HEADER HYDROLASE 31-MAY-13 4L0H OBSLTE 06-AUG-14 4L0H 4TXT TITLE CRYSTAL STRUCTURE OF A GH48 CELLOBIOHYDROLASE FROM TITLE 2 CALDICELLULOSIRUPTOR BESCII COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 48; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1122-1759; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDICELLULOSIRUPTOR BESCII; SOURCE 3 ORGANISM_TAXID: 521460; SOURCE 4 STRAIN: ATCC BAA-1888 / DSM 6725 / Z-1320; SOURCE 5 GENE: ATHE_1867; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS CELLOBIOHYDROLASE, PROCESSIVE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.JIAO,A.BAI,F.YAN,W.GENG REVDAT 3 06-AUG-14 4L0H 1 OBSLTE REVDAT 2 07-MAY-14 4L0H 1 AUTHOR REVDAT 1 30-APR-14 4L0H 0 JRNL AUTH A.JIAO,A.BAI,F.YAN,W.GENG JRNL TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF A JRNL TITL 2 PROCESSIVE CELLOBIOHYDROLASE CBCBH48A FROM JRNL TITL 3 CALDICELLULOSIRUPTOR BESCII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 45728 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.199 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.229 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 2311 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.00 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.05 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2953 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.72 REMARK 3 BIN R VALUE (WORKING SET) : 0.2650 REMARK 3 BIN FREE R VALUE SET COUNT : 157 REMARK 3 BIN FREE R VALUE : 0.3010 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5070 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 88 REMARK 3 SOLVENT ATOMS : 161 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 34.29 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.06000 REMARK 3 B22 (A**2) : 1.36000 REMARK 3 B33 (A**2) : -2.90000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -1.06000 REMARK 3 B23 (A**2) : -0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.197 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.163 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.588 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.945 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5324 ; 0.009 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7224 ; 1.251 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 6.128 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;35.984 ;23.953 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 791 ;16.536 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;15.780 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 699 ; 0.089 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4173 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4L0H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-13. REMARK 100 THE RCSB ID CODE IS RCSB080025. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : HKL REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45729 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.100 REMARK 200 R MERGE (I) : 0.08400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.00 REMARK 200 R MERGE FOR SHELL (I) : 0.61300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.30 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000,0.1 M TRIS-BIS,18% 2- REMARK 280 PROPANOL, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.17400 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.67400 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.17400 