HEADER HYDROLASE 29-MAY-13 4KZ9 TITLE CRYSTAL STRUCTURE OF AMPC BETA-LACTAMASE IN COMPLEX WITH FRAGMENT 41 TITLE 2 ((4R,4AS,8AS)-4-PHENYLDECAHYDROQUINOLIN-4-OL) COMPND MOL_ID: 1; COMPND 2 MOLECULE: BETA-LACTAMASE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 20-377; COMPND 5 SYNONYM: AMPC BETA-LACTAMASE, CEPHALOSPORINASE; COMPND 6 EC: 3.5.2.6; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ESCHERICHIA COLI; SOURCE 3 ORGANISM_TAXID: 83333; SOURCE 4 STRAIN: K12; SOURCE 5 GENE: AMPA, AMPC, B4150, JW4111; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: JM109; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: POGO295 KEYWDS AMPC BETA-LACTAMASE, CLASS C, HYDROLASE, CEPHALOSPORINASE EXPDTA X-RAY DIFFRACTION AUTHOR O.EIDAM,S.BARELIER,I.FISH,B.K.SHOICHET REVDAT 3 20-SEP-23 4KZ9 1 REMARK REVDAT 2 30-JUL-14 4KZ9 1 JRNL REVDAT 1 21-MAY-14 4KZ9 0 JRNL AUTH S.BARELIER,O.EIDAM,I.FISH,J.HOLLANDER,F.FIGAROA,R.NACHANE, JRNL AUTH 2 J.J.IRWIN,B.K.SHOICHET,G.SIEGAL JRNL TITL INCREASING CHEMICAL SPACE COVERAGE BY COMBINING EMPIRICAL JRNL TITL 2 AND COMPUTATIONAL FRAGMENT SCREENS. JRNL REF ACS CHEM.BIOL. V. 9 1528 2014 JRNL REFN ISSN 1554-8929 JRNL PMID 24807704 JRNL DOI 10.1021/CB5001636 REMARK 2 REMARK 2 RESOLUTION. 1.72 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.72 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.52 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.990 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 80291 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.193 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.670 REMARK 3 FREE R VALUE TEST SET COUNT : 2947 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 29.5227 - 4.7391 0.99 3896 143 0.1494 0.1960 REMARK 3 2 4.7391 - 3.7640 0.98 3752 173 0.1128 0.1423 REMARK 3 3 3.7640 - 3.2889 0.98 3780 138 0.1248 0.1465 REMARK 3 4 3.2889 - 2.9885 0.98 3751 154 0.1449 0.1896 REMARK 3 5 2.9885 - 2.7745 0.98 3707 164 0.1530 0.1937 REMARK 3 6 2.7745 - 2.6110 0.98 3721 155 0.1528 0.1934 REMARK 3 7 2.6110 - 2.4803 0.98 3710 146 0.1470 0.2129 REMARK 3 8 2.4803 - 2.3724 0.97 3703 146 0.1489 0.1780 REMARK 3 9 2.3724 - 2.2811 0.97 3726 127 0.1561 0.2019 REMARK 3 10 2.2811 - 2.2024 0.94 3606 111 0.2029 0.2826 REMARK 3 11 2.2024 - 2.1336 0.97 3665 166 0.1570 0.2078 REMARK 3 12 2.1336 - 2.0726 0.96 3633 151 0.1588 0.1910 REMARK 3 13 2.0726 - 2.0181 0.96 3670 143 0.1510 0.1737 REMARK 3 14 2.0181 - 1.9688 0.96 3699 128 0.1613 0.2126 REMARK 3 15 1.9688 - 1.9241 0.95 3645 132 0.1817 0.2114 REMARK 3 16 1.9241 - 1.8832 0.94 3592 112 0.2540 0.2827 REMARK 3 17 1.8832 - 1.8455 0.95 3634 118 0.1894 0.2301 REMARK 3 18 1.8455 - 1.8107 0.95 3624 131 0.1842 0.2254 REMARK 3 19 1.8107 - 1.7783 0.95 3643 141 0.1841 0.2352 REMARK 3 20 1.7783 - 1.7482 0.95 3605 142 0.1860 0.2199 REMARK 3 21 1.7482 - 1.7200 0.95 3582 126 0.1953 0.2126 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.660 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 23.