HEADER HYDROLASE 31-MAY-13 4L0K TITLE CRYSTAL STRUCTURE OF A TYPE II RESTRICTION ENDONUCLEASE COMPND MOL_ID: 1; COMPND 2 MOLECULE: DRAIII; COMPND 3 CHAIN: A, B, C, D; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DEINOCOCCUS RADIOPHILUS; SOURCE 3 ORGANISM_TAXID: 32062; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS DRAIII, RESTRICTION ENDONUCLEASE, REASES, STAR ACTIVITY, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR W.ZHUO,J.GE,M.YANG REVDAT 1 14-MAY-14 4L0K 0 JRNL AUTH W.ZHUO,X.LAI,L.ZHANG,S.H.CHAN,F.LI,Z.ZHU,M.YANG,D.SUN JRNL TITL ELIMINATION OF INTER-DOMAIN INTERACTIONS INCREASES THE JRNL TITL 2 CLEAVAGE FIDELITY OF THE RESTRICTION ENDONUCLEASE DRAIII. JRNL REF PROTEIN CELL V. 5 357 2014 JRNL REFN ISSN 1674-800X JRNL PMID 24733184 JRNL DOI 10.1007/S13238-014-0038-Z REMARK 2 REMARK 2 RESOLUTION. 2.33 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.33 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.72 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.370 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 47213 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.243 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.060 REMARK 3 FREE R VALUE TEST SET COUNT : 2389 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.7282 - 5.9763 0.97 2647 139 0.1915 0.2127 REMARK 3 2 5.9763 - 4.7471 0.98 2672 134 0.1829 0.1796 REMARK 3 3 4.7471 - 4.1481 0.99 2634 149 0.1520 0.1971 REMARK 3 4 4.1481 - 3.7693 0.99 2689 129 0.1699 0.2294 REMARK 3 5 3.7693 - 3.4994 0.99 2672 117 0.1763 0.2383 REMARK 3 6 3.4994 - 3.2932 0.99 2645 162 0.1912 0.2308 REMARK 3 7 3.2932 - 3.1284 0.99 2672 154 0.2101 0.2967 REMARK 3 8 3.1284 - 2.9923 0.99 2654 135 0.2058 0.2534 REMARK 3 9 2.9923 - 2.8771 0.99 2650 125 0.2041 0.2765 REMARK 3 10 2.8771 - 2.7779 0.99 2651 133 0.2090 0.2726 REMARK 3 11 2.7779 - 2.6911 0.99 2677 152 0.2246 0.3114 REMARK 3 12 2.6911 - 2.6142 0.99 2620 140 0.2199 0.2859 REMARK 3 13 2.6142 - 2.5454 0.99 2591 155 0.2173 0.2934 REMARK 3 14 2.5454 - 2.4833 0.98 2640 150 0.2232 0.3205 REMARK 3 15 2.4833 - 2.4268 0.98 2601 128 0.2329 0.3195 REMARK 3 16 2.4268 - 2.3752 0.98 2638 145 0.2334 0.3327 REMARK 3 17 2.3752 - 2.3277 0.94 2471 142 0.2442 0.3174 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.330 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.550 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.011 6692 REMARK 3 ANGLE : 1.256 9016 REMARK 3 CHIRALITY : 0.084 1022 REMARK 3 PLANARITY : 0.005 1136 REMARK 3 DIHEDRAL : 17.326 2468 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: all REMARK 3 ORIGIN FOR THE GROUP (A): -13.3695 -12.7761 -46.1502 REMARK 3 T TENSOR REMARK 3 T11: 0.0834 T22: 0.0674 REMARK 3 T33: 0.0695 T12: -0.0088 REMARK 3 T13: -0.0008 T23: -0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.1479 L22: 0.0602 REMARK 3 L33: 0.1179 L12: -0.0081 REMARK 3 L13: -0.0077 L23: -0.0733 REMARK 3 S TENSOR REMARK 3 S11: 0.0503 S12: -0.0329 S13: -0.0264 REMARK 3 S21: -0.0115 S22: -0.0128 S23: 0.0115 REMARK 3 S31: -0.0155 S32: 0.0208 S33: 0.0070 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4L0K COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 03-JUN-13. REMARK 100 THE RCSB ID CODE IS RCSB080028. