HEADER CARBOHYDRATE-BINDING PROTEIN 30-MAY-13 4KZV TITLE STRUCTURE OF THE CARBOHYDRATE-RECOGNITION DOMAIN OF THE C-TYPE LECTIN TITLE 2 MINCLE BOUND TO TREHALOSE COMPND MOL_ID: 1; COMPND 2 MOLECULE: C-TYPE LECTIN MINCLE; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: CARBOHYDRATE RECOGNITION DOMAIN (UNP RESIDUES 79-208); COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BOS TAURUS; SOURCE 3 ORGANISM_COMMON: BOVINE,COW,DOMESTIC CATTLE,DOMESTIC COW; SOURCE 4 ORGANISM_TAXID: 9913; SOURCE 5 GENE: CLEC4E; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PT5T KEYWDS C-TYPE LECTIN, CARBOHYDRATE-RECOGNITION DOMAIN, CARBOHYDRATE-BINDING KEYWDS 2 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR H.FEINBERG,S.A.F.JEGOUZO,T.J.W.ROWNTREE,Y.GUAN,M.A.BRASH,M.E.TAYLOR, AUTHOR 2 W.I.WEIS,K.DRICKAMER REVDAT 6 06-NOV-24 4KZV 1 HETSYN REVDAT 5 29-JUL-20 4KZV 1 COMPND REMARK SEQADV HET REVDAT 5 2 1 HETNAM HETSYN FORMUL LINK REVDAT 5 3 1 SITE ATOM REVDAT 4 15-NOV-17 4KZV 1 REMARK REVDAT 3 23-OCT-13 4KZV 1 JRNL REVDAT 2 04-SEP-13 4KZV 1 JRNL REVDAT 1 28-AUG-13 4KZV 0 JRNL AUTH H.FEINBERG,S.A.JEGOUZO,T.J.ROWNTREE,Y.GUAN,M.A.BRASH, JRNL AUTH 2 M.E.TAYLOR,W.I.WEIS,K.DRICKAMER JRNL TITL MECHANISM FOR RECOGNITION OF AN UNUSUAL MYCOBACTERIAL JRNL TITL 2 GLYCOLIPID BY THE MACROPHAGE RECEPTOR MINCLE. JRNL REF J.BIOL.CHEM. V. 288 28457 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23960080 JRNL DOI 10.1074/JBC.M113.497149 REMARK 2 REMARK 2 RESOLUTION. 1.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 36.74 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 53969 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : NULL REMARK 3 R VALUE (WORKING SET) : 0.170 REMARK 3 FREE R VALUE : 0.207 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 2694 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 36.7519 - 3.7368 1.00 2936 153 0.1589 0.1609 REMARK 3 2 3.7368 - 2.9664 1.00 2796 148 0.1661 0.2116 REMARK 3 3 2.9664 - 2.5916 1.00 2752 144 0.1833 0.2278 REMARK 3 4 2.5916 - 2.3547 1.00 2715 143 0.1773 0.2125 REMARK 3 5 2.3547 - 2.1859 1.00 2715 142 0.1664 0.2042 REMARK 3 6 2.1859 - 2.0571 1.00 2695 143 0.1695 0.2040 REMARK 3 7 2.0571 - 1.9540 1.00 2705 142 0.1648 0.2410 REMARK 3 8 1.9540 - 1.8690 1.00 2684 141 0.1708 0.2025 REMARK 3 9 1.8690 - 1.7970 1.00 2682 141 0.1725 0.2316 REMARK 3 10 1.7970 - 1.7350 1.00 2687 141 0.1761 0.2252 REMARK 3 11 1.7350 - 1.6808 1.00 2682 142 0.1663 0.2101 REMARK 3 12 1.6808 - 1.6327 1.00 2667 140 0.1685 0.2251 REMARK 3 13 1.6327 - 1.5898 1.00 2671 141 0.1737 0.2356 REMARK 3 14 1.5898 - 1.5510 1.00 2655 140 0.1793 0.2262 REMARK 3 15 1.5510 - 1.5157 1.00 2687 141 0.1817 0.2347 REMARK 3 16 1.5157 - 1.4834 1.00 2642 139 0.1871 0.2484 REMARK 3 17 1.4834 - 1.4538 1.00 2651 140 0.1878 0.2369 REMARK 3 18 1.4538 - 1.4263 1.00 2672 141 0.1841 0.2545 REMARK 3 19 1.4263 - 1.4000 0.97 2581 132 0.1868 0.2452 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 