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.67400 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 865 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 902 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 VAL A 10 REMARK 465 ASN A 638 REMARK 465 GLN A 639 REMARK 465 SER A 640 REMARK 465 SER A 641 REMARK 465 SER A 642 REMARK 465 VAL A 643 REMARK 465 ASP A 644 REMARK 465 LYS A 645 REMARK 465 LEU A 646 REMARK 465 ALA A 647 REMARK 465 ALA A 648 REMARK 465 ALA A 649 REMARK 465 LEU A 650 REMARK 465 GLU A 651 REMARK 465 HIS A 652 REMARK 465 HIS A 653 REMARK 465 HIS A 654 REMARK 465 HIS A 655 REMARK 465 HIS A 656 REMARK 465 HIS A 657 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 825 O HOH A 869 1545 1.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 VAL A 173 CB - CA - C ANGL. DEV. = -12.8 DEGREES REMARK 500 LEU A 443 CA - CB - CG ANGL. DEV. = 15.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 49 -51.79 -158.05 REMARK 500 ALA A 50 -57.05 -130.55 REMARK 500 LYS A 109 71.80 -150.29 REMARK 500 THR A 181 -74.29 -133.89 REMARK 500 GLN A 183 -10.66 -149.04 REMARK 500 ASN A 331 82.89 -153.53 REMARK 500 VAL A 408 -56.36 76.01 REMARK 500 ASN A 485 59.34 39.80 REMARK 500 PHE A 522 113.75 -39.36 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 305 TYR A 306 147.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CTR A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 702 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 703 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 704 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 705 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 706 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 707 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 708 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 709 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 710 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 711 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BTB A 712 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L0G RELATED DB: PDB DBREF 4L0H A 2 639 UNP B9MKU7 B9MKU7_CALBD 1122 1759 SEQADV 4L0H SER A 640 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H SER A 641 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H SER A 642 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H VAL A 643 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H ASP A 644 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H LYS A 645 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H LEU A 646 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H ALA A 647 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H ALA A 648 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H ALA A 649 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H LEU A 650 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H GLU A 651 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H HIS A 652 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H HIS A 653 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H HIS A 654 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H HIS A 655 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H HIS A 656 UNP B9MKU7 EXPRESSION TAG SEQADV 4L0H HIS A 657 UNP B9MKU7 EXPRESSION TAG SEQRES 1 A 656 PRO THR PRO SER SER THR PRO SER VAL LEU GLY GLU TYR SEQRES 2 A 656 GLY GLN ARG PHE MET TRP LEU TRP ASN LYS ILE HIS ASP SEQRES 3 A 656 PRO ALA ASN GLY TYR PHE ASN GLN ASP GLY ILE PRO TYR SEQRES 4 A 656 HIS