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 30-APR-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 47240 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.330 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.33 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.41 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 55.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.77 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% 2-PROPANOL, 0.1M TRIS PH 8.0, 5% REMARK 280 PEG8000, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 291K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 59.53150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1920 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22040 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -22.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1890 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 21800 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -21.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 60 REMARK 465 GLY A 61 REMARK 465 ALA A 62 REMARK 465 ALA A 63 REMARK 465 TRP A 64 REMARK 465 LYS A 65 REMARK 465 SER A 66 REMARK 465 SER A 67 REMARK 465 GLN A 68 REMARK 465 ALA A 69 REMARK 465 GLY A 70 REMARK 465 PRO A 71 REMARK 465 ASN A 72 REMARK 465 ARG A 73 REMARK 465 ASN A 172 REMARK 465 ARG A 173 REMARK 465 VAL A 174 REMARK 465 GLY A 175 REMARK 465 LYS A 176 REMARK 465 SER B 10 REMARK 465 ARG B 11 REMARK 465 THR B 12 REMARK 465 ALA B 13 REMARK 465 TYR B 14 REMARK 465 SER B 15 REMARK 465 LYS B 16 REMARK 465 HIS B 17 REMARK 465 PHE B 18 REMARK 465 THR B 60 REMARK 465 GLY B 61 REMARK 465 ALA B 62 REMARK 465 ALA B 63 REMARK 465 TRP B 64 REMARK 465 LYS B 65 REMARK 465 SER B 66 REMARK 465 SER B 67 REMARK 465 GLN B 68 REMARK 465 ALA B 69 REMARK 465 GLY B 70 REMARK 465 PRO B 71 REMARK 465 ASN B 72 REMARK 465 ARG B 73 REMARK 465 GLY B 175 REMARK 465 LYS B 176 REMARK 465 THR C 60 REMARK 465 GLY C 61 REMARK 465 ALA C 62 REMARK 465 ALA C 63 REMARK 465 TRP C 64 REMARK 465 LYS C 65 REMARK 465 SER C 66 REMARK 465 SER C 67 REMARK 465 GLN C 68 REMARK 465 ALA C 69 REMARK 465 GLY C 70 REMARK 465 PRO C 71 REMARK 465 ASN C 72 REMARK 465 ASP C 93 REMARK 465 MET C 94 REMARK 465 GLN C 95 REMARK 465 GLU C 171 REMARK 465 ASN C 172 REMARK 465 ARG C 173 REMARK 465 VAL C 174 REMARK 465 GLY C 175 REMARK 465 LYS C 176 REMARK 465 ALA C 177 REMARK 465 THR D 60 REMARK 465 GLY D 61 REMARK 465 ALA D 62 REMARK 465 ALA D 63 REMARK 465 TRP D 64 REMARK 465 LYS D 65 REMARK 465 SER D 66 REMARK 465 SER D 67 REMARK 465 GLN D 68 REMARK 465 ALA D 69 REMARK 465 GLY D 70 REMARK 465 PRO D 71 REMARK 465 ASN D 72 REMARK 465 