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 20.32 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.013 5676 REMARK 3 ANGLE : 1.456 7786 REMARK 3 CHIRALITY : 0.098 855 REMARK 3 PLANARITY : 0.008 999 REMARK 3 DIHEDRAL : 12.570 2008 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: (CHAIN A AND RESID 4:66) REMARK 3 ORIGIN FOR THE GROUP (A): 18.8317 -10.8298 26.4698 REMARK 3 T TENSOR REMARK 3 T11: 0.1756 T22: 0.1037 REMARK 3 T33: 0.1067 T12: -0.0353 REMARK 3 T13: 0.0337 T23: -0.0147 REMARK 3 L TENSOR REMARK 3 L11: 1.7070 L22: 1.7296 REMARK 3 L33: 1.8258 L12: 0.5071 REMARK 3 L13: -0.2913 L23: -0.3082 REMARK 3 S TENSOR REMARK 3 S11: 0.0707 S12: -0.2437 S13: 0.0040 REMARK 3 S21: 0.3076 S22: -0.0476 S23: 0.1635 REMARK 3 S31: 0.1590 S32: -0.1057 S33: -0.0248 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: (CHAIN A AND RESID 67:182) REMARK 3 ORIGIN FOR THE GROUP (A): 39.8115 6.9535 8.1584 REMARK 3 T TENSOR REMARK 3 T11: 0.0596 T22: 0.1128 REMARK 3 T33: 0.0816 T12: -0.0072 REMARK 3 T13: 0.0008 T23: 0.0001 REMARK 3 L TENSOR REMARK 3 L11: 1.1198 L22: 2.5933 REMARK 3 L33: 1.5025 L12: 0.1580 REMARK 3 L13: -0.1846 L23: -0.3823 REMARK 3 S TENSOR REMARK 3 S11: -0.0253 S12: 0.1848 S13: 0.0477 REMARK 3 S21: -0.2178 S22: 0.0261 S23: -0.0709 REMARK 3 S31: -0.0003 S32: 0.0828 S33: -0.0017 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: (CHAIN A AND RESID 183:361) REMARK 3 ORIGIN FOR THE GROUP (A): 31.5386 -2.2575 22.6600 REMARK 3 T TENSOR REMARK 3 T11: 0.1185 T22: 0.0823 REMARK 3 T33: 0.0880 T12: 0.0107 REMARK 3 T13: -0.0076 T23: 0.0044 REMARK 3 L TENSOR REMARK 3 L11: 1.6914 L22: 1.5483 REMARK 3 L33: 0.9924 L12: 1.0455 REMARK 3 L13: -0.0034 L23: 0.1778 REMARK 3 S TENSOR REMARK 3 S11: 0.0770 S12: -0.1692 S13: 0.0015 REMARK 3 S21: 0.2459 S22: -0.0733 S23: -0.0408 REMARK 3 S31: 0.0903 S32: 0.0410 S33: 0.0010 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: (CHAIN B AND RESID 4:66) REMARK 3 ORIGIN FOR THE GROUP (A): 84.7870 -13.4368 21.6798 REMARK 3 T TENSOR REMARK 3 T11: 0.1100 T22: 0.1190 REMARK 3 T33: 0.1174 T12: 0.0380 REMARK 3 T13: 0.0108 T23: 0.0081 REMARK 3 L TENSOR REMARK 3 L11: 1.2911 L22: 2.3653 REMARK 3 L33: 2.3961 L12: -0.7973 REMARK 3 L13: -0.6902 L23: 0.5045 REMARK 3 S TENSOR REMARK 3 S11: -0.0398 S12: -0.0211 S13: -0.1361 REMARK 3 S21: -0.0516 S22: 0.0086 S23: -0.0920 REMARK 3 S31: 0.2927 S32: 0.2476 S33: 0.0273 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: (CHAIN B AND RESID 67:177) REMARK 3 ORIGIN FOR THE GROUP (A): 64.8122 9.8908 35.9713 REMARK 3 T TENSOR REMARK 3 T11: 0.0779 T22: 0.1182 REMARK 3 T33: 0.0715 T12: -0.0085 REMARK 3 T13: 0.0047 T23: -0.0021 REMARK 3 L TENSOR REMARK 3 L11: 0.8297 L22: 2.5099 