HEADER OXIDOREDUCTASE 30-MAY-13 4L03 TITLE CRYSTAL STRUCTURE ANALYSIS OF HUMAN IDH1 MUTANTS IN COMPLEX WITH NADP+ TITLE 2 AND CA2+/ALPHA-KETOGLUTARATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ISOCITRATE DEHYDROGENASE [NADP] CYTOPLASMIC; COMPND 3 CHAIN: A, B, C; COMPND 4 SYNONYM: IDH, CYTOSOLIC NADP-ISOCITRATE DEHYDROGENASE, IDP, NADP(+)- COMPND 5 SPECIFIC ICDH, OXALOSUCCINATE DECARBOXYLASE; COMPND 6 EC: 1.1.1.42; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: IDH1, PICD; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2(DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET41A KEYWDS CYTOSOLIC, OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR N.O.CONCHA,A.M.SMALLWOOD REVDAT 3 28-FEB-24 4L03 1 REMARK SEQADV LINK REVDAT 2 15-NOV-17 4L03 1 REMARK REVDAT 1 17-JUL-13 4L03 0 JRNL AUTH A.R.RENDINA,B.PIETRAK,A.SMALLWOOD,H.ZHAO,H.QI,C.QUINN, JRNL AUTH 2 N.D.ADAMS,N.CONCHA,C.DURAISWAMI,S.H.THRALL,S.SWEITZER, JRNL AUTH 3 B.SCHWARTZ JRNL TITL MUTANT IDH1 ENHANCES THE PRODUCTION OF 2-HYDROXYGLUTARATE JRNL TITL 2 DUE TO ITS KINETIC MECHANISM. JRNL REF BIOCHEMISTRY V. 52 4563 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23731180 JRNL DOI 10.1021/BI400514K REMARK 2 REMARK 2 RESOLUTION. 2.10 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8_1069 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.10 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.98 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 89668 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.230 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 4503 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 48.9800 - 6.5158 0.99 3052 159 0.1657 0.1651 REMARK 3 2 6.5158 - 5.1736 1.00 2944 151 0.1760 0.1803 REMARK 3 3 5.1736 - 4.5202 1.00 2886 184 0.1429 0.1815 REMARK 3 4 4.5202 - 4.1071 1.00 2899 149 0.1397 0.1624 REMARK 3 5 4.1071 - 3.8129 1.00 2853 166 0.1608 0.2202 REMARK 3 6 3.8129 - 3.5881 1.00 2904 128 0.1683 0.1989 REMARK 3 7 3.5881 - 3.4085 1.00 2880 144 0.1847 0.2544 REMARK 3 8 3.4085 - 3.2601 1.00 2863 161 0.1943 0.2240 REMARK 3 9 3.2601 - 3.1347 1.00 2889 134 0.1972 0.2870 REMARK 3 10 3.1347 - 3.0265 1.00 2873 127 0.1974 0.2572 REMARK 3 11 3.0265 - 2.9319 1.00 2851 149 0.2098 0.2610 REMARK 3 12 2.9319 - 2.8481 1.00 2863 126 0.2116 0.2765 REMARK 3 13 2.8481 - 2.7731 1.00 2851 164 0.2032 0.2535 REMARK 3 14 2.7731 - 2.7055 1.00 2852 153 0.2119 0.2656 REMARK 3 15 2.7055 - 2.6440 1.00 2841 146 0.2074 0.2750 REMARK 3 16 2.6440 - 2.5877 1.00 2871 128 0.2105 0.2968 REMARK 3 17 2.5877 - 2.5359 1.00 2811 179 0.2186 0.2534 REMARK 3 18 2.5359 - 2.4881 1.00 2827 154 0.2195 0.2989 REMARK 3 19 2.4881 - 2.4437 1.00 2851 148 0.2185 0.3003 REMARK 3 20 2.4437 - 2.4022 0.99 2789 161 0.2148 0.2176 REMARK 3 21 2.4022 - 2.3635 0.99 2805 164 0.2246 0.2784 REMARK 3 22 2.3635 - 2.3271 0.99 2822 160 0.2252 0.2661 REMARK 3 23 2.3271 - 2.2929 0.99 2803 140 0.2258 0.3018 REMARK 3 24 2.2929 - 2.2606 0.99 2823 155 0.2397 0.3225 REMARK 3 25 2.2606 - 2.2301 0.99 2812 153 0.2447 0.3017 REMARK 3 26 2.2301 - 2.2011 0.99 2777 160 0.2451 0.2933 REMARK 3 27 2.2011 - 2.1736 0.99 2801 137 0.2625 0.3290 REMARK 3 28 2.1736 - 2.1474 0.98 2776 147 0.2549 0.3190 REMARK 3 29 2.1474 - 2.1224 0.98 2772 154 0.2710 0.3019 REMARK 3 30 2.1224 - 2.1000 0.90 2524 122 0.2798 0.3289 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.650 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.35 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.005 