HEADER OXIDOREDUCTASE 31-MAY-13 4L0F TITLE STRUCTURE OF P450SKY (CYP163B3), A CYTOCHROME P450 FROM SKYLLAMYCIN TITLE 2 BIOSYNTHESIS (OPEN ACTIVE SITE) COMPND MOL_ID: 1; COMPND 2 MOLECULE: P450 MONOOXYGENASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: CYTOCHROME P450 SKY32 (CYP163B3); COMPND 5 EC: 1.14.-.-; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES SP.; SOURCE 3 ORGANISM_TAXID: 1001349; SOURCE 4 STRAIN: ACTA 2897; SOURCE 5 GENE: SKY32; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A(+) KEYWDS CYTOCHROME P450, SKYLLAMYCIN BIOSYNTHESIS, BETA-AMINOACYL CARRIER KEYWDS 2 PROTEIN OXIDASE, SKYLLAMYCIN NONRIBOSOMAL PEPTIDE SYNTHETASE, KEYWDS 3 OXIDOREDUCTASE EXPDTA X-RAY DIFFRACTION AUTHOR M.J.CRYLE REVDAT 4 20-SEP-23 4L0F 1 REMARK SEQADV LINK REVDAT 3 27-NOV-13 4L0F 1 JRNL REVDAT 2 16-OCT-13 4L0F 1 JRNL REVDAT 1 25-SEP-13 4L0F 0 JRNL AUTH S.UHLMANN,R.D.SUSSMUTH,M.J.CRYLE JRNL TITL CYTOCHROME P450SKY INTERACTS DIRECTLY WITH THE NONRIBOSOMAL JRNL TITL 2 PEPTIDE SYNTHETASE TO GENERATE THREE AMINO ACID PRECURSORS JRNL TITL 3 IN SKYLLAMYCIN BIOSYNTHESIS. JRNL REF ACS CHEM.BIOL. V. 8 2586 2013 JRNL REFN ISSN 1554-8929 JRNL PMID 24079328 JRNL DOI 10.1021/CB400555E REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.34 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 33891 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.221 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1784 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2294 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 100.0 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 121 REMARK 3 BIN FREE R VALUE : 0.3260 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3403 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 109 REMARK 3 SOLVENT ATOMS : 418 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 25.73 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 24.05 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.53000 REMARK 3 B22 (A**2) : -1.03000 REMARK 3 B33 (A**2) : 0.41000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.16000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.163 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.147 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.107 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.561 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.951 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.928 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3645 ; 0.011 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4957 ; 1.258 ; 2.003 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 454 ; 5.274 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 166 ;31.657 ;23.614 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 579 ;12.713 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 30 ;14.786 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 552 ; 0.084 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2769 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2208 ; 0.501 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3575 ; 0.909 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1437 ; 1.747 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1372 ; 2.760 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A -14 A 70 REMARK 3 ORIGIN FOR THE GROUP (A): 