REMARK 3 L33: 1.5823 L12: 0.0792 REMARK 3 L13: -0.1641 L23: 0.0122 REMARK 3 S TENSOR REMARK 3 S11: 0.0083 S12: -0.2080 S13: 0.0378 REMARK 3 S21: 0.2448 S22: 0.0295 S23: 0.0537 REMARK 3 S31: -0.0918 S32: -0.0001 S33: -0.0354 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: (CHAIN B AND RESID 178:361) REMARK 3 ORIGIN FOR THE GROUP (A): 72.6340 -3.4124 23.7585 REMARK 3 T TENSOR REMARK 3 T11: 0.0729 T22: 0.0842 REMARK 3 T33: 0.0854 T12: -0.0240 REMARK 3 T13: -0.0039 T23: -0.0100 REMARK 3 L TENSOR REMARK 3 L11: 1.0422 L22: 1.5542 REMARK 3 L33: 1.4627 L12: -0.8492 REMARK 3 L13: -0.1107 L23: -0.3904 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.0082 S13: -0.0285 REMARK 3 S21: -0.0748 S22: 0.0146 S23: -0.0096 REMARK 3 S31: 0.1250 S32: 0.0548 S33: -0.0075 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KZ9 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 05-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000079981. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 24-MAY-12 REMARK 200 TEMPERATURE (KELVIN) : 80 REMARK 200 PH : 8.8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.3.1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.115869 REMARK 200 MONOCHROMATOR : KHOZU DOUBLE FLAT CRYSTAL REMARK 200 SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 80298 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.720 REMARK 200 RESOLUTION RANGE LOW (A) : 29.518 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.7500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.72 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.50400 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.570 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: PDB ENTRY 1KE4 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.51 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.7 M POTASSIUM PHOSPHATE, PH 8.8, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 59.29000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 38.21000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 59.29000 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 38.21000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ILE A 284 REMARK 465 ASN A 285 REMARK 465 GLY A 286 REMARK 465 SER A 287 REMARK 465 ASP A 288 REMARK 465 ASN A 289 REMARK 465 LYS A 290 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 21 OE1 OE2 REMARK 470 GLN A 22 CG CD OE1 NE2 REMARK 470 LYS A 24 CG CD CE NZ REMARK 470 LYS A 37 CG CD CE NZ REMARK 470 LYS A 99 CG CD CE NZ REMARK 470 ARG A 204 NE CZ NH1 NH2 REMARK 470 GLU A 205 CG CD OE1 OE2 REMARK 470 LYS A 207 CG CD CE NZ REMARK 470 ASN A 244 CG OD1 ND2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 ASN A 279 CG OD1 ND2 REMARK 470 ASP A 281 CG OD1 OD2 REMARK 470 SER A 282 OG REMARK 470 ILE A 291 CG1 CG2 CD1 REMARK 470 LYS A 299 CG CD CE