10188 REMARK 3 ANGLE : 0.837 13785 REMARK 3 CHIRALITY : 0.075 1493 REMARK 3 PLANARITY : 0.005 1758 REMARK 3 DIHEDRAL : 15.466 3767 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND RESID 3:414 REMARK 3 ORIGIN FOR THE GROUP (A): -24.6608 -42.6075 18.6067 REMARK 3 T TENSOR REMARK 3 T11: 0.1850 T22: 0.1075 REMARK 3 T33: 0.0592 T12: 0.0583 REMARK 3 T13: 0.0050 T23: -0.0116 REMARK 3 L TENSOR REMARK 3 L11: 0.5658 L22: 0.7503 REMARK 3 L33: 0.7667 L12: 0.1851 REMARK 3 L13: -0.0373 L23: -0.1578 REMARK 3 S TENSOR REMARK 3 S11: -0.0219 S12: -0.0903 S13: 0.0286 REMARK 3 S21: 0.0874 S22: -0.0546 S23: -0.0792 REMARK 3 S31: 0.1885 S32: 0.1198 S33: 0.0558 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN B AND RESID 3:413 REMARK 3 ORIGIN FOR THE GROUP (A): -27.3435 -38.6961 -12.0687 REMARK 3 T TENSOR REMARK 3 T11: 0.3175 T22: 0.1963 REMARK 3 T33: 0.1126 T12: 0.0365 REMARK 3 T13: -0.0225 T23: 0.0209 REMARK 3 L TENSOR REMARK 3 L11: 0.5277 L22: 0.8230 REMARK 3 L33: 0.9364 L12: 0.0982 REMARK 3 L13: 0.0807 L23: 0.2639 REMARK 3 S TENSOR REMARK 3 S11: -0.0184 S12: 0.2325 S13: 0.0820 REMARK 3 S21: -0.3635 S22: -0.0081 S23: 0.0294 REMARK 3 S31: 0.0646 S32: 0.1117 S33: 0.0335 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4L03 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 13-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080011. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : NULL REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : GRAPHITE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-300 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO, HKL-2000 REMARK 200 DATA SCALING SOFTWARE : SCALEPACK, HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 89700 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.100 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.10 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.18 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.40 REMARK 200 R MERGE FOR SHELL (I) : 0.66300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.81 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.66 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 16-20% PEG MME 2000, 100MM MES, PH REMARK 280 6.9, VAPOR DIFFUSION, TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.16600 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.16600 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 48.09400 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 137.69150 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 48.09400 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 137.69150 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.16600 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 48.09400 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 137.69150 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.16600 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 48.09400 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 137.69150 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 11180 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31020 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -72.