HEADER UNKNOWN FUNCTION 30-MAY-13 4KZS TITLE CRYSTAL STRUCTURE OF THE SECRETED PROTEIN HP1454 FROM THE HUMAN TITLE 2 PATHOGEN HELICOBACTER PYLORI COMPND MOL_ID: 1; COMPND 2 MOLECULE: LPP20 LIPOFAMILY PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES; COMPND 5 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HELICOBACTER PYLORI R046WA; SOURCE 3 ORGANISM_TAXID: 1145116; SOURCE 4 STRAIN: CCUG 17874; SOURCE 5 GENE: HP1454, OUO_1490; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: HP1454-PET151 KEYWDS HELICOBACTER PYLORI, SECRETED PROTEINS, OUTER MEMBRANE, TOL-PAL KEYWDS 2 SYSTEM, THREE-HELIX BUNDLE, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR S.QUARANTINI,L.CENDRON,W.FISCHER,G.ZANOTTI REVDAT 4 28-FEB-24 4KZS 1 REMARK REVDAT 3 15-NOV-17 4KZS 1 REMARK REVDAT 2 22-OCT-14 4KZS 1 JRNL REVDAT 1 04-JUN-14 4KZS 0 JRNL AUTH S.QUARANTINI,L.CENDRON,G.ZANOTTI JRNL TITL CRYSTAL STRUCTURE OF THE SECRETED PROTEIN HP1454 FROM THE JRNL TITL 2 HUMAN PATHOGEN HELICOBACTER PYLORI. JRNL REF PROTEINS V. 82 2868 2014 JRNL REFN ISSN 0887-3585 JRNL PMID 24854568 JRNL DOI 10.1002/PROT.24608 REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.44 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 12075 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.250 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.304 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.900 REMARK 3 FREE R VALUE TEST SET COUNT : 623 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 888 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3370 REMARK 3 BIN FREE R VALUE SET COUNT : 45 REMARK 3 BIN FREE R VALUE : 0.4490 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 1912 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 14 REMARK 3 SOLVENT ATOMS : 35 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 85.21 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 4.12000 REMARK 3 B22 (A**2) : -6.96000 REMARK 3 B33 (A**2) : 2.85000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.464 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.338 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.272 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 13.200 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.925 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.859 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 1949 ; 0.014 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 2623 ; 1.982 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 240 ; 5.804 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 87 ;45.050 ;25.287 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 368 ;18.189 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 10 ;15.548 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 303 ; 0.125 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1421 ; 0.008 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4KZS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 31-MAY-13. REMARK 100 THE DEPOSITION ID IS D_1000080000. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : BM14 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97887, 0.97826 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12784 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 60.540 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 9.100 REMARK 200 R MERGE (I) : 0.09200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.85 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.50 REMARK 200 R MERGE FOR SHELL (I) : 0.60900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: MAD REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MAD REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M SODIUM ACETATE, AND 2.0 M REMARK 280 AMMONIUM SULFATE, PH 4.6, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 60.54000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 60.54000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 36.82000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 50.67500 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 36.82000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 50.67500 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 60.54000 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 36.82000 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 50.67500 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 60.54000 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 36.82000 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 50.67500 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 506 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 523 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 19 REMARK 465 GLU A 20 REMARK 465 PRO A 21 REMARK 465 LYS A 22 REMARK 465 TRP A 23 REMARK 465 TYR A 24 REMARK 465 SER A 25 REMARK 465 LYS A 26 REMARK 465 ALA A 27 REMARK 465 TYR A 28 REMARK 465 ASN A 29 REMARK 465 LYS A 30 REMARK 465 THR A 31 REMARK 465 ASN A 32 REMARK 465 THR A 33 REMARK 465 VAL A 77 REMARK 465 ASP A 78 REMARK 465 ASN A 79 REMARK 465 LYS A 80 REMARK 465 LEU A 81 REMARK 465 LYS A 82 REMARK 465 SER A 83 REMARK 465 SER A 84 REMARK 465 ASP A 85 REMARK 465 SER A 86 REMARK 465 GLN A 87 REMARK 465 THR A 88 REMARK 465 GLU A 288 REMARK 465 LEU A 289 REMARK 465 LYS A 290 REMARK 465 ASP A 291 REMARK 465 TYR A 292 REMARK 465 ALA A 293 REMARK 465 ASN A 294 REMARK 465 LYS A 295 REMARK 465 GLU A 296 REMARK 465 GLY A 297 REMARK 465 GLN A 298 REMARK 465 GLY A 299 REMARK 465 ASN A 300 REMARK 465 THR A 301 REMARK 465 GLY A 302 REMARK 465 LEU A 303 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH A 501 O HOH A 535 1.89 REMARK 500 CA VAL A 101 O HOH A 510 1.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O GLY A 259 O GLY A 259 4565 1.99 REMARK 500 C12 1PE A 401 C12 1PE A 401 3555 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASN A 99 N - CA - C ANGL. DEV. = 22.5 DEGREES REMARK 500 ALA A 208 CB - CA - C ANGL. DEV. = -12.6 DEGREES REMARK 500 ALA A 208 N - CA - C ANGL. DEV. = 20.4 DEGREES REMARK 500 PHE A 238 CB - CA - C ANGL. DEV. = 14.6 DEGREES REMARK 500 THR A 246 N - CA - C ANGL. DEV. = -17.1 DEGREES REMARK 500 ASP A 256 CB - CA - C ANGL. DEV. = -19.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 35 82.30 -67.73 REMARK 500 ILE A 72 34.93 -86.68 REMARK 500 GLN A 73 -42.72 -141.21 REMARK 500 LEU A 96 -37.91 -34.85 REMARK 500 ASN A 99 -87.16 -120.62 REMARK 500 MET A 143 -174.20 -61.12 REMARK 500 PRO A 144 -70.58 -32.15 REMARK 500 LYS A 145 -133.21 78.15 REMARK 500 CYS A 147 -163.31 -124.10 REMARK 500 PHE A 151 112.40 -160.23 REMARK 500 LEU A 152 -117.40 48.48 REMARK 500 SER A 176 36.82 75.65 REMARK 500 PRO A 178 -125.39 -74.39 REMARK 500 VAL A 179 -12.36 74.52 REMARK 500 ASN A 192 -27.85 -142.56 REMARK 500 LYS A 195 -91.89 107.69 REMARK 