HEADER OXIDOREDUCTASE 31-MAY-13 4L0E TITLE STRUCTURE OF P450SKY (CYP163B3), A CYTOCHROME P450 FROM SKYLLAMYCIN TITLE 2 BIOSYNTHESIS (HEME-COORDINATED EXPRESSION TAG) COMPND MOL_ID: 1; COMPND 2 MOLECULE: P450 MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME P450 SKY32 (CYP163B3); COMPND 5 EC: 1.14.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1001349; SOURCE 4 STRAIN: ACTA 2897; SOURCE 5 GENE: SKY32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS CYTOCHROME P450, SKYLLAMYCIN BIOSYNTHESIS, BETA-AMINOACYL CARRIER KEYWDS 2 PROTEIN OXIDASE, SKYLLAMYCIN NONRIBOSOMAL PEPTIDE SYNTHETASE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CRYLE REVDAT 4 20-SEP-23 4L0E 1 REMARK SEQADV REVDAT 3 27-NOV-13 4L0E 1 JRNL REVDAT 2 16-OCT-13 4L0E 1 JRNL REVDAT 1 25-SEP-13 4L0E 0 JRNL AUTH S.UHLMANN,R.D.SUSSMUTH,M.J.CRYLE JRNL TITL CYTOCHROME P450SKY INTERACTS DIRECTLY WITH THE NONRIBOSOMAL JRNL TITL 2 PEPTIDE SYNTHETASE TO GENERATE THREE AMINO ACID PRECURSORS JRNL TITL 3 IN SKYLLAMYCIN BIOSYNTHESIS. JRNL REF ACS CHEM.BIOL. V. 8 2586 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 24079328 JRNL DOI 10.1021/CB400555E REMARK 2 REMARK 2 RESOLUTION. 2.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 16427 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.251 REMARK 3 R VALUE (WORKING SET) : 0.248 REMARK 3 FREE R VALUE : 0.293 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 821 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.77 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1147 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.2850 REMARK 3 BIN FREE R VALUE SET COUNT : 61 REMARK 3 BIN FREE R VALUE : 0.3580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3429 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 58 REMARK 3 SOLVENT ATOMS : 13 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 58.02 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 59.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.59000 REMARK 3 B22 (A**2) : 1.59000 REMARK 3 B33 (A**2) : -2.39000 REMARK 3 B12 (A**2) : 0.80000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 1.015 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.382 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.334 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 32.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.909 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.888 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3575 ; 0.006 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4885 ; 0.883 ; 1.993 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 440 ; 5.022 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 165 ;29.735 ;23.576 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 564 ;15.858 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 28 ;16.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 541 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2743 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2194 ; 0.126 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3538 ; 0.242 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1381 ; 0.375 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1346 ; 0.642 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -21 A 56 REMARK 3 ORIGIN FOR THE GROUP (A): 60.2972 -14.1258 -0.1834 REMARK 3 T TENSOR REMARK 3 T11: 0.2289 T22: 0.4902 REMARK 3 T33: 0.8715 T12: 0.1072 REMARK 3 T13: -0.1642 T23: -0.3493 REMARK 3 L TENSOR REMARK 3 L11: 1.2874 L22: 3.4708 REMARK 3 L33: 10.2693 L12: -1.3897 REMARK 3 L13: 3.6247 L23: -4.2026 REMARK 3 S TENSOR REMARK 3 S11: 0.0403 S12: 0.1235 S13: -0.2955 REMARK 3 S21: 0.3551 S22: 0.6290 S23: -0.8298 REMARK 3 S31: 0.0647 S32: 0.1808 S33: -0.6693 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 57 