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10950 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 31230 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 116.33200 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 789 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 626 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 HIS A 419 REMARK 465 HIS A 420 REMARK 465 HIS A 421 REMARK 465 HIS A 422 REMARK 465 HIS A 423 REMARK 465 HIS A 424 REMARK 465 HIS A 425 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 SER B 415 REMARK 465 LEU B 416 REMARK 465 GLU B 417 REMARK 465 HIS B 418 REMARK 465 HIS B 419 REMARK 465 HIS B 420 REMARK 465 HIS B 421 REMARK 465 HIS B 422 REMARK 465 HIS B 423 REMARK 465 HIS B 424 REMARK 465 HIS B 425 REMARK 465 MET C 1 REMARK 465 SER C 2 REMARK 465 HIS C 420 REMARK 465 HIS C 421 REMARK 465 HIS C 422 REMARK 465 HIS C 423 REMARK 465 HIS C 424 REMARK 465 HIS C 425 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 LYS A 81 CD CE NZ REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 GLU B 36 CG CD OE1 OE2 REMARK 470 LYS B 65 CG CD CE NZ REMARK 470 LYS B 81 CG CD CE NZ REMARK 470 LYS B 151 CG CD CE NZ REMARK 470 GLU B 174 CG CD OE1 OE2 REMARK 470 LYS B 350 CG CD CE NZ REMARK 470 GLN B 411 CG CD OE1 NE2 REMARK 470 LYS B 413 CG CD CE NZ REMARK 470 LYS C 3 CG CD CE NZ REMARK 470 GLU C 174 CG CD OE1 OE2 REMARK 470 ARG C 314 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 345 CG CD CE NZ REMARK 470 LYS C 350 CG CD CE NZ REMARK 470 LYS C 381 CG CD CE NZ REMARK 470 LYS C 413 CG CD CE NZ REMARK 470 GLU C 417 CG CD OE1 OE2 REMARK 470 HIS C 419 CG ND1 CD2 CE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 N LYS C 3 O PRO C 33 1.39 REMARK 500 O HOH C 697 O HOH C 698 1.98 REMARK 500 O HOH A 618 O HOH A 786 2.06 REMARK 500 OD1 ASP C 253 O HOH C 734 2.11 REMARK 500 O HOH A 825 O HOH A 855 2.13 REMARK 500 O HOH A 787 O HOH A 788 2.14 REMARK 500 O HOH C 628 O HOH C 671 2.15 REMARK 500 O HOH C 709 O HOH C 710 2.16 REMARK 500 O HOH B 611 O HOH B 740 2.16 REMARK 500 OE1 GLU B 229 O HOH B 765 2.16 REMARK 500 O HOH B 651 O HOH B 765 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH C 690 O HOH C 711 4556 1.99 REMARK 500 O HOH C 711 O HOH C 734 4556 1.99 REMARK 500 O HOH C 640 O HOH C 697 4556 1.99 REMARK 500 O HOH A 786 O HOH A 788 3455 2.08 REMARK 500 O HOH C 625 O HOH C 682 4556 2.09 REMARK 500 O HOH C 671 O HOH C 684 4556 2.11 REMARK 500 O HOH A 787 O HOH A 787 3455 2.13 REMARK 500 O HOH C 670 O HOH C 701 4556 2.13 REMARK 500 O HOH A 785 O HOH A 787 3455 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 17 -135.10 55.95 REMARK 500 ILE A 31 -62.61 -105.15 REMARK 500 ASN A 68 -8.04 75.22 REMARK 500 ASP A 137 -138.23 58.29 REMARK 500 LYS A 301 -52.43 -128.10 REMARK 500 GLU B 17 -136.99 51.13 REMARK 500 ASN B 68 -10.20 73.62 REMARK 500 ASP B 137 -137.42 58.11 REMARK 500 GLN B 234 -59.56 -128.66 REMARK 500 LYS B 301 -56.33 -127.81 REMARK 500 GLU C 17 -134.59 50.05 REMARK 500 ILE C 31 -64.64 -105.37 REMARK 500 ASN C 68 -9.17 73.74 REMARK 500 ASP C 137 -139.35 57.16 REMARK 500 ILE C 215 -60.12 -95.17 REMARK 500 LYS C 321 -169.10 -75.11 REMARK 500 SER C 415 -23.80 63.79 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 GLU C 262 GLY C 263 -44.86 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA B 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 252 OD2 REMARK 620 2 ASP B 275 OD1 83.9 REMARK 620 3 ASP B 279 OD2 94.1 108.0 REMARK 620 4 AKG B 503 O2 141.1 74.2 122.9 REMARK 620 5 AKG B 503 O5 77.1 88.5 160.5 70.7 REMARK 620 6 HOH B 601 O 133.7 74.2 56.8 70.5 140.5 REMARK 620 7 HOH B 602 O 123.1 152.1 66.7 85.9 103.3 80.9 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA A 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 275 OD1 REMARK 620 2 ASP A 279 OD2 113.8 REMARK 620 3 AKG A 504 O2 83.3 146.7 REMARK 620 4 AKG A 504 O5 86.2 140.1 65.2 REMARK 620 5 HOH A 601 O 168.4 76.0 91.3 82.2 REMARK 620 6 HOH A 602 O 105.8 70.6 77.4 139.2 82.8 REMARK 620 7 ASP B 252 OD2 75.8 84.4 128.5 66.8 100.0 153.