1.00 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.610 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.010 2267 REMARK 3 ANGLE : 0.981 3044 REMARK 3 CHIRALITY : 0.067 313 REMARK 3 PLANARITY : 0.004 390 REMARK 3 DIHEDRAL : 11.089 815 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 12 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN B AND (RESID 78:83 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.0202 -10.4281 15.6237 REMARK 3 T TENSOR REMARK 3 T11: 0.6207 T22: 0.1721 REMARK 3 T33: 0.3453 T12: 0.1612 REMARK 3 T13: 0.1113 T23: 0.1392 REMARK 3 L TENSOR REMARK 3 L11: 0.0847 L22: 0.0010 REMARK 3 L33: 0.0154 L12: -0.0085 REMARK 3 L13: 0.0367 L23: -0.0032 REMARK 3 S TENSOR REMARK 3 S11: 0.0757 S12: -0.0005 S13: -0.0313 REMARK 3 S21: -0.0256 S22: 0.0165 S23: 0.0313 REMARK 3 S31: 0.0036 S32: 0.0019 S33: 0.0251 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND (RESID 84:99 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.4884 -4.3903 13.6706 REMARK 3 T TENSOR REMARK 3 T11: 0.5084 T22: 0.0960 REMARK 3 T33: 0.2573 T12: 0.0568 REMARK 3 T13: 0.1685 T23: 0.1215 REMARK 3 L TENSOR REMARK 3 L11: 0.0297 L22: 0.0192 REMARK 3 L33: 0.0164 L12: -0.0197 REMARK 3 L13: -0.0185 L23: 0.0237 REMARK 3 S TENSOR REMARK 3 S11: 0.1026 S12: 0.0803 S13: -0.0046 REMARK 3 S21: -0.2969 S22: -0.1245 S23: -0.0120 REMARK 3 S31: 0.3942 S32: 0.0495 S33: -0.0664 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN B AND (RESID 100:110 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.9845 -0.5170 24.2765 REMARK 3 T TENSOR REMARK 3 T11: 0.2334 T22: 0.1754 REMARK 3 T33: 0.2325 T12: -0.0260 REMARK 3 T13: 0.0471 T23: 0.0542 REMARK 3 L TENSOR REMARK 3 L11: 0.0005 L22: 0.0870 REMARK 3 L33: 0.0847 L12: 0.0058 REMARK 3 L13: -0.0041 L23: 0.0156 REMARK 3 S TENSOR REMARK 3 S11: -0.0923 S12: -0.0027 S13: -0.0485 REMARK 3 S21: -0.0391 S22: -0.0453 S23: 0.0466 REMARK 3 S31: 0.1646 S32: 0.0023 S33: -0.1473 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN B AND (RESID 111:119 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.2114 4.7194 15.2856 REMARK 3 T TENSOR REMARK 3 T11: 0.2501 T22: 0.1371 REMARK 3 T33: 0.1676 T12: 0.0275 REMARK 3 T13: 0.1422 T23: 0.1213 REMARK 3 L TENSOR REMARK 3 L11: 0.0268 L22: 0.0353 REMARK 3 L33: 0.0336 L12: -0.0262 REMARK 3 L13: -0.0199 L23: 0.0322 REMARK 3 S TENSOR REMARK 3 S11: 0.0077 S12: -0.0274 S13: -0.0253 REMARK 3 S21: -0.0493 S22: -0.0757 S23: -0.0720 REMARK 3 S31: 0.0193 S32: 0.0562 S33: -0.0050 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN B AND (RESID 120:129 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6098 1.9983 3.3662 REMARK 3 T TENSOR REMARK 3 T11: 0.7050 T22: 0.0799 REMARK 3 T33: 0.0260 T12: 0.1625 REMARK 3 T13: 0.1457 T23: 0.1747 REMARK 3 L TENSOR REMARK 3 L11: 0.0419 L22: 0.0716 REMARK 3 L33: 0.0568 L12: -0.0527 REMARK 3 L13: 0.0468 L23: -0.0490 REMARK 3 S TENSOR REMARK 3 S11: -0.0040 S12: 0.0374 S13: 0.0331 REMARK 3 