ARG D 73 REMARK 465 GLU D 171 REMARK 465 ASN D 172 REMARK 465 ARG D 173 REMARK 465 VAL D 174 REMARK 465 GLY D 175 REMARK 465 LYS D 176 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 16 CG CD CE NZ REMARK 470 LYS A 89 CG CD CE NZ REMARK 470 GLU A 171 CG CD OE1 OE2 REMARK 470 LYS B 89 CG CD CE NZ REMARK 470 GLU B 171 CG CD OE1 OE2 REMARK 470 ASN B 172 CG OD1 ND2 REMARK 470 ARG B 173 CG CD NE CZ NH1 NH2 REMARK 470 VAL B 174 CG1 CG2 REMARK 470 ARG C 73 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 89 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH D 389 O HOH D 394 1.86 REMARK 500 OG1 THR A 165 OD1 ASP A 167 1.87 REMARK 500 O HOH D 352 O HOH D 355 1.96 REMARK 500 O HOH B 303 O HOH B 318 1.98 REMARK 500 O HOH D 362 O HOH D 364 1.98 REMARK 500 O HOH A 323 O HOH A 324 2.00 REMARK 500 O HOH D 355 O HOH D 390 2.01 REMARK 500 N ALA B 177 O HOH B 360 2.02 REMARK 500 O HOH A 369 O HOH A 385 2.03 REMARK 500 O HOH C 362 O HOH C 384 2.04 REMARK 500 O HOH C 312 O HOH C 341 2.05 REMARK 500 OE1 GLU C 218 O HOH C 363 2.08 REMARK 500 O HOH A 383 O HOH A 388 2.08 REMARK 500 NH2 ARG B 223 O HOH B 340 2.08 REMARK 500 NH1 ARG C 120 O HOH C 335 2.08 REMARK 500 O HOH D 336 O HOH D 371 2.10 REMARK 500 O HOH A 320 O HOH A 348 2.11 REMARK 500 O HOH C 364 O HOH C 374 2.11 REMARK 500 OH TYR A 14 O HOH A 322 2.14 REMARK 500 O HOH D 308 O HOH D 360 2.15 REMARK 500 O HOH C 328 O HOH C 363 2.16 REMARK 500 O HOH B 376 O HOH B 381 2.17 REMARK 500 O HOH C 367 O HOH C 386 2.17 REMARK 500 O THR A 12 OG SER A 15 2.18 REMARK 500 NE2 HIS B 28 SG CYS B 32 2.19 REMARK 500 SG CYS D 160 ND1 HIS D 198 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 CYS A 160 CB CYS A 160 SG 0.260 REMARK 500 CYS B 32 CB CYS B 32 SG 0.169 REMARK 500 CYS C 32 CB CYS C 32 SG 0.117 REMARK 500 CYS C 160 CB CYS C 160 SG 0.175 REMARK 500 CYS D 160 CB CYS D 160 SG 0.228 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 4 CA - CB - SG ANGL. DEV. = 7.6 DEGREES REMARK 500 CYS A 22 CA - CB - SG ANGL. DEV. = 8.1 DEGREES REMARK 500 CYS B 4 CA - CB - SG ANGL. DEV. = 8.2 DEGREES REMARK 500 CYS B 22 CA - CB - SG ANGL. DEV. = 8.8 DEGREES REMARK 500 CYS B 32 CB - CA - C ANGL. DEV. = 8.0 DEGREES REMARK 500 CYS C 4 CA - CB - SG ANGL. DEV. = 9.1 DEGREES REMARK 500 CYS C 22 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 CYS D 4 CA - CB - SG ANGL. DEV. = 8.7 DEGREES REMARK 500 CYS D 22 CA - CB - SG ANGL. DEV. = 8.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 HIS A 28 91.91 83.30 REMARK 500 SER A 29 47.16 -93.69 REMARK 500 ILE A 159 -66.62 -90.98 REMARK 500 MET A 226 -74.36 -65.73 REMARK 500 HIS B 5 14.74 56.49 REMARK 500 ASN B 91 59.75 34.33 REMARK 500 ILE B 159 -64.20 -102.72 REMARK 500 LYS B 161 -8.02 73.05 REMARK 500 LYS C 108 50.90 -98.97 REMARK 500 ILE C 159 -63.44 -97.56 REMARK 500 HIS D 5 11.12 45.10 REMARK 500 SER D 29 -82.20 -79.87 REMARK 500 ILE D 159 -65.06 -95.56 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH B 345 DISTANCE = 6.45 ANGSTROMS REMARK 525 HOH B 350 DISTANCE = 6.63 ANGSTROMS REMARK 525 HOH B 388 DISTANCE = 5.39 ANGSTROMS REMARK 525 HOH C 369 DISTANCE = 5.06 ANGSTROMS DBREF 4L0K A 1 227 PDB 4L0K 4L0K 1 227 DBREF 4L0K B 1 227 PDB 4L0K 4L0K 1 227 DBREF 4L0K C 1 227 PDB 4L0K 4L0K 1 227 DBREF 4L0K D 1 227 PDB 4L0K 4L0K 1 227 SEQRES 1 A 227 MET GLU LEU CYS HIS LYS THR VAL LYS SER ARG THR ALA SEQRES 2 A 227 TYR SER LYS HIS PHE PRO HIS LYS CYS GLN LEU PRO LEU SEQRES 3 A 227 GLY HIS SER GLY LYS CYS LEU GLU PHE PRO PHE LEU VAL SEQRES 4 A 227 SER LEU SER LYS THR HIS PRO ARG ILE ALA ALA LYS ILE SEQRES 5 A 227 VAL ARG ASP ALA THR MET THR THR GLY ALA ALA TRP LYS SEQRES 6 A 227 SER SER GLN ALA GLY PRO ASN ARG MET PRO ARG TYR VAL SEQRES 7 A 227 ALA ILE LEU ASP ASP ASP ILE LEU LEU GLU LYS PHE ASN SEQRES 8 A 227 LEU ASP MET GLN SER LEU PRO GLU ILE THR ARG LEU LYS SEQRES 9 A 227 ILE ARG GLU LYS ALA ALA ASP TYR ASP SER CYS ILE ASP SEQRES 10 A 227 VAL ALA ARG LYS LEU THR TRP LEU ALA TYR GLN LEU HIS SEQRES 11 A 227 GLY ALA PRO ILE PRO ASP SER PHE THR LYS ASN TYR LEU SEQRES 12 A 227 GLU GLU PHE PHE GLY PRO MET VAL ALA GLY SER THR ASN SEQRES 13 A 227 CYS GLU ILE CYS LYS LEU PRO LEU THR ILE ASP LEU PHE SEQRES 14 A 227 SER GLU ASN ARG VAL GLY LYS ALA ALA VAL GLU THR ALA SEQRES 15 A 227 HIS LYS THR PRO ARG LEU HIS ASN ALA GLU ASN VAL GLY SEQRES 16 A 227 PHE ALA HIS ARG PHE CYS ASN VAL ALA GLN GLY ASN LYS SEQRES 17 A 227 SER LEU ASP GLU PHE TYR LEU TRP MET GLU GLU VAL LEU SEQRES 18 A 227 THR ARG VAL LYS MET LEU SEQRES 1 B 227 MET GLU LEU CYS HIS LYS THR VAL LYS SER ARG THR ALA SEQRES 2 B 227 TYR SER LYS HIS PHE PRO HIS LYS CYS GLN LEU PRO LEU SEQRES 3 B 227 GLY HIS SER GLY LYS CYS LEU GLU PHE PRO PHE LEU VAL SEQRES 4 B 227 SER LEU SER LYS THR HIS PRO ARG ILE ALA ALA LYS ILE SEQRES 5 B 227 VAL ARG ASP ALA THR MET THR THR GLY ALA ALA TRP LYS SEQRES 6 B 227 SER SER GLN ALA GLY PRO ASN ARG MET PRO ARG TYR VAL SEQRES 7 B 227 ALA ILE LEU ASP ASP ASP ILE LEU LEU GLU LYS PHE ASN SEQRES 8 B 227 LEU ASP MET GLN SER LEU PRO GLU ILE THR ARG LEU LYS SEQRES 9 B 227 ILE ARG GLU LYS ALA ALA ASP TYR ASP SER CYS ILE ASP SEQRES 10 B 227 VAL ALA ARG LYS LEU THR TRP LEU ALA TYR GLN LEU HIS SEQRES 11 B 227 GLY ALA PRO ILE PRO ASP SER PHE THR LYS ASN TYR LEU SEQRES 12 B 227 GLU GLU PHE PHE GLY PRO MET VAL ALA GLY SER THR ASN SEQRES 13 B 227 CYS GLU ILE CYS LYS LEU PRO LEU THR ILE ASP LEU PHE SEQRES 14 B 227 SER GLU ASN ARG VAL GLY LYS ALA ALA VAL GLU THR ALA SEQRES 15 B 227 HIS LYS THR PRO ARG LEU HIS ASN ALA GLU ASN VAL GLY SEQRES 16 B 227 PHE ALA HIS ARG PHE CYS ASN VAL ALA GLN GLY ASN LYS SEQRES 17 B 227 SER LEU ASP GLU PHE TYR LEU TRP MET GLU GLU VAL LEU SEQRES 18 B 227 THR ARG VAL LYS MET LEU SEQRES 1 C 227 MET GLU LEU CYS HIS LYS THR VAL LYS SER ARG THR ALA SEQRES 2 C 227 TYR SER LYS HIS PHE PRO HIS LYS CYS GLN LEU PRO LEU SEQRES 3 C 227 GLY HIS SER GLY LYS CYS LEU GLU PHE PRO PHE LEU VAL SEQRES 4 C 227 