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 502 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 275 OD1 REMARK 620 2 ASP C 279 OD2 119.9 REMARK 620 3 AKG C 503 O2 83.0 147.8 REMARK 620 4 AKG C 503 O5 77.0 139.4 63.1 REMARK 620 5 HOH C 601 O 162.5 75.1 87.2 85.6 REMARK 620 6 HOH C 602 O 100.6 81.0 72.2 135.3 90.0 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA B 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG B 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP C 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE AKG C 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KZO RELATED DB: PDB REMARK 900 RELATED ID: 4L04 RELATED DB: PDB REMARK 900 RELATED ID: 4L06 RELATED DB: PDB DBREF 4L03 A 1 414 UNP O75874 IDHC_HUMAN 1 414 DBREF 4L03 B 1 414 UNP O75874 IDHC_HUMAN 1 414 DBREF 4L03 C 1 414 UNP O75874 IDHC_HUMAN 1 414 SEQADV 4L03 ASP A 97 UNP O75874 GLY 97 CONFLICT SEQADV 4L03 SER A 415 UNP O75874 EXPRESSION TAG SEQADV 4L03 LEU A 416 UNP O75874 EXPRESSION TAG SEQADV 4L03 GLU A 417 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS A 418 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS A 419 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS A 420 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS A 421 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS A 422 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS A 423 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS A 424 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS A 425 UNP O75874 EXPRESSION TAG SEQADV 4L03 ASP B 97 UNP O75874 GLY 97 CONFLICT SEQADV 4L03 SER B 415 UNP O75874 EXPRESSION TAG SEQADV 4L03 LEU B 416 UNP O75874 EXPRESSION TAG SEQADV 4L03 GLU B 417 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS B 418 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS B 419 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS B 420 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS B 421 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS B 422 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS B 423 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS B 424 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS B 425 UNP O75874 EXPRESSION TAG SEQADV 4L03 ASP C 97 UNP O75874 GLY 97 CONFLICT SEQADV 4L03 SER C 415 UNP O75874 EXPRESSION TAG SEQADV 4L03 LEU C 416 UNP O75874 EXPRESSION TAG SEQADV 4L03 GLU C 417 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS C 418 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS C 419 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS C 420 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS C 421 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS C 422 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS C 423 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS C 424 UNP O75874 EXPRESSION TAG SEQADV 4L03 HIS C 425 UNP O75874 EXPRESSION TAG SEQRES 1 A 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 A 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 A 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 A 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 A 