S21: -0.0141 S22: -0.0498 S23: -0.0417 REMARK 3 S31: 0.0226 S32: 0.0472 S33: -0.0485 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 130:139 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.9561 -3.4063 9.1458 REMARK 3 T TENSOR REMARK 3 T11: 0.3301 T22: 0.0717 REMARK 3 T33: 0.1187 T12: -0.1416 REMARK 3 T13: -0.0708 T23: -0.0338 REMARK 3 L TENSOR REMARK 3 L11: 0.0148 L22: 0.0540 REMARK 3 L33: 0.0033 L12: -0.0219 REMARK 3 L13: -0.0064 L23: 0.0232 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: 0.0115 S13: 0.0174 REMARK 3 S21: -0.0673 S22: -0.0067 S23: 0.0413 REMARK 3 S31: 0.0820 S32: -0.0320 S33: -0.0071 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 140:149 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.5619 14.9155 17.5143 REMARK 3 T TENSOR REMARK 3 T11: 0.2540 T22: 0.3026 REMARK 3 T33: 0.2934 T12: 0.1789 REMARK 3 T13: -0.0213 T23: 0.0280 REMARK 3 L TENSOR REMARK 3 L11: 0.0051 L22: 0.0693 REMARK 3 L33: 0.0072 L12: -0.0194 REMARK 3 L13: -0.0084 L23: 0.0208 REMARK 3 S TENSOR REMARK 3 S11: -0.0416 S12: -0.0497 S13: 0.0801 REMARK 3 S21: 0.0135 S22: -0.0025 S23: 0.0711 REMARK 3 S31: -0.0696 S32: -0.0704 S33: -0.0188 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 150:161 ) REMARK 3 ORIGIN FOR THE GROUP (A): -6.7431 13.9042 13.9589 REMARK 3 T TENSOR REMARK 3 T11: 0.1995 T22: 0.1618 REMARK 3 T33: 0.1580 T12: 0.0147 REMARK 3 T13: 0.0131 T23: 0.0493 REMARK 3 L TENSOR REMARK 3 L11: 0.0409 L22: 0.0225 REMARK 3 L33: 0.0022 L12: -0.0255 REMARK 3 L13: -0.0083 L23: 0.0012 REMARK 3 S TENSOR REMARK 3 S11: -0.0373 S12: -0.0035 S13: 0.0135 REMARK 3 S21: -0.0884 S22: -0.0732 S23: 0.0615 REMARK 3 S31: -0.0484 S32: 0.0515 S33: -0.0688 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 162:177 ) REMARK 3 ORIGIN FOR THE GROUP (A): -18.3956 10.4268 6.8005 REMARK 3 T TENSOR REMARK 3 T11: 0.3209 T22: 0.2559 REMARK 3 T33: 0.2814 T12: 0.0081 REMARK 3 T13: -0.0756 T23: 0.0685 REMARK 3 L TENSOR REMARK 3 L11: 0.0040 L22: 0.0048 REMARK 3 L33: -0.0017 L12: -0.0017 REMARK 3 L13: -0.0036 L23: -0.0005 REMARK 3 S TENSOR REMARK 3 S11: 0.0554 S12: -0.0310 S13: 0.0027 REMARK 3 S21: -0.1395 S22: 0.1323 S23: 0.1425 REMARK 3 S31: 0.0605 S32: -0.1503 S33: -0.0001 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 178:190 ) REMARK 3 ORIGIN FOR THE GROUP (A): -14.1316 4.1204 3.2632 REMARK 3 T TENSOR REMARK 3 T11: 0.5626 T22: 0.1606 REMARK 3 T33: 0.1534 T12: -0.2472 REMARK 3 T13: -0.2484 T23: -0.1208 REMARK 3 L TENSOR REMARK 3 L11: 0.0152 L22: 0.0009 REMARK 3 L33: 0.0580 L12: 0.0011 REMARK 3 L13: -0.0029 L23: -0.0108 REMARK 3 S TENSOR REMARK 3 S11: 0.0312 S12: -0.0622 S13: -0.0061 REMARK 3 S21: -0.1823 S22: -0.0196 S23: 0.0410 REMARK 3 S31: 0.0428 S32: -0.0510 S33: 0.0014 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN B AND (RESID 191:202 ) REMARK 3 ORIGIN FOR THE GROUP (A): -19.4432 1.7750 14.6903 REMARK 3 T TENSOR REMARK 3 T11: 0.3098 T22: 0.3107 REMARK 3 T33: 0.3262 T12: -0.1243 REMARK 3 T13: -0.0932 T23: 0.0587 REMARK 3 L TENSOR REMARK 3 L11: 0.0081 L22: 0.0082 REMARK 3 L33: 0.0621 L12: -0.0112 REMARK 3 L13: -0.0209 L23: 0.0255 REMARK 3 S TENSOR REMARK 3 S11: -0.0578 S12: -0.0415 S13: 0.1150 REMARK 3 S21: -0.0828 S22: -0.0013 S23: 0.2546 REMARK 3 S31: -0.0085 S32: -0.2744 S33: 0.0029 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN B AND (RESID 203:209 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3170 -2.1434 18.0057 REMARK 3 T TENSOR REMARK 3 T11: 0.3647 T22: -0.0490 REMARK 3 T33: 0.1435 T12: 0.0639 REMARK 3 T13: 0.2441 T23: 0.2828 REMARK 3 L TENSOR REMARK 3 L11: 0.1089 L22: 0.0275 REMARK 3 L33: 0.0583 L12: 0.0229 REMARK 3 L13: 0.0376 L23: 0.0254 REMARK 3 S TENSOR REMARK 3 S11: 0.0019 S12: -0.0199 S13: -0.0229 REMARK 3 S21: -0.0272 S22: -0.0206 S23: -0.0806 REMARK 3 S31: 0.0829 S32: 0.0788 S33: 0.0618 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4KZV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 21-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080003. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL12-2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9795 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 3.3.20 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 54041 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.400 REMARK 200 RESOLUTION RANGE LOW (A) : 36.740 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 200 DATA REDUNDANCY : 9.600 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.03400 REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : 29.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.48 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.0 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.34200 REMARK 200 R SYM FOR SHELL (I) : 0.34200 REMARK 200 <I/SIGMA(I)> FOR SHELL : 2.300 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 42.24 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.13 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN: 2.5 MG/ML MINCLE, 2.5 MM REMARK 280 CACL2, 10 MM TRIS-CL, PH 8.0, 25 MM NACL, 50 MM TREHALOSE. REMARK 280 RESERVOIR: 25% POLYETHYLENE GLYCOL 4,000, 17.5% 2-PROPANOL AND REMARK 280 0.1 M SODIUM CITRATE, PH 5.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.67000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 36.74000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 36.74000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 24.83500 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 36.74000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 36.74000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 74.50500 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 36.74000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 36.74000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 24.83500 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 36.74000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 