A 151 REMARK 3 ORIGIN FOR THE GROUP (A): 39.0481 -5.3830 -12.9835 REMARK 3 T TENSOR REMARK 3 T11: 0.2347 T22: 0.1077 REMARK 3 T33: 0.2039 T12: -0.0675 REMARK 3 T13: -0.0309 T23: -0.0008 REMARK 3 L TENSOR REMARK 3 L11: 3.0661 L22: 1.5126 REMARK 3 L33: 4.0817 L12: 0.2772 REMARK 3 L13: -0.5672 L23: 1.5572 REMARK 3 S TENSOR REMARK 3 S11: 0.0174 S12: 0.3689 S13: 0.1031 REMARK 3 S21: -0.3007 S22: 0.1410 S23: -0.0135 REMARK 3 S31: -0.4317 S32: -0.1978 S33: -0.1583 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 152 A 193 REMARK 3 ORIGIN FOR THE GROUP (A): 32.4184 -20.8234 -11.4042 REMARK 3 T TENSOR REMARK 3 T11: 0.6987 T22: 0.2179 REMARK 3 T33: 0.3769 T12: -0.1251 REMARK 3 T13: 0.2336 T23: -0.0292 REMARK 3 L TENSOR REMARK 3 L11: 4.7571 L22: 5.1484 REMARK 3 L33: 8.3268 L12: 0.7649 REMARK 3 L13: 3.1344 L23: 3.9280 REMARK 3 S TENSOR REMARK 3 S11: -0.1905 S12: -0.1536 S13: -0.5313 REMARK 3 S21: 1.6142 S22: 0.1154 S23: 0.3317 REMARK 3 S31: 1.0241 S32: 0.0382 S33: 0.0751 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 194 A 304 REMARK 3 ORIGIN FOR THE GROUP (A): 36.7022 -7.3407 -11.5283 REMARK 3 T TENSOR REMARK 3 T11: 0.2037 T22: 0.0880 REMARK 3 T33: 0.1760 T12: -0.0485 REMARK 3 T13: 0.0396 T23: 0.0057 REMARK 3 L TENSOR REMARK 3 L11: 2.2771 L22: 2.3413 REMARK 3 L33: 3.3278 L12: 0.4942 REMARK 3 L13: -0.3264 L23: 1.9584 REMARK 3 S TENSOR REMARK 3 S11: -0.0896 S12: 0.3306 S13: -0.0857 REMARK 3 S21: -0.1956 S22: -0.0626 S23: 0.1444 REMARK 3 S31: -0.0695 S32: -0.3127 S33: 0.1522 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 305 A 384 REMARK 3 ORIGIN FOR THE GROUP (A): 47.6430 0.8853 -5.9189 REMARK 3 T TENSOR REMARK 3 T11: 0.2134 T22: 0.0432 REMARK 3 T33: 0.2118 T12: -0.0775 REMARK 3 T13: 0.0444 T23: -0.0249 REMARK 3 L TENSOR REMARK 3 L11: 2.5571 L22: 1.5866 REMARK 3 L33: 4.7437 L12: -0.0503 REMARK 3 L13: 0.1372 L23: 1.7776 REMARK 3 S TENSOR REMARK 3 S11: 0.1477 S12: 0.0801 S13: 0.2228 REMARK 3 S21: -0.3874 S22: 0.1892 S23: -0.3821 REMARK 3 S31: -0.5553 S32: 0.3825 S33: -0.3368 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 385 A 420 REMARK 3 ORIGIN FOR THE GROUP (A): 37.9904 -11.5060 8.0246 REMARK 3 T TENSOR REMARK 3 T11: 0.1873 T22: 0.1554 REMARK 3 T33: 0.1526 T12: -0.0659 REMARK 3 T13: -0.0837 T23: 0.1022 REMARK 3 L TENSOR REMARK 3 L11: 11.1126 L22: 5.2775 REMARK 3 L33: 12.3159 L12: -2.5140 REMARK 3 L13: -7.5035 L23: 2.5771 REMARK 3 S TENSOR REMARK 3 S11: -0.2955 S12: -0.8979 S13: -0.7971 REMARK 3 S21: 0.5975 S22: 0.0724 S23: 0.0939 REMARK 3 S31: 0.9776 S32: -0.1665 S33: 0.2231 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4L0E COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080022. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 27-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000000 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 16458 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.700 REMARK 200 RESOLUTION RANGE LOW (A) : 42.943 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.07700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.5800 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.80 REMARK 200 COMPLETENESS FOR SHELL (%) : 98.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.57200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.820 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 3MGX REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 59.36 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.03 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, 1.4 M AMMONIUM SULFATE, REMARK 280 0.1 M SODIUM CHLORIDE, PH 7.5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 32 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+1/3 REMARK 290 6555 -X,-X+Y,-Z+2/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 82.22000 