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 A 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 A 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 A 425 TRP LYS SER PRO ASN ASP THR ILE ARG ASN ILE LEU GLY SEQRES 9 A 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 A 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 A 425 GLY ARG HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 A 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 A 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 A 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 A 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 A 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 A 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 A 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 A 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 A 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 A 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 A 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 A 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 A 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 A 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 A 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 A 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 A 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 A 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 A 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 A 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 A 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 A 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 B 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 B 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 B 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 B 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 B 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 B 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 B 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 B 425 TRP LYS SER PRO ASN ASP THR ILE ARG ASN ILE LEU GLY SEQRES 9 B 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 B 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 B 425 GLY ARG HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 B 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 B 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 B 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 B 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 B 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 B 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 B 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 B 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 B 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 B 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 B 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 B 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 B 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 B 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 B 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 B 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 B 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 B 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 B 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 B 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 B 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 B 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS SEQRES 1 C 425 MET SER LYS LYS ILE SER GLY GLY SER VAL VAL GLU MET SEQRES 2 C 425 GLN GLY ASP GLU MET THR ARG ILE ILE TRP GLU LEU ILE SEQRES 3 C 425 LYS GLU LYS LEU ILE PHE PRO TYR VAL GLU LEU ASP LEU SEQRES 4 C 425 HIS SER TYR ASP LEU GLY ILE GLU ASN ARG ASP ALA THR SEQRES 5 C 425 ASN ASP GLN VAL THR LYS ASP ALA ALA GLU ALA ILE LYS SEQRES 6 C 425 LYS HIS ASN VAL GLY VAL LYS CYS ALA THR ILE THR PRO SEQRES 7 C 425 ASP GLU LYS ARG VAL GLU GLU PHE LYS LEU LYS GLN MET SEQRES 8 C 425 TRP LYS SER PRO ASN ASP THR ILE ARG ASN ILE LEU GLY SEQRES 9 C 425 GLY THR VAL PHE ARG GLU ALA ILE ILE CYS LYS ASN ILE SEQRES 10 C 425 PRO ARG LEU VAL SER GLY TRP VAL LYS PRO ILE ILE ILE SEQRES 11 C 425 GLY ARG HIS ALA TYR GLY ASP GLN TYR ARG ALA THR ASP SEQRES 12 C 425 PHE VAL VAL PRO GLY PRO GLY LYS VAL GLU ILE THR TYR SEQRES 13 C 425 THR PRO SER ASP GLY THR GLN LYS VAL THR TYR LEU VAL SEQRES 14 C 425 HIS ASN PHE GLU GLU GLY GLY GLY VAL ALA MET GLY MET SEQRES 15 C 425 TYR ASN GLN ASP LYS SER ILE GLU ASP PHE ALA HIS SER SEQRES 16 C 425 SER PHE GLN MET ALA LEU SER LYS GLY TRP PRO LEU TYR SEQRES 17 C 425 LEU SER THR LYS ASN THR ILE LEU LYS LYS TYR ASP GLY SEQRES 18 C 425 ARG PHE LYS ASP ILE PHE GLN GLU ILE TYR ASP LYS GLN SEQRES 19 C 425 TYR LYS SER GLN PHE GLU ALA GLN LYS ILE TRP TYR GLU SEQRES 20 C 425 HIS ARG LEU ILE ASP ASP MET VAL ALA GLN ALA MET LYS SEQRES 21 C 425 SER GLU GLY GLY PHE ILE TRP ALA CYS LYS ASN TYR ASP SEQRES 22 C 425 GLY ASP VAL GLN SER ASP SER VAL ALA GLN GLY TYR GLY SEQRES 23 C 425 SER LEU GLY MET MET THR SER VAL LEU VAL CYS PRO ASP SEQRES 24 C 425 GLY LYS THR VAL GLU ALA GLU ALA ALA HIS GLY THR VAL SEQRES 25 C 425 THR ARG HIS TYR ARG MET TYR GLN LYS GLY GLN GLU THR SEQRES 26 C 425 SER THR ASN PRO ILE ALA SER ILE PHE ALA TRP THR ARG SEQRES 27 C 425 GLY LEU ALA HIS ARG ALA LYS LEU ASP ASN ASN LYS GLU SEQRES 28 C 425 LEU ALA PHE PHE ALA ASN ALA LEU GLU GLU VAL SER ILE SEQRES 29 C 425 GLU THR ILE GLU ALA GLY PHE MET THR LYS ASP LEU ALA SEQRES 30 C 425 ALA CYS ILE LYS GLY LEU PRO ASN VAL GLN ARG SER ASP SEQRES 31 C 425 TYR LEU ASN THR PHE GLU PHE MET ASP LYS LEU GLY GLU SEQRES 32 C 425 ASN LEU LYS ILE LYS LEU ALA GLN ALA LYS LEU SER LEU SEQRES 33 C 425 GLU HIS HIS HIS HIS HIS HIS HIS HIS HET NAP A 501 48 HET CA A 502 1 HET EDO A 503 4 HET AKG A 504 10 HET NAP B 501 48 HET CA B 502 1 HET AKG B 503 10 HET NAP C 501 48 HET CA C 502 1 HET AKG C 503 10 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM CA CALCIUM ION HETNAM EDO 1,2-ETHANEDIOL HETNAM AKG 2-OXOGLUTARIC ACID HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE HETSYN EDO ETHYLENE GLYCOL FORMUL 4 NAP 3(C21 H28 N7 O17 P3) FORMUL 5 CA 3(CA 2+) FORMUL 6 EDO C2 H6 O2 FORMUL 7 AKG 3(C5 H6 O5) FORMUL 14 HOH *581(H2 O) HELIX 1 1 ASP A 16 LEU A 30 1 15 HELIX 2 2 GLY A 45 THR A 52 1 8 HELIX 3 3 ASP A 54 ASN A 68 1 15 HELIX 4 4 ASP A 79 LYS A 87 1 9 HELIX 5 5 SER A 94 GLY A 104 1 11 HELIX 6 6 GLY A 136 ARG A 140 5 5 HELIX 7 7 ASP A 186 GLY A 204 1 19 HELIX 8 8 LYS A 218 TYR A 235 1 18 HELIX 9 9 TYR A 235 GLN A 242 1 8 HELIX 10 10 ILE A 251 SER A 261 1 11 HELIX 11 11 LYS A 270 TYR A 285 1 16 HELIX 12 12 VAL A 312 LYS A 321 1 10 HELIX 13 13 PRO A 329 ASN A 348 1 20 HELIX 14 14 ASN A 349 ALA A 369 1 21 HELIX 15 15 THR A 373 LYS A 381 1 9 HELIX 16 16 GLY A 382 VAL A 386 5 5 HELIX 17 17 GLN A 387 TYR A 391 5 5 HELIX 18 18 ASN A 393 SER A 415 1 23 HELIX 19 19 ASP B 16 LEU B 30 1 15 HELIX 20 20 GLY B 