36.74000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 74.50500 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 49.67000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 507 LIES ON A SPECIAL POSITION. REMARK 375 HOH B 520 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ARG A 209 REMARK 465 LYS A 210 REMARK 465 ILE A 211 REMARK 465 LEU B 172 REMARK 465 VAL B 173 REMARK 465 THR B 174 REMARK 465 VAL B 175 REMARK 465 GLU B 176 REMARK 465 LYS B 210 REMARK 465 ILE B 211 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 568 O HOH B 570 8555 2.06 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LYS A 82 -7.55 83.40 REMARK 500 GLN A 87 -116.99 55.01 REMARK 500 VAL A 173 -51.27 67.60 REMARK 500 LYS B 82 -8.80 78.57 REMARK 500 GLN B 87 -119.96 60.82 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 303 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL A 116 O REMARK 620 2 ASN A 118 OD1 77.1 REMARK 620 3 GLU A 122 OE2 83.2 125.5 REMARK 620 4 GLU A 122 OE1 75.5 76.3 49.6 REMARK 620 5 GLU A 205 OE2 129.5 148.8 78.9 121.8 REMARK 620 6 GLU A 205 OE1 80.5 139.2 84.5 129.7 51.2 REMARK 620 7 HOH A 405 O 147.1 80.2 91.0 76.2 80.3 131.3 REMARK 620 8 HOH A 415 O 105.8 77.7 156.7 153.0 78.9 76.1 92.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 168 OE1 REMARK 620 2 ASN A 170 OD1 72.2 REMARK 620 3 GLU A 176 OE1 140.5 75.3 REMARK 620 4 ASN A 192 OD1 68.4 138.2 146.5 REMARK 620 5 ASP A 193 OD1 72.4 86.4 83.9 94.5 REMARK 620 6 ASP A 193 O 128.8 144.1 71.9 75.2 76.0 REMARK 620 7 GLC C 2 O3 76.5 77.7 117.6 80.1 148.1 131.1 REMARK 620 8 GLC C 2 O4 136.7 117.8 79.0 83.8 144.9 69.7 66.2 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 304 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 171 OD1 REMARK 620 2 GLU A 176 O 95.8 REMARK 620 3 ASP A 193 OD2 96.9 89.2 REMARK 620 4 HOH A 411 O 101.9 161.3 94.4 REMARK 620 5 HOH A 418 O 90.2 86.5 172.0 87.6 REMARK 620 N 1 2 3 4 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 401 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 VAL B 116 O REMARK 620 2 ASN B 118 OD1 77.1 REMARK 620 3 GLU B 122 OE2 85.8 130.0 REMARK 620 4 GLU B 122 OE1 78.0 79.3 51.1 REMARK 620 5 GLU B 205 OE2 130.3 145.9 78.1 121.7 REMARK 620 6 GLU B 205 OE1 80.7 136.1 84.8 131.7 51.5 REMARK 620 7 HOH B 513 O 147.1 81.9 88.6 73.4 79.7 131.1 REMARK 620 8 HOH B 514 O 104.6 74.8 155.1 152.5 78.0 75.0 93.9 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 400 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU B 168 OE1 REMARK 620 2 ASN B 170 OD1 70.7 REMARK 620 3 ASN B 171 OD1 128.3 67.5 REMARK 620 4 ASN B 192 OD1 74.8 144.5 145.7 REMARK 620 5 ASP B 193 OD1 75.8 83.7 70.9 96.0 REMARK 620 6 ASP B 193 O 134.7 127.5 62.0 83.7 67.3 REMARK 620 N 1 2 3 4 5 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KZW RELATED DB: PDB REMARK 999 REMARK 999 SEQUENCE REMARK 999 AUTHORS STATE THAT THE SEQUENCE MATCHES NCBI SEQUENCE