17.7597 -14.5297 25.8170 REMARK 3 T TENSOR REMARK 3 T11: 0.1156 T22: 0.0903 REMARK 3 T33: 0.0616 T12: -0.0380 REMARK 3 T13: -0.0364 T23: -0.0048 REMARK 3 L TENSOR REMARK 3 L11: 1.7011 L22: 3.6354 REMARK 3 L33: 2.4432 L12: -0.0667 REMARK 3 L13: -0.0070 L23: -0.0235 REMARK 3 S TENSOR REMARK 3 S11: 0.0352 S12: -0.2378 S13: -0.1298 REMARK 3 S21: 0.4920 S22: -0.0278 S23: -0.2211 REMARK 3 S31: 0.1382 S32: 0.1623 S33: -0.0075 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 71 A 166 REMARK 3 ORIGIN FOR THE GROUP (A): 12.8334 -19.1187 0.2558 REMARK 3 T TENSOR REMARK 3 T11: 0.0643 T22: 0.0971 REMARK 3 T33: 0.0792 T12: 0.0001 REMARK 3 T13: 0.0325 T23: -0.0069 REMARK 3 L TENSOR REMARK 3 L11: 0.3901 L22: 2.5914 REMARK 3 L33: 0.7020 L12: 0.3297 REMARK 3 L13: -0.0410 L23: -0.0830 REMARK 3 S TENSOR REMARK 3 S11: -0.0054 S12: 0.1253 S13: -0.0765 REMARK 3 S21: -0.2115 S22: -0.0151 S23: -0.0995 REMARK 3 S31: 0.0443 S32: 0.0149 S33: 0.0205 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 167 A 187 REMARK 3 ORIGIN FOR THE GROUP (A): 28.0044 -23.0450 -2.2542 REMARK 3 T TENSOR REMARK 3 T11: 0.2668 T22: 0.4102 REMARK 3 T33: 1.2340 T12: -0.0736 REMARK 3 T13: -0.1873 T23: 0.6336 REMARK 3 L TENSOR REMARK 3 L11: 39.8403 L22: 5.2090 REMARK 3 L33: 24.7402 L12: 14.5462 REMARK 3 L13: 29.7031 L23: 11.3866 REMARK 3 S TENSOR REMARK 3 S11: 2.0242 S12: -1.9174 S13: -2.9406 REMARK 3 S21: 0.8410 S22: -0.7926 S23: -1.0427 REMARK 3 S31: 1.5996 S32: -0.9025 S33: -1.2317 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 188 A 216 REMARK 3 ORIGIN FOR THE GROUP (A): 23.2048 -14.7781 -11.1772 REMARK 3 T TENSOR REMARK 3 T11: 0.1709 T22: 0.0926 REMARK 3 T33: 0.2667 T12: 0.0485 REMARK 3 T13: 0.0942 T23: 0.0342 REMARK 3 L TENSOR REMARK 3 L11: 19.1309 L22: 1.8115 REMARK 3 L33: 11.4472 L12: 1.2508 REMARK 3 L13: 13.2935 L23: 0.9335 REMARK 3 S TENSOR REMARK 3 S11: 0.2610 S12: 0.0216 S13: -1.0459 REMARK 3 S21: -0.4566 S22: 0.0550 S23: -0.4663 REMARK 3 S31: -0.0493 S32: -0.0593 S33: -0.3160 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 217 A 416 REMARK 3 ORIGIN FOR THE GROUP (A): 10.3179 -21.6234 11.0805 REMARK 3 T TENSOR REMARK 3 T11: 0.0231 T22: 0.0386 REMARK 3 T33: 0.0428 T12: 0.0005 REMARK 3 T13: -0.0031 T23: -0.0115 REMARK 3 L TENSOR REMARK 3 L11: 0.7034 L22: 1.6662 REMARK 3 L33: 0.5871 L12: 0.2071 REMARK 3 L13: -0.0090 L23: -0.1192 REMARK 3 S TENSOR REMARK 3 S11: 0.0532 S12: -0.0075 S13: -0.0319 REMARK 3 S21: 0.1268 S22: -0.0798 S23: -0.0574 REMARK 3 S31: -0.0065 S32: -0.0118 S33: 0.0266 REMARK 3 REMARK 3 TLS GROUP : 6 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 417 A 423 REMARK 3 ORIGIN FOR THE GROUP (A): 2.6099 -46.3895 -7.1160 REMARK 3 T TENSOR REMARK 3 T11: 0.2785 T22: 0.5048 REMARK 3 T33: 0.4564 T12: -0.0835 REMARK 3 T13: 0.0221 T23: -0.2566 REMARK 3 L TENSOR REMARK 3 L11: 8.1061 L22: 120.5231 REMARK 3 L33: 4.7180 L12: -8.4766 REMARK 3 L13: 7.7557 L23: 15.3127 REMARK 3 S TENSOR REMARK 3 S11: 0.4470 S12: -1.0250 S13: -0.0199 REMARK 3 S21: 0.4703 S22: -0.9769 S23: 1.5395 REMARK 3 S31: 0.2538 S32: -0.9657 S33: 0.5299 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : WITH TLS ADDED REMARK 4 REMARK 4 4L0F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080023. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.978900 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : XSCALE, XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 35636 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.341 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.08000 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 16.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.00 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.36700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.620 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.1.4 REMARK 200 STARTING MODEL: PDB ENTRY 4LOE REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.77 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.35 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M MES, 12% PEG3350, PH 6.5, VAPOR REMARK 280 DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.77500 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -22 REMARK 465 GLY A -21 REMARK 465 SER A -20 REMARK 465 SER A -19 REMARK 465 HIS A -18 REMARK 465 HIS A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 ASP A 184 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 421 O HOH A 1006 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ARG A 39 57.42 -146.21 REMARK 500 ASP A 99 -168.75 -125.90 REMARK 500 VAL A 149 -63.69 -125.32 REMARK 500 SER A 181 -106.35 62.72 REMARK 500 THR A 215 -169.97 -125.91 REMARK 500 THR A 292 65.67 19.91 REMARK 500 LYS A 346 58.66 -90.27 REMARK 500 CYS A 357 112.98 -32.34 REMARK 500 ARG A 422 -114.32 -105.24 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 HEM A 501 FE REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 357 SG REMARK 620 2 HEM A 501 NA 97.8 REMARK 620 3 HEM A 501 NB 83.5 89.7 REMARK 620 4 HEM A 501 NC 86.8 175.4 90.2 REMARK 620 5 HEM A 501 ND 99.7 91.6 176.4 88.2 REMARK 620 6 PGE A 516 O4 170.7 79.4 87.6 96.0 89.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE HEM A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 510 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 511 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 512 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 513 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 514 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 515 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PGE A 516 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L0E RELATED DB: PDB REMARK 900 P450SKY (CYP163B3) WITH N-TERMINAL HEXAHISTIDINE TAG BOUND TO THE REMARK 900 ACTIVE SITE HEME IRON DBREF 4L0F A 1 423 UNP F2YRY7 F2YRY7_9ACTO 1 423 SEQADV 4L0F MET A -22 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F GLY A -21 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F SER A -20 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F SER A -19 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F HIS A -18 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F HIS A -17 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F HIS A -16 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F HIS A -15 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F HIS A -14 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F HIS A -13 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F SER A -12 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F SER A -11 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F GLY A -10 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F