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 41.11000 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 41.11000 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 82.22000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 ALA A 185 REMARK 465 ASP A 186 REMARK 465 VAL A 421 REMARK 465 ARG A 422 REMARK 465 SER A 423 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 289 O PRO A 335 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A -14 -58.35 -124.18 REMARK 500 HIS A -13 -159.52 60.05 REMARK 500 SER A -12 24.68 -73.44 REMARK 500 ALA A 50 159.13 -48.32 REMARK 500 PRO A 51 -164.21 -125.93 REMARK 500 GLU A 75 0.09 -63.83 REMARK 500 VAL A 149 -63.42 -120.39 REMARK 500 GLU A 209 24.59 -78.95 REMARK 500 GLU A 216 -19.82 68.99 REMARK 500 ASP A 249 -86.65 -102.46 REMARK 500 ASP A 334 77.29 49.84 REMARK 500 ASN A 345 52.91 -140.99 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 357 SG REMARK 620 2 HEM A 501 NA 96.5 REMARK 620 3 HEM A 501 NB 87.2 90.4 REMARK 620 4 HEM A 501 NC 84.9 178.6 89.6 REMARK 620 5 HEM A 501 ND 91.5 89.9 178.7 90.2 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L0F RELATED DB: PDB REMARK 900 P450SKY (CYP163B3) DBREF 4L0E A 1 423 UNP F2YRY7 F2YRY7_9ACTO 1 423 SEQADV 4L0E MET A -22 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E GLY A -21 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E SER A -20 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E SER A -19 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E HIS A -18 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E HIS A -17 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E HIS A -16 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E HIS A -15 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E HIS A -14 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E HIS A -13 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E SER A -12 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E SER A -11 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E GLY A -10 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E LEU A -9 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E VAL A -8 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E PRO A -7 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E ARG A -6 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E GLY A -5 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E SER A -4 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E HIS A -3 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E SER A -2 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E GLY A -1 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0E HIS A 0 UNP F2YRY7 EXPRESSION TAG SEQRES 1 A 446 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 446 LEU VAL PRO ARG GLY SER HIS SER GLY HIS MET THR ALA SEQRES 3 A 446 HIS THR LEU PRO ILE PRO ASP ASP ILE SER THR ILE ASN SEQRES 4 A 446 LEU THR ASP PRO ARG THR TYR GLU VAL ASN ASP LEU SER SEQRES 5 A 446 GLU TYR TRP ARG GLN LEU ARG THR THR ARG PRO LEU TYR SEQRES 6 A 446 TRP HIS PRO PRO VAL GLY ASP ALA PRO GLY PHE TRP VAL SEQRES 7 A 446 VAL SER ARG TYR ALA ASP VAL MET ALA LEU TYR LYS ASP SEQRES 8 A 446 ASN LYS LYS LEU THR SER GLU LYS GLY ASN VAL LEU VAL SEQRES 9 A 446 THR LEU LEU ALA GLY GLY ASP SER ALA ALA GLY LYS MET SEQRES 10 A 446 LEU ALA VAL THR ASP GLY ALA MET HIS ARG GLY LEU ARG SEQRES 11 A 446 ASN VAL LEU LEU LYS SER PHE SER PRO GLN ALA LEU LYS SEQRES 12 A 446 PRO ILE VAL ASP GLN ILE ARG VAL ASN THR THR ARG LEU SEQRES 13 A 446 VAL VAL ASP ALA ALA ARG ARG GLY GLU CYS ASP PHE ALA SEQRES 14 A 446 ALA ASP VAL ALA GLU GLN ILE PRO LEU ASN THR ILE SER SEQRES 15 A 446 ASP LEU LEU GLY VAL PRO ALA ALA ASP ARG GLU PHE LEU SEQRES 16 A 446 LEU LYS LEU ASN LYS SER ALA LEU SER SER GLU ASP ALA SEQRES 17 A 446 ASP GLN SER ALA THR