SER VAL GLU THR LEU ILE CYS GLU ALA PRO ASP TYR SEQRES 5 A 656 GLY HIS LEU THR THR SER GLU ALA PHE SER TYR TYR VAL SEQRES 6 A 656 TRP LEU GLU ALA VAL TYR GLY LYS LEU THR GLY ASP TRP SEQRES 7 A 656 SER LYS PHE LYS THR ALA TRP ASP THR LEU GLU LYS TYR SEQRES 8 A 656 MET ILE PRO SER ALA GLU ASP GLN PRO MET ARG SER TYR SEQRES 9 A 656 ASP PRO ASN LYS PRO ALA THR TYR ALA GLY GLU TRP GLU SEQRES 10 A 656 THR PRO ASP LYS TYR PRO SER PRO LEU GLU PHE ASN VAL SEQRES 11 A 656 PRO VAL GLY LYS ASP PRO LEU HIS ASN GLU LEU VAL SER SEQRES 12 A 656 THR TYR GLY SER THR LEU MET TYR GLY MET HIS TRP LEU SEQRES 13 A 656 MET ASP VAL ASP ASN TRP TYR GLY TYR GLY LYS ARG GLY SEQRES 14 A 656 ASP GLY VAL SER ARG ALA SER PHE ILE ASN THR PHE GLN SEQRES 15 A 656 ARG GLY PRO GLU GLU SER VAL TRP GLU THR VAL PRO HIS SEQRES 16 A 656 PRO SER TRP GLU GLU PHE LYS TRP GLY GLY PRO ASN GLY SEQRES 17 A 656 PHE LEU ASP LEU PHE ILE LYS ASP GLN ASN TYR SER LYS SEQRES 18 A 656 GLN TRP ARG TYR THR ASP ALA PRO ASP ALA ASP ALA ARG SEQRES 19 A 656 ALA ILE GLN ALA THR TYR TRP ALA LYS VAL TRP ALA LYS SEQRES 20 A 656 GLU GLN GLY LYS PHE ASN GLU ILE SER SER TYR VAL ALA SEQRES 21 A 656 LYS ALA ALA LYS MET GLY ASP TYR LEU ARG TYR ALA MET SEQRES 22 A 656 PHE ASP LYS TYR PHE LYS PRO LEU GLY CYS GLN ASP LYS SEQRES 23 A 656 ASN ALA ALA GLY GLY THR GLY TYR ASP SER ALA HIS TYR SEQRES 24 A 656 LEU LEU SER TRP TYR TYR ALA TRP GLY GLY ALA LEU ASP SEQRES 25 A 656 GLY ALA TRP SER TRP LYS ILE GLY SER SER HIS VAL HIS SEQRES 26 A 656 PHE GLY TYR GLN ASN PRO MET ALA ALA TRP ALA LEU ALA SEQRES 27 A 656 ASN ASP SER ASP MET LYS PRO LYS SER PRO ASN GLY ALA SEQRES 28 A 656 SER ASP TRP ALA LYS SER LEU LYS ARG GLN ILE GLU PHE SEQRES 29 A 656 TYR ARG TRP LEU GLN SER ALA GLU GLY ALA ILE ALA GLY SEQRES 30 A 656 GLY ALA THR ASN SER TRP ASN GLY ARG TYR GLU LYS TYR SEQRES 31 A 656 PRO ALA GLY THR ALA THR PHE TYR GLY MET ALA TYR GLU SEQRES 32 A 656 PRO ASN PRO VAL TYR HIS ASP PRO GLY SER ASN THR TRP SEQRES 33 A 656 PHE GLY PHE GLN ALA TRP SER MET GLN ARG VAL ALA GLU SEQRES 34 A 656 TYR TYR TYR VAL THR GLY ASP LYS ASP ALA GLY ALA LEU SEQRES 35 A 656 LEU GLU LYS TRP VAL SER TRP VAL LYS SER VAL VAL LYS SEQRES 36 A 656 LEU ASN SER ASP GLY THR PHE ALA ILE PRO SER THR LEU SEQRES 37 A 656 ASP TRP SER GLY GLN PRO ASP THR TRP ASN GLY ALA TYR SEQRES 38 A 656 THR GLY ASN SER ASN LEU HIS VAL LYS VAL VAL ASP TYR SEQRES 39 A 656 GLY THR ASP LEU GLY ILE THR ALA SER LEU ALA ASN ALA SEQRES 40 A 656 LEU LEU TYR TYR SER ALA GLY THR LYS LYS TYR GLY VAL SEQRES 41 A 656 PHE ASP GLU GLY ALA LYS ASN LEU ALA LYS GLU LEU LEU SEQRES 42 A 656 ASP ARG MET TRP LYS LEU TYR ARG ASP GLU LYS GLY LEU SEQRES 43 A 656 SER ALA PRO GLU LYS ARG ALA ASP TYR LYS ARG PHE PHE SEQRES 44 A 656 GLU GLN GLU VAL TYR ILE PRO ALA GLY TRP ILE GLY LYS SEQRES 45 A 656 MET PRO ASN GLY ASP VAL ILE LYS SER GLY VAL LYS PHE SEQRES 46 A 656 ILE ASP ILE ARG SER LYS TYR LYS GLN ASP PRO ASP TRP SEQRES 47 A 656 PRO LYS LEU GLU ALA ALA TYR LYS SER GLY GLN ALA PRO SEQRES 48 A 656 GLU PHE ARG TYR HIS ARG PHE TRP ALA GLN CYS ASP ILE SEQRES 49 A 656 ALA ILE ALA ASN ALA THR TYR GLU ILE LEU PHE GLY ASN SEQRES 50 A 656 GLN SER SER SER VAL ASP LYS LEU ALA ALA ALA LEU GLU SEQRES 51 A 656 HIS HIS HIS HIS HIS HIS HET CTR A 701 34 HET EDO A 702 4 HET EDO A 703 4 HET EDO A 704 4 HET EDO A 705 4 HET EDO A 706 4 HET EDO A 707 4 HET EDO A 708 4 HET EDO A 709 4 HET EDO A 710 4 HET EDO A 711 4 HET BTB A 712 14 HETNAM CTR CELLOTRIOSE HETNAM EDO 1,2-ETHANEDIOL HETNAM BTB 