XM_592701.4, REMARK 999 AND THE CONFLICT AT RESIDUE 174 IS A KNOWN POLYMORPHISM. DBREF 4KZV A 79 208 UNP E1BHM0 E1BHM0_BOVIN 79 208 DBREF 4KZV B 79 208 UNP E1BHM0 E1BHM0_BOVIN 79 208 SEQADV 4KZV ALA A 78 UNP E1BHM0 EXPRESSION TAG SEQADV 4KZV THR A 174 UNP E1BHM0 ILE 174 SEE REMARK 999 SEQADV 4KZV ARG A 209 UNP E1BHM0 SEE REMARK 999 SEQADV 4KZV LYS A 210 UNP E1BHM0 SEE REMARK 999 SEQADV 4KZV ILE A 211 UNP E1BHM0 SEE REMARK 999 SEQADV 4KZV ALA B 78 UNP E1BHM0 EXPRESSION TAG SEQADV 4KZV THR B 174 UNP E1BHM0 ILE 174 SEE REMARK 999 SEQADV 4KZV ARG B 209 UNP E1BHM0 SEE REMARK 999 SEQADV 4KZV LYS B 210 UNP E1BHM0 SEE REMARK 999 SEQADV 4KZV ILE B 211 UNP E1BHM0 SEE REMARK 999 SEQRES 1 A 134 ALA CYS PRO LEU LYS TRP PHE HIS PHE GLN SER SER CYS SEQRES 2 A 134 TYR LEU PHE SER PRO ASP THR MET SER TRP ARG ALA SER SEQRES 3 A 134 LEU LYS ASN CYS SER SER MET GLY ALA HIS LEU VAL VAL SEQRES 4 A 134 ILE ASN THR GLN GLU GLU GLN GLU PHE LEU TYR TYR THR SEQRES 5 A 134 LYS PRO ARG LYS LYS GLU PHE TYR ILE GLY LEU THR ASP SEQRES 6 A 134 GLN VAL THR GLU GLY GLN TRP GLN TRP VAL ASP GLY THR SEQRES 7 A 134 PRO PHE THR LYS SER LEU SER PHE TRP ASP ALA GLY GLU SEQRES 8 A 134 PRO ASN ASN LEU VAL THR VAL GLU ASP CYS ALA THR ILE SEQRES 9 A 134 ARG ASP SER SER ASN PRO ARG GLN ASN TRP ASN ASP VAL SEQRES 10 A 134 PRO CYS PHE PHE ASN MET PHE ARG VAL CYS GLU MET PRO SEQRES 11 A 134 GLU ARG LYS ILE SEQRES 1 B 134 ALA CYS PRO LEU LYS TRP PHE HIS PHE GLN SER SER CYS SEQRES 2 B 134 TYR LEU PHE SER PRO ASP THR MET SER TRP ARG ALA SER SEQRES 3 B 134 LEU LYS ASN CYS SER SER MET GLY ALA HIS LEU VAL VAL SEQRES 4 B 134 ILE ASN THR GLN GLU GLU GLN GLU PHE LEU TYR TYR THR SEQRES 5 B 134 LYS PRO ARG LYS LYS GLU PHE TYR ILE GLY LEU THR ASP SEQRES 6 B 134 GLN VAL THR GLU GLY GLN TRP GLN TRP VAL ASP GLY THR SEQRES 7 B 134 PRO PHE THR LYS SER LEU SER PHE TRP ASP ALA GLY GLU SEQRES 8 B 134 PRO ASN ASN LEU VAL THR VAL GLU ASP CYS ALA THR ILE SEQRES 9 B 134 ARG ASP SER SER ASN PRO ARG GLN ASN TRP ASN ASP VAL SEQRES 10 B 134 PRO CYS PHE PHE ASN MET PHE ARG VAL CYS GLU MET PRO SEQRES 11 B 134 GLU ARG LYS ILE HET GLC C 1 11 HET GLC C 2 12 HET CA A 302 1 HET CA A 303 1 HET NA A 304 1 HET CA B 400 1 HET CA B 401 1 HETNAM GLC ALPHA-D-GLUCOPYRANOSE HETNAM CA CALCIUM ION HETNAM NA SODIUM ION HETSYN GLC ALPHA-D-GLUCOSE; D-GLUCOSE; GLUCOSE FORMUL 3 GLC 2(C6 H12 O6) FORMUL 4 CA 4(CA 2+) FORMUL 6 NA NA 1+ FORMUL 9 HOH *273(H2 O) HELIX 1 1 SER A 99 MET A 110 1 12 HELIX 2 2 THR A 119 LYS A 130 1 12 HELIX 3 3 THR A 158 SER A 162 5 5 HELIX 4 4 SER B 99 MET B 110 1 12 HELIX 5 5 THR B 119 LYS B 130 1 12 HELIX 6 6 THR B 158 SER B 162 5 5 SHEET 1 A 5 PHE A 84 PHE A 86 0 SHEET 2 A 5 SER A 89 PHE A 93 -1 O TYR A 91 N PHE A 84 SHEET 3 A 5 PHE A 201 PRO A 207 -1 O MET A 206 N CYS A 90 SHEET 4 A 5 PHE A 136 THR A 141 1 N TYR A 137 O PHE A 201 SHEET 5 A 5 GLN A 150 TRP A 151 -1 O GLN A 150 N THR A 141 SHEET 1 B 5 HIS A 113 LEU A 114 0 SHEET 2 B 5 PHE A 201 PRO A 207 -1 O GLU A 205 N HIS A 113 SHEET 3 B 5 PHE A 136 THR A 141 1 N TYR A 137 O PHE A 201 SHEET 4 B 5 CYS A 178 ILE A 181 -1 O ALA A 179 N LEU A 140 SHEET 5 B 5 TRP A 191 VAL A 194 -1 O VAL A 194 N CYS A 178 SHEET 1 C 5 PHE B 84 PHE B 86 0 SHEET 2 C 5 SER B 89 PHE B 93 -1 O TYR B 91 N PHE B 84 SHEET 3 C 5 PHE B 201 PRO B 207 -1 O MET B 206 N CYS B 90 SHEET 4 C 5 PHE B 136 THR B 145 1 N TYR B 137 O PHE B 201 SHEET 5 C 5 GLN B 148 TRP B 151 -1 O GLN B 148 N THR B 145 SHEET 1 D 5 HIS B 113 LEU B 114 0 SHEET 2 D 5 PHE B 201 PRO B 207 -1 O GLU B 205 N HIS B 113 SHEET 3 D 5 PHE B 136 THR B 145 1 N TYR B 137 O PHE B 201 SHEET 4 D 5 CYS B 178 ILE B 181 -1 O ALA B 179 N ILE B 138 SHEET 5 D 5 TRP B 191 VAL B 194 -1 O ASN B 192 N THR B 180 SSBOND 1 CYS A 79 CYS A 90 1555 1555 2.04 SSBOND 2 CYS A 107 CYS A 204 1555 1555 2.06 SSBOND 3 CYS A 178 CYS A 196 1555 1555 2.03 SSBOND 4 CYS B 79 CYS B 90 1555 1555 2.04 SSBOND 5 CYS B 107 CYS B 204 1555 1555 2.05 SSBOND 6 CYS B 178 CYS B 196 1555 1555 2.04 LINK C1 GLC C 1 O1 GLC C 2 1555 1555 1.43 LINK O VAL A 116 CA CA A 303 1555 1555 2.38 LINK OD1 ASN A 118 CA CA A 303 1555 1555 2.35 LINK OE2 GLU A 122 CA CA A 303 1555 1555 2.42 LINK OE1 GLU A 122 CA CA A 303 1555 1555 2.77 LINK OE1 GLU A 168 CA CA A 302 1555 1555 2.55 LINK OD1 ASN A 170 CA CA A 302 1555 1555 2.41 LINK OD1 ASN A 171 NA NA A 304 1555 1555 2.29 LINK OE1 GLU A 176 CA CA A 302 1555 1555 2.43 LINK O GLU A 176 NA NA A 304 1555 1555 2.31 LINK OD1 ASN A 192 CA CA A 302 1555 1555 2.45 LINK OD1 ASP A 193 CA CA A 302 1555 1555 2.34 LINK O ASP A 193 CA CA A 302 1555 1555 2.50 LINK OD2 ASP A 193 NA NA A 304 1555 1555 2.37 LINK OE2 GLU A 205 CA CA A 303 1555 1555 2.44 LINK OE1 GLU A 205 CA CA A 303 1555 1555 2.62 LINK CA CA A 302 O3 GLC C 2 1555 1555 2.51 LINK CA CA A 302 O4 GLC C 2 1555 1555 2.53 LINK CA CA A 303 O HOH A 405 1555 1555 2.38 LINK CA CA A 303 O HOH A 415 1555 1555 2.39 LINK NA NA A 304 O HOH A 411 1555 1555 2.35 LINK NA NA A 304 O HOH A 418 1555 1555 2.44 LINK O VAL B 116 CA CA B 401 1555 1555 2.28 LINK OD1 ASN B 118 CA CA B 401 1555 1555 2.36 LINK OE2 GLU B 122 CA CA B 401 1555 1555 2.43 LINK OE1 GLU B 122 CA CA B 401 1555 1555 2.61 LINK OE1 GLU B 168 CA CA B 400 1555 1555 2.50 LINK OD1 ASN B 170 CA CA B 400 1555 1555 2.47 LINK OD1 ASN B 171 CA CA B 400 1555 1555 2.78 LINK OD1 ASN B 192 CA CA B 400 1555 1555 2.32 LINK OD1 ASP B 193 CA CA B 400 1555 1555 2.46 LINK O ASP B 193 CA CA B 400 1555 1555 2.59 LINK OE2 GLU B 205 CA CA B 401 1555 1555 2.38 LINK OE1 GLU B 205 CA CA B 401 1555 1555 2.60 LINK CA CA B 401 O HOH B 513 1555 1555 2.41 LINK CA CA B 401 O HOH B 514 1555 1555 2.53 CISPEP 1 GLU A 168 PRO A 169 0 -7.15 CISPEP 2 GLU B 168 PRO B 169 0 -2.41 CRYST1 73.480 73.480 99.340 90.00 90.00 90.00 P 41 21 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.013609 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013609 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010067 0.00000