NZ REMARK 470 LYS B 37 CG CD CE NZ REMARK 470 LYS B 50 CE NZ REMARK 470 GLN B 52 CG CD OE1 NE2 REMARK 470 GLN B 57 CD OE1 NE2 REMARK 470 LYS B 126 CG CD CE NZ REMARK 470 LYS B 164 CE NZ REMARK 470 GLU B 205 CG CD OE1 OE2 REMARK 470 LYS B 207 CG CD CE NZ REMARK 470 ASN B 244 CG OD1 ND2 REMARK 470 LYS B 246 CG CD CE NZ REMARK 470 LYS B 299 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 87 OH TYR A 92 2.14 REMARK 500 OD2 ASP B 87 OH TYR B 92 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 126 -62.98 -106.08 REMARK 500 VAL A 178 -59.34 -125.80 REMARK 500 TYR A 221 20.21 -154.43 REMARK 500 ASN A 341 43.36 -101.47 REMARK 500 LYS B 126 -53.00 -126.07 REMARK 500 VAL B 178 -61.41 -121.44 REMARK 500 TYR B 221 20.73 -157.34 REMARK 500 ASN B 341 45.22 -96.08 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1U7 A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KZ3 RELATED DB: PDB REMARK 900 RELATED ID: 4KZ4 RELATED DB: PDB REMARK 900 RELATED ID: 4KZ5 RELATED DB: PDB REMARK 900 RELATED ID: 4KZ6 RELATED DB: PDB REMARK 900 RELATED ID: 4KZ7 RELATED DB: PDB REMARK 900 RELATED ID: 4KZ8 RELATED DB: PDB REMARK 900 RELATED ID: 4KZA RELATED DB: PDB REMARK 900 RELATED ID: 4KZB RELATED DB: PDB DBREF 4KZ9 A 4 361 UNP P00811 AMPC_ECOLI 20 377 DBREF 4KZ9 B 4 361 UNP P00811 AMPC_ECOLI 20 377 SEQRES 1 A 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 A 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 A 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 A 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 A 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 A 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 A 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 A 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 A 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 A 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 A 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 A 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 A 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 A 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 A 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 A 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 A 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 A 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 A 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 A 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 A 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 A 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 A 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 A 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 A 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 A 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 A 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 