LEU A -9 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F VAL A -8 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F PRO A -7 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F ARG A -6 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F GLY A -5 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F SER A -4 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F HIS A -3 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F SER A -2 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F GLY A -1 UNP F2YRY7 EXPRESSION TAG SEQADV 4L0F HIS A 0 UNP F2YRY7 EXPRESSION TAG SEQRES 1 A 446 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 446 LEU VAL PRO ARG GLY SER HIS SER GLY HIS MET THR ALA SEQRES 3 A 446 HIS THR LEU PRO ILE PRO ASP ASP ILE SER THR ILE ASN SEQRES 4 A 446 LEU THR ASP PRO ARG THR TYR GLU VAL ASN ASP LEU SER SEQRES 5 A 446 GLU TYR TRP ARG GLN LEU ARG THR THR ARG PRO LEU TYR SEQRES 6 A 446 TRP HIS PRO PRO VAL GLY ASP ALA PRO GLY PHE TRP VAL SEQRES 7 A 446 VAL SER ARG TYR ALA ASP VAL MET ALA LEU TYR LYS ASP SEQRES 8 A 446 ASN LYS LYS LEU THR SER GLU LYS GLY ASN VAL LEU VAL SEQRES 9 A 446 THR LEU LEU ALA GLY GLY ASP SER ALA ALA GLY LYS MET SEQRES 10 A 446 LEU ALA VAL THR ASP GLY ALA MET HIS ARG GLY LEU ARG SEQRES 11 A 446 ASN VAL LEU LEU LYS SER PHE SER PRO GLN ALA LEU LYS SEQRES 12 A 446 PRO ILE VAL ASP GLN ILE ARG VAL ASN THR THR ARG LEU SEQRES 13 A 446 VAL VAL ASP ALA ALA ARG ARG GLY GLU CYS ASP PHE ALA SEQRES 14 A 446 ALA ASP VAL ALA GLU GLN ILE PRO LEU ASN THR ILE SER SEQRES 15 A 446 ASP LEU LEU GLY VAL PRO ALA ALA ASP ARG GLU PHE LEU SEQRES 16 A 446 LEU LYS LEU ASN LYS SER ALA LEU SER SER GLU ASP ALA SEQRES 17 A 446 ASP GLN SER ALA THR ASP ALA TRP LEU ALA ARG ASN GLU SEQRES 18 A 446 ILE LEU LEU TYR PHE SER GLU LEU VAL ALA GLU ARG ARG SEQRES 19 A 446 ALA LYS PRO THR GLU ASP VAL ILE SER VAL LEU ALA ASN SEQRES 20 A 446 SER MET VAL ASP GLY LYS PRO LEU THR GLU GLU VAL ILE SEQRES 21 A 446 VAL LEU ASN CYS TYR SER LEU ILE LEU GLY GLY ASP GLU SEQRES 22 A 446 THR SER ARG LEU SER MET ILE ASP SER VAL GLN THR PHE SEQRES 23 A 446 THR GLN TYR PRO ASP GLN TRP GLU LEU LEU ARG ASP GLY SEQRES 24 A 446 LYS VAL THR LEU GLU SER ALA THR GLU GLU VAL LEU ARG SEQRES 25 A 446 TRP ALA THR PRO ALA MET HIS PHE GLY ARG ARG ALA VAL SEQRES 26 A 446 THR ASP MET GLU LEU HIS GLY GLN VAL ILE ALA ALA GLY SEQRES 27 A 446 ASP VAL VAL THR LEU TRP ASN ASN SER ALA ASN ARG ASP SEQRES 28 A 446 GLU GLU VAL PHE ALA ASP PRO TYR ALA PHE ASP LEU ASN SEQRES 29 A 446 ARG SER PRO ASN LYS HIS ILE THR PHE GLY TYR GLY PRO SEQRES 30 A 446 HIS PHE CYS LEU GLY ALA TYR LEU GLY ARG ALA GLU VAL SEQRES 31 A 446 HIS ALA LEU LEU ASP ALA LEU ARG THR TYR THR THR GLY SEQRES 32 A 446 PHE GLU ILE THR GLY GLU PRO GLN ARG ILE HIS SER ASN SEQRES 33 A 446 PHE LEU THR GLY LEU SER ARG LEU PRO VAL ARG ILE GLN SEQRES 34 A 446 PRO ASN GLU ALA ALA ILE ALA ALA TYR ASP SER ASP ASN SEQRES 35 A 446 GLY VAL ARG SER HET HEM A 501 43 HET EDO A 502 4 HET EDO A 503 4 HET EDO A 504 4 HET EDO A 505 4 HET EDO A 506 4 HET EDO A 507 4 HET EDO A 508 4 HET EDO A 509 4 HET EDO A 510 4 HET EDO A 511 4 HET EDO A 512 4 HET EDO A 513 4 HET EDO A 514 4 HET EDO A 515 4 HET PGE A 516 17 HETNAM HEM PROTOPORPHYRIN IX CONTAINING FE HETNAM EDO 1,2-ETHANEDIOL HETNAM PGE TRIETHYLENE GLYCOL HETSYN HEM HEME HETSYN EDO ETHYLENE GLYCOL FORMUL 2 HEM