45 THR B 52 1 8 HELIX 21 21 ASP B 54 ASN B 68 1 15 HELIX 22 22 ASP B 79 LYS B 87 1 9 HELIX 23 23 SER B 94 GLY B 104 1 11 HELIX 24 24 GLY B 136 ARG B 140 5 5 HELIX 25 25 ASP B 186 GLY B 204 1 19 HELIX 26 26 LYS B 218 GLN B 234 1 17 HELIX 27 27 TYR B 235 GLN B 242 1 8 HELIX 28 28 ILE B 251 SER B 261 1 11 HELIX 29 29 LYS B 270 TYR B 285 1 16 HELIX 30 30 VAL B 312 LYS B 321 1 10 HELIX 31 31 PRO B 329 ASN B 348 1 20 HELIX 32 32 ASN B 349 ALA B 369 1 21 HELIX 33 33 THR B 373 GLY B 382 1 10 HELIX 34 34 LEU B 383 VAL B 386 5 4 HELIX 35 35 GLN B 387 TYR B 391 5 5 HELIX 36 36 ASN B 393 LYS B 413 1 21 HELIX 37 37 ASP C 16 LEU C 30 1 15 HELIX 38 38 GLY C 45 THR C 52 1 8 HELIX 39 39 ASP C 54 ASN C 68 1 15 HELIX 40 40 ASP C 79 LYS C 87 1 9 HELIX 41 41 SER C 94 GLY C 104 1 11 HELIX 42 42 GLY C 136 ALA C 141 5 6 HELIX 43 43 GLN C 185 GLY C 204 1 20 HELIX 44 44 LYS C 218 TYR C 235 1 18 HELIX 45 45 TYR C 235 GLN C 242 1 8 HELIX 46 46 ILE C 251 SER C 261 1 11 HELIX 47 47 LYS C 270 TYR C 285 1 16 HELIX 48 48 VAL C 312 LYS C 321 1 10 HELIX 49 49 PRO C 329 ASN C 348 1 20 HELIX 50 50 ASN C 349 ALA C 369 1 21 HELIX 51 51 THR C 373 GLY C 382 1 10 HELIX 52 52 GLN C 387 TYR C 391 5 5 HELIX 53 53 ASN C 393 LEU C 414 1 22 SHEET 1 A10 VAL A 35 ASP A 43 0 SHEET 2 A10 ILE A 5 GLN A 14 1 N GLY A 7 O GLU A 36 SHEET 3 A10 VAL A 69 LYS A 72 1 O VAL A 71 N VAL A 11 SHEET 4 A10 VAL A 303 GLU A 306 1 O ALA A 305 N GLY A 70 SHEET 5 A10 MET A 291 VAL A 296 -1 N LEU A 295 O GLU A 304 SHEET 6 A10 THR A 106 ALA A 111 -1 N GLU A 110 O THR A 292 SHEET 7 A10 ILE A 128 HIS A 133 -1 O ARG A 132 N VAL A 107 SHEET 8 A10 PHE A 265 CYS A 269 1 O CYS A 269 N GLY A 131 SHEET 9 A10 LEU A 207 THR A 211 1 N TYR A 208 O ALA A 268 SHEET 10 A10 TYR A 246 LEU A 250 1 O ARG A 249 N LEU A 209 SHEET 1 B 4 THR A 142 VAL A 146 0 SHEET 2 B 4 GLY A 177 GLN A 185 -1 O GLY A 177 N VAL A 146 SHEET 3 B 4 GLY B 177 GLN B 185 -1 O MET B 180 N MET A 182 SHEET 4 B 4 THR B 142 VAL B 146 -1 N VAL B 146 O GLY B 177 SHEET 1 C 4 VAL A 165 PHE A 172 0 SHEET 2 C 4 GLY A 150 PRO A 158 -1 N GLY A 150 O PHE A 172 SHEET 3 C 4 GLY B 150 PRO B 158 -1 O THR B 155 N GLU A 153 SHEET 4 C 4 VAL B 165 PHE B 172 -1 O PHE B 172 N GLY B 150 SHEET 1 D10 VAL B 35 ASP B 43 0 SHEET 2 D10 ILE B 5 GLN B 14 1 N ILE B 5 O GLU B 36 SHEET 3 D10 VAL B 69 LYS B 72 1 O VAL B 71 N VAL B 11 SHEET 4 D10 VAL B 303 GLU B 306 1 O ALA B 305 N GLY B 70 SHEET 5 D10 MET B 291 VAL B 296 -1 N LEU B 295 O GLU B 304 SHEET 6 D10 THR B 106 ALA B 111 -1 N THR B 106 O VAL B 296 SHEET 7 D10 ILE B 128 HIS B 133 -1 O ARG B 132 N VAL B 107 SHEET 8 D10 PHE B 265 CYS B 269 1 O CYS B 269 N GLY B 131 SHEET 9 D10 LEU B 207 THR B 211 1 N TYR B 208 O ALA B 268 SHEET 10 D10 TYR B 246 LEU B 250 1 O ARG B 249 N LEU B 209 SHEET 1 E10 VAL C 35 ASP C 43 0 SHEET 2 E10 ILE C 5 GLN C 14 1 N ILE C 5 O GLU C 36 SHEET 3 E10 VAL C 69 LYS C 72 1 O VAL C 71 N VAL C 11 SHEET 4 E10 VAL C 303 GLU C 306 1 O ALA C 305 N GLY C 70 SHEET 5 E10 MET C 291 VAL C 296 -1 N LEU C 295 O GLU C 304 SHEET 6 E10 THR C 106 ALA C 111 -1 N THR C 106 O VAL C 296 SHEET 7 E10 ILE C 128 HIS C 133 -1 O ARG C 132 N VAL C 107 SHEET 8 E10 PHE C 265 CYS C 269 1 O CYS C 269 N GLY C 131 SHEET 9 E10 LEU C 207 THR C 211 1 N TYR C 208 O ALA C 268 SHEET 10 E10 TYR C 246 LEU C 250 1 O ARG C 249 N LEU C 209 SHEET 1 F 2 THR C 142 VAL C 146 0 SHEET 2 F 2 GLY C 177 GLY C 181 -1 O GLY C 177 N VAL C 146 SHEET 1 G 2 GLY C 150 TYR C 156 0 SHEET 2 G 2 VAL C 165 PHE C 172 -1 O PHE C 172 