A 358 GLN ILE LEU ASN ALA LEU GLN SEQRES 1 B 358 ALA PRO GLN GLN ILE ASN ASP ILE VAL HIS ARG THR ILE SEQRES 2 B 358 THR PRO LEU ILE GLU GLN GLN LYS ILE PRO GLY MET ALA SEQRES 3 B 358 VAL ALA VAL ILE TYR GLN GLY LYS PRO TYR TYR PHE THR SEQRES 4 B 358 TRP GLY TYR ALA ASP ILE ALA LYS LYS GLN PRO VAL THR SEQRES 5 B 358 GLN GLN THR LEU PHE GLU LEU GLY SER VAL SER LYS THR SEQRES 6 B 358 PHE THR GLY VAL LEU GLY GLY ASP ALA ILE ALA ARG GLY SEQRES 7 B 358 GLU ILE LYS LEU SER ASP PRO THR THR LYS TYR TRP PRO SEQRES 8 B 358 GLU LEU THR ALA LYS GLN TRP ASN GLY ILE THR LEU LEU SEQRES 9 B 358 HIS LEU ALA THR TYR THR ALA GLY GLY LEU PRO LEU GLN SEQRES 10 B 358 VAL PRO ASP GLU VAL LYS SER SER SER ASP LEU LEU ARG SEQRES 11 B 358 PHE TYR GLN ASN TRP GLN PRO ALA TRP ALA PRO GLY THR SEQRES 12 B 358 GLN ARG LEU TYR ALA ASN SER SER ILE GLY LEU PHE GLY SEQRES 13 B 358 ALA LEU ALA VAL LYS PRO SER GLY LEU SER PHE GLU GLN SEQRES 14 B 358 ALA MET GLN THR ARG VAL PHE GLN PRO LEU LYS LEU ASN SEQRES 15 B 358 HIS THR TRP ILE ASN VAL PRO PRO ALA GLU GLU LYS ASN SEQRES 16 B 358 TYR ALA TRP GLY TYR ARG GLU GLY LYS ALA VAL HIS VAL SEQRES 17 B 358 SER PRO GLY ALA LEU ASP ALA GLU ALA TYR GLY VAL LYS SEQRES 18 B 358 SER THR ILE GLU ASP MET ALA ARG TRP VAL GLN SER ASN SEQRES 19 B 358 LEU LYS PRO LEU ASP ILE ASN GLU LYS THR LEU GLN GLN SEQRES 20 B 358 GLY ILE GLN LEU ALA GLN SER ARG TYR TRP GLN THR GLY SEQRES 21 B 358 ASP MET TYR GLN GLY LEU GLY TRP GLU MET LEU ASP TRP SEQRES 22 B 358 PRO VAL ASN PRO ASP SER ILE ILE ASN GLY SER ASP ASN SEQRES 23 B 358 LYS ILE ALA LEU ALA ALA ARG PRO VAL LYS ALA ILE THR SEQRES 24 B 358 PRO PRO THR PRO ALA VAL ARG ALA SER TRP VAL HIS LYS SEQRES 25 B 358 THR GLY ALA THR GLY GLY PHE GLY SER TYR VAL ALA PHE SEQRES 26 B 358 ILE PRO GLU LYS GLU LEU GLY ILE VAL MET LEU ALA ASN SEQRES 27 B 358 LYS ASN TYR PRO ASN PRO ALA ARG VAL ASP ALA ALA TRP SEQRES 28 B 358 GLN ILE LEU ASN ALA LEU GLN HET PO4 A 401 5 HET PO4 A 402 5 HET PO4 A 403 5 HET 1U7 A 404 17 HETNAM PO4 PHOSPHATE ION HETNAM 1U7 (4R,4AS,8AS)-4-PHENYLDECAHYDROQUINOLIN-4-OL FORMUL 3 PO4 3(O4 P 3-) FORMUL 6 1U7 C15 H21 N O FORMUL 7 HOH *941(H2 O) HELIX 1 1 PRO A 5 LYS A 24 1 20 HELIX 2 2 VAL A 65 ARG A 80 1 16 HELIX 3 3 PRO A 88 TRP A 93 1 6 HELIX 4 4 ALA A 98 ASN A 102 5 5 HELIX 5 5 THR A 105 THR A 111 1 7 HELIX 6 6 SER A 127 TRP A 138 1 12 HELIX 7 7 ALA A 151 VAL A 163 1 13 HELIX 8 8 SER A 169 VAL A 178 1 10 HELIX 9 9 PRO A 192 TYR A 199 5 8 HELIX 10 10 LEU A 216 TYR A 221 1 6 HELIX 11 11 THR A 226 LYS A 239 1 14 HELIX 12 12 PRO A 240 ILE A 243 5 4 HELIX 13 13 GLU A 245 GLN A 256 1 12 HELIX 14 14 PRO A 330 LYS A 332 5 3 HELIX 15 15 PRO A 345 GLN A 361 1 17 HELIX 16 16 PRO B 5 LYS B 24 1 20 HELIX 17 17 VAL B 65 ARG B 80 1 16 HELIX 18 18 PRO B 88 TRP B 93 1 6 HELIX 19 19 ALA B 98 ASN B 102 5 5 HELIX 20 20 THR B 105 THR B 111 1 7 HELIX 