500 PRO A 196 -141.08 -117.29 REMARK 500 ASN A 205 -78.73 -116.96 REMARK 500 SER A 206 -159.00 37.92 REMARK 500 VAL A 221 -21.30 -145.89 REMARK 500 LYS A 229 42.87 70.40 REMARK 500 PHE A 238 -65.79 -97.99 REMARK 500 THR A 239 -17.90 -143.77 REMARK 500 ARG A 249 -26.79 86.43 REMARK 500 VAL A 252 108.01 -52.44 REMARK 500 THR A 260 81.55 -155.32 REMARK 500 PRO A 261 92.55 -66.07 REMARK 500 LEU A 263 101.17 -21.56 REMARK 500 ARG A 265 -152.78 67.71 REMARK 500 SER A 266 -19.14 -43.08 REMARK 500 GLU A 268 28.55 -77.56 REMARK 500 PHE A 276 -71.63 -51.32 REMARK 500 LEU A 281 24.48 -65.92 REMARK 500 SER A 283 18.99 -69.70 REMARK 500 LEU A 284 93.05 86.07 REMARK 500 LEU A 285 44.01 -170.16 REMARK 500 TYR A 286 32.26 88.96 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 1PE A 401 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1PE A 401 DBREF 4KZS A 19 303 UNP K2KM35 K2KM35_HELPX 18 302 SEQRES 1 A 285 ALA GLU PRO LYS TRP TYR SER LYS ALA TYR ASN LYS THR SEQRES 2 A 285 ASN THR GLN LYS GLY TYR LEU TYR GLY SER GLY SER ALA SEQRES 3 A 285 THR SER LYS GLU ALA SER LYS GLN LYS ALA LEU ALA ASP SEQRES 4 A 285 LEU VAL ALA SER ILE SER VAL VAL VAL ASN SER GLN ILE SEQRES 5 A 285 HIS ILE GLN LYS SER ARG VAL ASP ASN LYS LEU LYS SER SEQRES 6 A 285 SER ASP SER GLN THR ILE ASN LEU LYS THR ASP ASP LEU SEQRES 7 A 285 GLU LEU ASN ASN VAL GLU ILE VAL ASN GLN GLU VAL GLN SEQRES 8 A 285 LYS GLY ILE TYR TYR THR ARG VAL ARG ILE ASN GLN ASN SEQRES 9 A 285 LEU PHE LEU GLN GLY LEU ARG ASP LYS TYR ASN ALA LEU SEQRES 10 A 285 TYR GLY GLN PHE SER THR LEU MET PRO LYS VAL CYS LYS SEQRES 11 A 285 GLY VAL PHE LEU GLN GLN SER LYS SER MET GLY ASP LEU SEQRES 12 A 285 LEU ALA LYS ALA MET PRO ILE GLU ARG ILE LEU LYS ALA SEQRES 13 A 285 TYR SER VAL PRO VAL GLY SER LEU GLU ASN TYR GLU LYS SEQRES 14 A 285 ILE TYR TYR GLN ASN ALA PHE LYS PRO LYS VAL GLN ILE SEQRES 15 A 285 THR PHE ASP ASN ASN SER ASP ALA GLU ILE LYS ALA ALA SEQRES 16 A 285 LEU ILE SER ALA TYR ALA ARG VAL LEU THR PRO SER ASP SEQRES 17 A 285 GLU GLU LYS LEU TYR GLN ILE LYS ASN GLU VAL PHE THR SEQRES 18 A 285 ASP SER ALA ASN GLY ILE THR ARG ILE ARG VAL VAL VAL SEQRES 19 A 285 SER ALA SER ASP CYS GLN GLY THR PRO VAL LEU ASN ARG SEQRES 20 A 285 SER LEU GLU VAL ASP GLU LYS ASN LYS ASN PHE ALA ILE SEQRES 21 A 285 THR ARG LEU GLN SER LEU LEU TYR LYS GLU LEU LYS ASP SEQRES 22 A 285 TYR ALA ASN LYS GLU GLY GLN GLY ASN THR GLY LEU HET 1PE A 401 14 HETNAM 1PE PENTAETHYLENE GLYCOL HETSYN 1PE PEG400 FORMUL 2 1PE C10 H22 O6 FORMUL 3 HOH *35(H2 O) HELIX 1 1 SER A 46 ILE A 72 1 27 HELIX 2 2 ASP A 94 LEU A 98 5 5 HELIX 3 3 GLN A 121 SER A 140 1 20 HELIX 4 4 THR A 141 MET A 143 5 3 HELIX 5 5 LEU A 152 TYR A 175 1 24 HELIX 6 6 LEU A 182 GLN A 191 1 10 HELIX 7 7 ASP A 207 ALA A 219 1 13 HELIX 8 8 ASN A 264 GLU A 268 5 5 HELIX 9 9 VAL A 269 LEU A 281 1 13 SHEET 1 A 3 TYR A 37 ALA A 44 0 SHEET 2 A 3 ILE A 112 ASN A 120 -1 O TYR A 113 N ALA A 44 SHEET 3 A 3 GLU A 102 GLN A 109 -1 N VAL A 104 O ARG A 116 SHEET 1 B 3 THR A 223 SER A 225 0 SHEET 2 B 3 LYS A 197 ILE A 200 1 N VAL A 198 O SER A 225 SHEET 3 B 3 GLN A 232 ILE A 233 1 O ILE A 233 N GLN A 199 CISPEP 1 LYS A 195 PRO A 196 0 -4.64 SITE 1 AC1 1 VAL A 101 CRYST1 73.640 101.350 121.080 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013580 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009867 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008259 0.00000