2-[BIS-(2-HYDROXY-ETHYL)-AMINO]-2-HYDROXYMETHYL- HETNAM 2 BTB PROPANE-1,3-DIOL HETSYN CTR DEXTRIN HETSYN EDO ETHYLENE GLYCOL HETSYN BTB BIS-TRIS BUFFER FORMUL 2 CTR C18 H32 O16 FORMUL 3 EDO 10(C2 H6 O2) FORMUL 13 BTB C8 H19 N O5 FORMUL 14 HOH *161(H2 O) HELIX 1 1 GLY A 12 ASP A 27 1 16 HELIX 2 2 PRO A 28 GLY A 31 5 4 HELIX 3 3 SER A 59 GLY A 77 1 19 HELIX 4 4 TRP A 79 MET A 93 1 15 HELIX 5 5 THR A 119 TYR A 123 5 5 HELIX 6 6 LEU A 138 GLY A 147 1 10 HELIX 7 7 SER A 189 THR A 193 5 5 HELIX 8 8 PHE A 210 PHE A 214 1 5 HELIX 9 9 ALA A 229 GLY A 251 1 23 HELIX 10 10 LYS A 252 ARG A 271 1 20 HELIX 11 11 TYR A 272 PHE A 275 5 4 HELIX 12 12 GLY A 294 ALA A 298 5 5 HELIX 13 13 GLY A 328 GLN A 330 5 3 HELIX 14 14 ASN A 331 ASP A 341 1 11 HELIX 15 15 ASN A 350 LEU A 369 1 20 HELIX 16 16 SER A 383 ARG A 387 5 5 HELIX 17 17 PHE A 418 GLY A 436 1 19 HELIX 18 18 ASP A 437 VAL A 455 1 19 HELIX 19 19 ASP A 498 GLY A 520 1 23 HELIX 20 20 ASP A 523 TYR A 541 1 19 HELIX 21 21 ALA A 554 TYR A 556 5 3 HELIX 22 22 LYS A 557 GLN A 562 1 6 HELIX 23 23 LYS A 585 ASP A 596 5 12 HELIX 24 24 ASP A 598 SER A 608 1 11 HELIX 25 25 ARG A 618 GLY A 637 1 20 SHEET 1 A 4 LEU A 56 THR A 58 0 SHEET 2 A 4 LEU A 157 ASP A 159 -1 O MET A 158 N THR A 57 SHEET 3 A 4 SER A 177 ASN A 180 -1 O SER A 177 N ASP A 159 SHEET 4 A 4 HIS A 196 PRO A 197 -1 O HIS A 196 N ASN A 180 SHEET 1 B 3 TYR A 113 ALA A 114 0 SHEET 2 B 3 SER A 125 GLU A 128 -1 O GLU A 128 N TYR A 113 SHEET 3 B 3 ILE A 215 LYS A 216 1 O LYS A 216 N LEU A 127 SHEET 1 C 4 TRP A 199 GLU A 200 0 SHEET 2 C 4 GLN A 223 ASP A 228 -1 O GLN A 223 N GLU A 200 SHEET 3 C 4 TYR A 306 ALA A 311 -1 O TYR A 306 N ASP A 228 SHEET 4 C 4 SER A 317 ILE A 320 -1 O ILE A 320 N ALA A 307 SHEET 1 D 4 HIS A 324 HIS A 326 0 SHEET 2 D 4 GLY A 379 THR A 381 -1 O ALA A 380 N VAL A 325 SHEET 3 D 4 MET A 401 GLU A 404 -1 O ALA A 402 N THR A 381 SHEET 4 D 4 THR A 397 PHE A 398 -1 N PHE A 398 O MET A 401 SHEET 1 E 3 LYS A 456 LEU A 457 0 SHEET 2 E 3 PHE A 463 SER A 472 -1 O ALA A 464 N LYS A 456 SHEET 3 E 3 HIS A 489 GLY A 496 -1 O ASP A 494 N SER A 467 SHEET 1 F 2 ARG A 542 ASP A 543 0 SHEET 2 F 2 GLY A 546 LEU A 547 -1 O GLY A 546 N ASP A 543 SHEET 1 G 2 GLU A 551 LYS A 552 0 SHEET 2 G 2 GLU A 613 PHE A 614 -1 O PHE A 614 N GLU A 551 SHEET 1 H 2 GLY A 572 LYS A 573 0 SHEET 2 H 2 VAL A 579 ILE A 580 -1 O ILE A 580 N GLY A 572 CISPEP 1 TYR A 123 PRO A 124 0 7.15 CISPEP 2 ASP A 411 PRO A 412 0 -11.29 SITE 1 AC1 15 HIS A 41 GLU A 49 GLU A 60 TRP A 417 SITE 2 AC1 15 TRP A 423 THR A 497 ASP A 498 GLU A 551 SITE 3 AC1 15 ARG A 618 TRP A 620 EDO A 702 BTB A 712 SITE 4 AC1 15 HOH A 833 HOH A 863 HOH A 961 SITE 1 AC2 3 TRP A 191 ASP A 555 CTR A 701 SITE 1 AC3 6 TRP A 67 TRP A 242 TRP A 246 GLU A 430 SITE 2 AC3 6 TYR A 511 THR A 631 SITE 1 AC4 4 TYR A 295 TYR A 300 ASP A 354 LYS A 357 SITE 1 AC5 2 EDO A 706 HOH A 927 SITE 1 AC6 3 THR A 112 EDO A 705 EDO A 710 SITE 1 AC7 7 THR A 477 ASN A 479 GLY A 480 ALA A 481 SITE 2 AC7 7 THR A 483 EDO A 708 HOH A 834 SITE 1 AC8 2 THR A 477 EDO A 707 SITE 1 AC9 2 ARG A 169 ASP A 171 SITE 1 BC1 2 THR A 112 EDO A 706 SITE 1 BC2 4 ASN A 180 GLN A 183 THR A 227 HOH A 927 SITE 1 BC3 9 ALA A 50 GLU A 60 TRP A 156 ALA A 229 SITE 2 BC3 9 ASP A 231 TYR A 329 CTR A 701 HOH A 835 SITE 3 BC3 9 HOH A 934 CRYST1 116.348 57.348 105.598 90.00 103.36 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008595 0.000000 0.002042 0.00000 SCALE2 0.000000 0.017437 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009733 0.00000