N GLY C 150 LINK OD2 ASP A 252 CA CA B 502 1555 1555 2.84 LINK OD1 ASP A 275 CA CA A 502 1555 1555 2.20 LINK OD2 ASP A 279 CA CA A 502 1555 1555 2.46 LINK CA CA A 502 O2 AKG A 504 1555 1555 2.27 LINK CA CA A 502 O5 AKG A 504 1555 1555 2.76 LINK CA CA A 502 O HOH A 601 1555 1555 2.44 LINK CA CA A 502 O HOH A 602 1555 1555 2.44 LINK CA CA A 502 OD2 ASP B 252 1555 1555 2.31 LINK OD1 ASP B 275 CA CA B 502 1555 1555 2.27 LINK OD2 ASP B 279 CA CA B 502 1555 1555 2.65 LINK CA CA B 502 O2 AKG B 503 1555 1555 2.28 LINK CA CA B 502 O5 AKG B 503 1555 1555 2.48 LINK CA CA B 502 O HOH B 601 1555 1555 2.10 LINK CA CA B 502 O HOH B 602 1555 1555 2.37 LINK OD1 ASP C 275 CA CA C 502 1555 1555 2.28 LINK OD2 ASP C 279 CA CA C 502 1555 1555 2.44 LINK CA CA C 502 O2 AKG C 503 1555 1555 2.20 LINK CA CA C 502 O5 AKG C 503 1555 1555 2.90 LINK CA CA C 502 O HOH C 601 1555 1555 2.40 LINK CA CA C 502 O HOH C 602 1555 1555 2.30 SITE 1 AC1 33 LYS A 72 ALA A 74 THR A 75 THR A 77 SITE 2 AC1 33 ARG A 82 ASN A 96 LEU A 288 ALA A 307 SITE 3 AC1 33 ALA A 308 HIS A 309 GLY A 310 THR A 311 SITE 4 AC1 33 VAL A 312 THR A 313 ARG A 314 HIS A 315 SITE 5 AC1 33 ASN A 328 AKG A 504 HOH A 608 HOH A 613 SITE 6 AC1 33 HOH A 614 HOH A 620 HOH A 636 HOH A 656 SITE 7 AC1 33 HOH A 768 HOH A 806 HOH A 807 LEU B 250 SITE 8 AC1 33 ASP B 253 GLN B 257 LYS B 260 HOH B 609 SITE 9 AC1 33 HOH B 640 SITE 1 AC2 6 ASP A 275 ASP A 279 AKG A 504 HOH A 601 SITE 2 AC2 6 HOH A 602 ASP B 252 SITE 1 AC3 5 ASP A 273 VAL A 276 GLN A 277 ASP B 273 SITE 2 AC3 5 GLN B 277 SITE 1 AC4 15 THR A 77 SER A 94 ASN A 96 ARG A 100 SITE 2 AC4 15 ARG A 109 ARG A 132 ASP A 275 ALA A 308 SITE 3 AC4 15 NAP A 501 CA A 502 HOH A 602 HOH A 721 SITE 4 AC4 15 LYS B 212 ASP B 252 HOH B 609 SITE 1 AC5 33 LEU A 250 ASP A 253 GLN A 257 LYS A 260 SITE 2 AC5 33 HOH A 619 HOH A 702 HOH A 707 LYS B 72 SITE 3 AC5 33 ALA B 74 THR B 75 ILE B 76 THR B 77 SITE 4 AC5 33 ARG B 82 ASN B 96 ALA B 308 HIS B 309 SITE 5 AC5 33 GLY B 310 THR B 311 VAL B 312 THR B 313 SITE 6 AC5 33 ARG B 314 HIS B 315 ASN B 328 AKG B 503 SITE 7 AC5 33 HOH B 616 HOH B 619 HOH B 645 HOH B 663 SITE 8 AC5 33 HOH B 668 HOH B 716 HOH B 719 HOH B 724 SITE 9 AC5 33 HOH B 725 SITE 1 AC6 6 ASP A 252 ASP B 275 ASP B 279 AKG B 503 SITE 2 AC6 6 HOH B 601 HOH B 602 SITE 1 AC7 16 LYS A 212 ASP A 252 THR B 77 SER B 94 SITE 2 AC7 16 ASN B 96 ARG B 100 ARG B 109 ARG B 132 SITE 3 AC7 16 ASP B 275 ALA B 308 NAP B 501 CA B 502 SITE 4 AC7 16 HOH B 601 HOH B 616 HOH B 680 HOH B 681 SITE 1 AC8 31 LYS C 72 ALA C 74 THR C 75 THR C 77 SITE 2 AC8 31 ARG C 82 ASN C 96 LEU C 250 ASP C 253 SITE 3 AC8 31 GLN C 257 LYS C 260 ALA C 307 ALA C 308 SITE 4 AC8 31 HIS C 309 GLY C 310 THR C 311 VAL C 312 SITE 5 AC8 31 THR C 313 ARG C 314 HIS C 315 ASN C 328 SITE 6 AC8 31 AKG C 503 HOH C 610 HOH C 614 HOH C 619 SITE 7 AC8 31 HOH C 623 HOH C 631 HOH C 645 HOH C 670 SITE 8 AC8 31 HOH C 673 HOH C 702 HOH C 711 SITE 1 AC9 6 ASP C 252 ASP C 275 ASP C 279 AKG C 503 SITE 2 AC9 6 HOH C 601 HOH C 602 SITE 1 BC1 17 THR C 77 SER C 94 ASN C 96 ARG C 100 SITE 2 BC1 17 ARG C 109 ARG C 132 LYS C 212 ILE C 215 SITE 3 BC1 17 ASP C 252 ASP C 275 ALA C 308 NAP C 501 SITE 4 BC1 17 CA C 502 HOH C 602 HOH C 610 HOH C 672 SITE 5 BC1 17 HOH C 675 CRYST1 96.188 275.383 116.332 90.00 90.00 90.00 C 2 2 21 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010396 0.000000 0.000000 0.00000 SCALE2 0.000000 0.003631 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008596 0.00000