C34 H32 FE N4 O4 FORMUL 3 EDO 14(C2 H6 O2) FORMUL 17 PGE C6 H14 O4 FORMUL 18 HOH *418(H2 O) HELIX 1 1 GLY A -1 ALA A 3 5 5 HELIX 2 2 ASP A 11 ILE A 15 5 5 HELIX 3 3 ARG A 21 ASN A 26 1 6 HELIX 4 4 LEU A 28 ARG A 39 1 12 HELIX 5 5 ARG A 58 ASP A 68 1 11 HELIX 6 6 VAL A 79 GLY A 86 1 8 HELIX 7 7 MET A 94 THR A 98 5 5 HELIX 8 8 ASP A 99 LEU A 111 1 13 HELIX 9 9 LYS A 112 PHE A 114 5 3 HELIX 10 10 SER A 115 GLY A 141 1 27 HELIX 11 11 PHE A 145 VAL A 149 1 5 HELIX 12 12 ALA A 150 GLN A 152 5 3 HELIX 13 13 ILE A 153 GLY A 163 1 11 HELIX 14 14 PRO A 165 ALA A 167 5 3 HELIX 15 15 ASP A 168 LEU A 180 1 13 HELIX 16 16 ASP A 186 LYS A 213 1 28 HELIX 17 17 ASP A 217 ASN A 224 1 8 HELIX 18 18 THR A 233 TYR A 266 1 34 HELIX 19 19 TYR A 266 ASP A 275 1 10 HELIX 20 20 THR A 279 THR A 292 1 14 HELIX 21 21 ASN A 322 ASN A 326 1 5 HELIX 22 22 TYR A 352 PHE A 356 5 5 HELIX 23 23 GLY A 359 TYR A 377 1 19 HELIX 24 24 ASN A 408 SER A 417 1 10 SHEET 1 A 2 SER A -12 GLY A -10 0 SHEET 2 A 2 THR A 5 PRO A 7 -1 O LEU A 6 N SER A -11 SHEET 1 B 5 LEU A 41 HIS A 44 0 SHEET 2 B 5 PHE A 53 VAL A 56 -1 O PHE A 53 N HIS A 44 SHEET 3 B 5 VAL A 317 TRP A 321 1 O VAL A 317 N TRP A 54 SHEET 4 B 5 HIS A 296 ALA A 301 -1 N PHE A 297 O LEU A 320 SHEET 5 B 5 LEU A 72 THR A 73 -1 N THR A 73 O ARG A 300 SHEET 1 C 3 GLU A 142 ASP A 144 0 SHEET 2 C 3 PRO A 402 PRO A 407 -1 O VAL A 403 N CYS A 143 SHEET 3 C 3 THR A 378 ILE A 383 -1 N GLY A 380 O GLN A 406 SHEET 1 D 2 MET A 226 VAL A 227 0 SHEET 2 D 2 LYS A 230 PRO A 231 -1 O LYS A 230 N VAL A 227 SHEET 1 E 2 MET A 305 LEU A 307 0 SHEET 2 E 2 GLN A 310 ILE A 312 -1 O ILE A 312 N MET A 305 SHEET 1 F 2 GLN A 388 ARG A 389 0 SHEET 2 F 2 LEU A 398 ARG A 400 -1 O SER A 399 N GLN A 388 LINK SG CYS A 357 FE HEM A 501 1555 1555 2.26 LINK FE HEM A 501 O4 BPGE A 516 1555 1555 2.25 CISPEP 1 SER A 181 SER A 182 0 -6.22 CISPEP 2 SER A 343 PRO A 344 0 -0.37 SITE 1 AC1 26 TYR A 66 ASN A 78 LEU A 95 ALA A 96 SITE 2 AC1 26 HIS A 103 ARG A 107 LEU A 161 SER A 243 SITE 3 AC1 26 LEU A 244 GLY A 247 GLY A 248 THR A 251 SITE 4 AC1 26 SER A 252 SER A 255 PRO A 293 PHE A 297 SITE 5 AC1 26 ARG A 299 THR A 349 PHE A 350 GLY A 351 SITE 6 AC1 26 HIS A 355 CYS A 357 GLY A 359 PGE A 516 SITE 7 AC1 26 HOH A 629 HOH A 630 SITE 1 AC2 7 HIS A -3 PHE A 263 PRO A 267 TRP A 270 SITE 2 AC2 7 GLY A 380 PHE A 381 HOH A 696 SITE 1 AC3 4 ALA A 333 ASP A 339 ARG A 342 HOH A 987 SITE 1 AC4 3 GLU A 329 ALA A 333 HOH A 851 SITE 1 AC5 5 PRO A 121 GLN A 125 ASP A 160 HOH A 741 SITE 2 AC5 5 HOH A 998 SITE 1 AC6 5 THR A 2 ILE A 383 THR A 384 GLY A 385 SITE 2 AC6 5 HOH A 907 SITE 1 AC7 1 HIS A -3 SITE 1 AC8 5 PRO A 9 ASP A 10 ASP A 11 THR A 14 SITE 2 AC8 5 HOH A 788 SITE 1 AC9 2 HIS A -13 ILE A 8 SITE 1 BC1 5 SER A 13 ILE A 15 ASN A 16 PRO A 45 SITE 2 BC1 5 HOH A1003 SITE 1 BC2 3 ARG A 21 VAL A 25 HOH A 859 SITE 1 BC3 2 GLU A 250 HOH A 875 SITE 1 BC4 4 THR A 215 ASP A 217 HOH A 962 HOH A 998 SITE 1 BC5 3 THR A 73 LYS A 76 ALA A 301 SITE 1 BC6 3 THR A 303 ASP A 304 ALA A 314 SITE 1 BC7 9 ASN A 78 ALA A 96 SER A 243 GLY A 247 SITE 2 BC7 9 THR A 251 PHE A 297 HEM A 501 HOH A 805 SITE 3 BC7 9 HOH A 922 CRYST1 48.020 79.550 62.880 90.00 104.53 90.00 P 1 21 1 2 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020825 0.000000 0.005397 0.00000 SCALE2 0.000000 0.012571 0.000000 0.00000 SCALE3 0.000000 0.000000 0.016429 0.00000