21 21 SER B 127 TRP B 138 1 12 HELIX 22 22 ALA B 151 VAL B 163 1 13 HELIX 23 23 SER B 169 VAL B 178 1 10 HELIX 24 24 PRO B 192 TYR B 199 5 8 HELIX 25 25 LEU B 216 GLY B 222 1 7 HELIX 26 26 THR B 226 LYS B 239 1 14 HELIX 27 27 PRO B 240 ILE B 243 5 4 HELIX 28 28 GLU B 245 GLN B 256 1 12 HELIX 29 29 ASN B 279 SER B 287 1 9 HELIX 30 30 ASP B 288 LEU B 293 1 6 HELIX 31 31 PRO B 330 LYS B 332 5 3 HELIX 32 32 PRO B 345 GLN B 361 1 17 SHEET 1 A10 GLN A 52 PRO A 53 0 SHEET 2 A10 LYS A 37 ASP A 47 -1 N ALA A 46 O GLN A 52 SHEET 3 A10 GLY A 27 TYR A 34 -1 N TYR A 34 O LYS A 37 SHEET 4 A10 LEU A 334 ALA A 340 -1 O LEU A 339 N ALA A 29 SHEET 5 A10 PHE A 322 ILE A 329 -1 N TYR A 325 O MET A 338 SHEET 6 A10 SER A 311 THR A 319 -1 N GLY A 317 O SER A 324 SHEET 7 A10 GLU A 272 ASP A 275 -1 N LEU A 274 O TRP A 312 SHEET 8 A10 MET A 265 GLN A 267 -1 N TYR A 266 O MET A 273 SHEET 9 A10 ARG A 258 THR A 262 -1 N THR A 262 O MET A 265 SHEET 10 A10 LYS A 299 THR A 305 -1 O THR A 305 N ARG A 258 SHEET 1 B 2 PHE A 60 GLU A 61 0 SHEET 2 B 2 LYS A 224 SER A 225 -1 O SER A 225 N PHE A 60 SHEET 1 C 2 GLN A 147 ARG A 148 0 SHEET 2 C 2 ARG A 296 PRO A 297 -1 O ARG A 296 N ARG A 148 SHEET 1 D 2 GLY A 202 ARG A 204 0 SHEET 2 D 2 LYS A 207 VAL A 209 -1 O VAL A 209 N GLY A 202 SHEET 1 E10 GLN B 52 PRO B 53 0 SHEET 2 E10 LYS B 37 ASP B 47 -1 N ALA B 46 O GLN B 52 SHEET 3 E10 GLY B 27 TYR B 34 -1 N VAL B 30 O PHE B 41 SHEET 4 E10 LEU B 334 ALA B 340 -1 O LEU B 339 N ALA B 29 SHEET 5 E10 GLY B 323 ILE B 329 -1 N ILE B 329 O LEU B 334 SHEET 6 E10 SER B 311 ALA B 318 -1 N GLY B 317 O SER B 324 SHEET 7 E10 GLU B 272 ASP B 275 -1 N LEU B 274 O TRP B 312 SHEET 8 E10 MET B 265 GLN B 267 -1 N TYR B 266 O MET B 273 SHEET 9 E10 ARG B 258 THR B 262 -1 N THR B 262 O MET B 265 SHEET 10 E10 LYS B 299 THR B 305 -1 O THR B 305 N ARG B 258 SHEET 1 F 2 PHE B 60 GLU B 61 0 SHEET 2 F 2 LYS B 224 SER B 225 -1 O SER B 225 N PHE B 60 SHEET 1 G 2 GLN B 147 ARG B 148 0 SHEET 2 G 2 ARG B 296 PRO B 297 -1 O ARG B 296 N ARG B 148 SHEET 1 H 2 GLY B 202 ARG B 204 0 SHEET 2 H 2 LYS B 207 VAL B 209 -1 O VAL B 209 N GLY B 202 CISPEP 1 TRP A 276 PRO A 277 0 8.79 CISPEP 2 THR A 302 PRO A 303 0 -4.72 CISPEP 3 TRP B 276 PRO B 277 0 2.93 CISPEP 4 THR B 302 PRO B 303 0 -1.25 SITE 1 AC1 11 HIS A 186 HOH A 616 HOH A 691 HOH A 692 SITE 2 AC1 11 HOH A 744 HOH A 752 HOH A 821 HOH A 890 SITE 3 AC1 11 HOH A 899 LYS B 290 HOH B 610 SITE 1 AC2 5 PHE A 41 THR A 42 HOH A 579 GLY B 116 SITE 2 AC2 5 LEU B 149 SITE 1 AC3 3 ARG A 232 1U7 A 404 HOH A 723 SITE 1 AC4 7 GLY A 36 PRO A 38 ALA A 231 ARG A 232 SITE 2 AC4 7 GLN A 235 PO4 A 403 HOH A 715 CRYST1 118.580 76.420 97.500 90.00 115.70 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008433 0.000000 0.004058 0.00000 SCALE2 0.000000 0.013086 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011382 0.00000