 HELIX 9 9 GLN A 157 LEU A 178 1 22 HELIX 10 10 GLY A 179 ARG A 182 5 4 HELIX 11 11 SER A 197 GLN A 201 5 5 HELIX 12 12 ILE A 202 GLN A 211 1 10 HELIX 13 13 GLU A 220 ALA A 232 1 13 HELIX 14 14 SER A 233 ARG A 237 5 5 HELIX 15 15 ARG B 16 ALA B 29 1 14 HELIX 16 16 GLY B 40 ASP B 54 1 15 HELIX 17 17 GLY B 69 GLY B 87 1 19 HELIX 18 18 ALA B 105 VAL B 109 5 5 HELIX 19 19 THR B 110 ALA B 122 1 13 HELIX 20 20 ALA B 122 LEU B 133 1 12 HELIX 21 21 SER B 147 ARG B 151 5 5 HELIX 22 22 SER B 154 ASP B 156 5 3 HELIX 23 23 GLN B 157 LEU B 178 1 22 HELIX 24 24 GLY B 179 ARG B 182 5 4 HELIX 25 25 SER B 197 ILE B 202 1 6 HELIX 26 26 ILE B 202 GLN B 211 1 10 HELIX 27 27 GLU B 220 ALA B 232 1 13 HELIX 28 28 SER B 233 ARG B 237 5 5 SHEET 1 A 7 ARG A 57 LYS A 62 0 SHEET 2 A 7 LEU A 32 TYR A 37 1 N VAL A 35 O PHE A 59 SHEET 3 A 7 THR A 8 VAL A 11 1 N ALA A 9 O ALA A 34 SHEET 4 A 7 ILE A 93 ASN A 96 1 O VAL A 95 N LEU A 10 SHEET 5 A 7 ARG A 141 VAL A 145 1 O ILE A 143 N LEU A 94 SHEET 6 A 7 THR A 184 PRO A 190 1 O VAL A 188 N ASN A 144 SHEET 7 A 7 PHE A 243 ALA A 246 1 O ILE A 244 N ALA A 189 SHEET 1 B 7 ARG B 57 LYS B 62 0 SHEET 2 B 7 LEU B 32 TYR B 37 1 N VAL B 35 O PHE B 59 SHEET 3 B 7 THR B 8 VAL B 11 1 N ALA B 9 O ALA B 34 SHEET 4 B 7 ILE B 93 ASN B 96 1 O VAL B 95 N LEU B 10 SHEET 5 B 7 ARG B 141 VAL B 145 1 O ILE B 143 N LEU B 94 SHEET 6 B 7 THR B 184 PRO B 190 1 O ASN B 186 N ASN B 144 SHEET 7 B 7 PHE B 243 ALA B 246 1 O ILE B 244 N SER B 187 SITE 1 AC1 36 GLY A 13 SER A 15 ARG A 16 GLY A 17 SITE 2 AC1 36 ILE A 18 HIS A 36 ALA A 38 THR A 39 SITE 3 AC1 36 GLY A 40 ALA A 63 GLU A 64 LEU A 65 SITE 4 AC1 36 ASN A 97 ALA A 98 GLY A 99 VAL A 100 SITE 5 AC1 36 MET A 101 ARG A 116 VAL A 120 VAL A 145 SITE 6 AC1 36 SER A 146 TYR A 160 LYS A 164 PRO A 190 SITE 7 AC1 36 GLY A 191 SER A 192 THR A 193 ASN A 195 SITE 8 AC1 36 ACY A 302 HOH A 415 HOH A 441 HOH A 458 SITE 9 AC1 36 HOH A 495 HOH A 507 HOH A 509 HOH A 562 SITE 1 AC2 6 SER A 147 LEU A 149 TYR A 160 NAP A 301 SITE 2 AC2 6 HOH A 454 HOH A 487 SITE 1 AC3 7 ASP A 70 PRO A 111 ALA A 124 PHE A 127 SITE 2 AC3 7 HOH A 414 HOH A 590 HOH A 635 SITE 1 AC4 2 ASP A 90 MET A 136 SITE 1 AC5 34 GLY B 13 SER B 15 ARG B 16 GLY B 17 SITE 2 AC5 34 ILE B 18 HIS B 36 ALA B 38 THR B 39 SITE 3 AC5 34 GLY B 40 ALA B 63 GLU B 64 LEU B 65 SITE 4 AC5 34 ASN B 97 ALA B 98 MET B 101 ARG B 116 SITE 5 AC5 34 VAL B 145 SER B 146 TYR B 160 LYS B 164 SITE 6 AC5 34 PRO B 190 GLY B 191 SER B 192 THR B 193 SITE 7 AC5 34 ASN B 195 ACY B 302 HOH B 416 HOH B 426 SITE 8 AC5 34 HOH B 455 HOH B 530 HOH B 566 HOH B 571 SITE 9 AC5 34 HOH B 572 HOH B 575 SITE 1 AC6 5 SER B 147 TYR B 160 NAP B 301 HOH B 431 SITE 2 AC6 5 HOH B 590 CRYST1 92.500 92.500 106.300 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010811 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010811 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009407 0.00000