ASP ALA TRP LEU ALA ARG ASN GLU SEQRES 18 A 446 ILE LEU LEU TYR PHE SER GLU LEU VAL ALA GLU ARG ARG SEQRES 19 A 446 ALA LYS PRO THR GLU ASP VAL ILE SER VAL LEU ALA ASN SEQRES 20 A 446 SER MET VAL ASP GLY LYS PRO LEU THR GLU GLU VAL ILE SEQRES 21 A 446 VAL LEU ASN CYS TYR SER LEU ILE LEU GLY GLY ASP GLU SEQRES 22 A 446 THR SER ARG LEU SER MET ILE ASP SER VAL GLN THR PHE SEQRES 23 A 446 THR GLN TYR PRO ASP GLN TRP GLU LEU LEU ARG ASP GLY SEQRES 24 A 446 LYS VAL THR LEU GLU SER ALA THR GLU GLU VAL LEU ARG SEQRES 25 A 446 TRP ALA THR PRO ALA MET HIS PHE GLY ARG ARG ALA VAL SEQRES 26 A 446 THR ASP MET GLU LEU HIS GLY GLN VAL ILE ALA ALA GLY SEQRES 27 A 446 ASP VAL VAL THR LEU TRP ASN ASN SER ALA ASN ARG ASP SEQRES 28 A 446 GLU GLU VAL PHE ALA ASP PRO TYR ALA PHE ASP LEU ASN SEQRES 29 A 446 ARG SER PRO ASN LYS HIS ILE THR PHE GLY TYR GLY PRO SEQRES 30 A 446 HIS PHE CYS LEU GLY ALA TYR LEU GLY ARG ALA GLU VAL SEQRES 31 A 446 HIS ALA LEU LEU ASP ALA LEU ARG THR TYR THR THR GLY SEQRES 32 A 446 PHE GLU ILE THR GLY GLU PRO GLN ARG ILE HIS SER ASN SEQRES 33 A 446 PHE LEU THR GLY LEU SER ARG LEU PRO VAL ARG ILE GLN SEQRES 34 A 446 PRO ASN GLU ALA ALA ILE ALA ALA TYR ASP SER ASP ASN SEQRES 35 A 446 GLY VAL ARG SER HET HEM A 501 43 HET SO4 A 502 5 HET SO4 A 503 5 HET SO4 A 504 5 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM SO4 SULFATE ION HETSYN HEM HEME FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 SO4 3(O4 S 2-) FORMUL 6 HOH *13(H2 O) HELIX 1 1 ASP A 19 GLU A 24 5 6 HELIX 2 2 LEU A 28 THR A 38 1 11 HELIX 3 3 ARG A 58 ASP A 68 1 11 HELIX 4 4 VAL A 79 GLY A 86 1 8 HELIX 5 5 MET A 94 THR A 98 5 5 HELIX 6 6 ASP A 99 LEU A 110 1 12 HELIX 7 7 LEU A 111 PHE A 114 5 4 HELIX 8 8 SER A 115 GLY A 141 1 27 HELIX 9 9 PHE A 145 VAL A 149 1 5 HELIX 10 10 ALA A 150 GLN A 152 5 3 HELIX 11 11 ILE A 153 GLY A 163 1 11 HELIX 12 12 PRO A 165 ALA A 167 5 3 HELIX 13 13 ASP A 168 LEU A 180 1 13 HELIX 14 14 SER A 188 LYS A 213 1 26 HELIX 15 15 ASP A 217 SER A 225 1 9 HELIX 16 16 THR A 233 GLY A 248 1 16 HELIX 17 17 ASP A 249 TYR A 266 1 18 HELIX 18 18 TYR A 266 ASP A 275 1 10 HELIX 19 19 THR A 279 THR A 292 1 14 HELIX 20 20 ASN A 322 ASN A 326 1 5 HELIX 21 21 TYR A 352 PHE A 356 5 5 HELIX 22 22 GLY A 359 TYR A 377 1 19 HELIX 23 23 ASN A 408 ASN A 419 1 12 SHEET 1 A 5 LEU A 41 HIS A 44 0 SHEET 2 A 5 PHE A 53 VAL A 56 -1 O PHE A 53 N HIS A 44 SHEET 3 A 5 VAL A 317 TRP A 321 1 O THR A 319 N TRP A 54 SHEET 4 A 5 HIS A 296 ALA A 301 -1 N PHE A 297 O LEU A 320 SHEET 5 A 5 LEU A 72 THR A 73 -1 N THR A 73 O ARG A 300 SHEET 1 B 3 GLU A 142 ASP A 144 0 SHEET 2 B 3 PRO A 402 PRO A 407 -1 O VAL A 403 N CYS A 143 SHEET 3 B 3 THR A 378 ILE A 383 -1 N GLY A 380 O GLN A 406 SHEET 1 C 2 MET A 305 LEU A 307 0 SHEET 2 C 2 GLN A 310 ILE A 312 -1 O ILE A 312 N MET A 305 SHEET 1 D 2 GLN A 388 ARG A 389 0 SHEET 2 D 2 LEU A 398 ARG A 400 -1 O SER A 399 N GLN A 388 LINK SG CYS A 357 FE HEM A 501 1555 1555 2.41 CISPEP 1 ALA A 50 PRO A 51 0 -5.75 CISPEP 2 GLU A 183 ASP A 184 0 -0.65 CISPEP 3 VAL A 227 ASP A 228 0 -3.68 CISPEP 4 SER A 343 PRO A 344 0 2.04 SITE 1 AC1 24 HIS A -13 SER A -12 TYR A 66 ASN A 78 SITE 2 AC1 24 LEU A 95 ALA A 96 HIS A 103 ARG A 107 SITE 3 AC1 24 ILE A 158 LEU A 244 GLY A 247 GLY A 248 SITE 4 AC1 24 THR A 251 SER A 255 LEU A 288 PHE A 297 SITE 5 AC1 24 ARG A 299 THR A 349 PHE A 350 GLY A 351 SITE 6 AC1 24 PRO A 354 HIS A 355 CYS A 357 GLY A 359 SITE 1 AC2 3 THR A 279 LEU A 280 ARG A 375 SITE 1 AC3 5 HIS A -18 HIS A -15 HIS A -17 ILE A 390 SITE 2 AC3 5 HIS A 391 SITE 1 AC4 4 THR A 264 TRP A 270 GLY A 380 PHE A 381 CRYST1 91.620 91.620 123.330 90.00 90.00 120.00 P 32 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010915 0.006302 0.000000 0.00000 SCALE2 0.000000 0.012603 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008108 0.00000