SER LEU SER LYS THR HIS PRO ARG ILE ALA ALA LYS ILE SEQRES 5 C 227 VAL ARG ASP ALA THR MET THR THR GLY ALA ALA TRP LYS SEQRES 6 C 227 SER SER GLN ALA GLY PRO ASN ARG MET PRO ARG TYR VAL SEQRES 7 C 227 ALA ILE LEU ASP ASP ASP ILE LEU LEU GLU LYS PHE ASN SEQRES 8 C 227 LEU ASP MET GLN SER LEU PRO GLU ILE THR ARG LEU LYS SEQRES 9 C 227 ILE ARG GLU LYS ALA ALA ASP TYR ASP SER CYS ILE ASP SEQRES 10 C 227 VAL ALA ARG LYS LEU THR TRP LEU ALA TYR GLN LEU HIS SEQRES 11 C 227 GLY ALA PRO ILE PRO ASP SER PHE THR LYS ASN TYR LEU SEQRES 12 C 227 GLU GLU PHE PHE GLY PRO MET VAL ALA GLY SER THR ASN SEQRES 13 C 227 CYS GLU ILE CYS LYS LEU PRO LEU THR ILE ASP LEU PHE SEQRES 14 C 227 SER GLU ASN ARG VAL GLY LYS ALA ALA VAL GLU THR ALA SEQRES 15 C 227 HIS LYS THR PRO ARG LEU HIS ASN ALA GLU ASN VAL GLY SEQRES 16 C 227 PHE ALA HIS ARG PHE CYS ASN VAL ALA GLN GLY ASN LYS SEQRES 17 C 227 SER LEU ASP GLU PHE TYR LEU TRP MET GLU GLU VAL LEU SEQRES 18 C 227 THR ARG VAL LYS MET LEU SEQRES 1 D 227 MET GLU LEU CYS HIS LYS THR VAL LYS SER ARG THR ALA SEQRES 2 D 227 TYR SER LYS HIS PHE PRO HIS LYS CYS GLN LEU PRO LEU SEQRES 3 D 227 GLY HIS SER GLY LYS CYS LEU GLU PHE PRO PHE LEU VAL SEQRES 4 D 227 SER LEU SER LYS THR HIS PRO ARG ILE ALA ALA LYS ILE SEQRES 5 D 227 VAL ARG ASP ALA THR MET THR THR GLY ALA ALA TRP LYS SEQRES 6 D 227 SER SER GLN ALA GLY PRO ASN ARG MET PRO ARG TYR VAL SEQRES 7 D 227 ALA ILE LEU ASP ASP ASP ILE LEU LEU GLU LYS PHE ASN SEQRES 8 D 227 LEU ASP MET GLN SER LEU PRO GLU ILE THR ARG LEU LYS SEQRES 9 D 227 ILE ARG GLU LYS ALA ALA ASP TYR ASP SER CYS ILE ASP SEQRES 10 D 227 VAL ALA ARG LYS LEU THR TRP LEU ALA TYR GLN LEU HIS SEQRES 11 D 227 GLY ALA PRO ILE PRO ASP SER PHE THR LYS ASN TYR LEU SEQRES 12 D 227 GLU GLU PHE PHE GLY PRO MET VAL ALA GLY SER THR ASN SEQRES 13 D 227 CYS GLU ILE CYS LYS LEU PRO LEU THR ILE ASP LEU PHE SEQRES 14 D 227 SER GLU ASN ARG VAL GLY LYS ALA ALA VAL GLU THR ALA SEQRES 15 D 227 HIS LYS THR PRO ARG LEU HIS ASN ALA GLU ASN VAL GLY SEQRES 16 D 227 PHE ALA HIS ARG PHE CYS ASN VAL ALA GLN GLY ASN LYS SEQRES 17 D 227 SER LEU ASP GLU PHE TYR LEU TRP MET GLU GLU VAL LEU SEQRES 18 D 227 THR ARG VAL LYS MET LEU FORMUL 5 HOH *372(H2 O) HELIX 1 1 ALA A 13 HIS A 17 5 5 HELIX 2 2 PHE A 35 PHE A 37 5 3 HELIX 3 3 LEU A 38 HIS A 45 1 8 HELIX 4 4 HIS A 45 MET A 58 1 14 HELIX 5 5 ASP A 82 PHE A 90 1 9 HELIX 6 6 PRO A 98 LYS A 108 1 11 HELIX 7 7 ASP A 111 TYR A 127 1 17 HELIX 8 8 ASP A 136 GLY A 148 1 13 HELIX 9 9 THR A 165 SER A 170 5 6 HELIX 10 10 ARG A 199 GLY A 206 1 8 HELIX 11 11 SER A 209 LEU A 227 1 19 HELIX 12 12 PHE B 35 PHE B 37 5 3 HELIX 13 13 LEU B 38 HIS B 45 1 8 HELIX 14 14 HIS B 45 MET B 58 1 14 HELIX 15 15 PRO B 75 ILE B 80 1 6 HELIX 16 16 ASP B 82 ASN B 91 1 10 HELIX 17 17 ASP B 93 PRO B 98 5 6 HELIX 18 18 GLU B 99 LYS B 104 1 6 HELIX 19 19 ILE B 105 LYS B 108 5 4 HELIX 20 20 ASP B 111 TYR B 127 1 17 HELIX 21 21 ASP B 136 GLY B 148 1 13 HELIX 22 22 THR B 165 SER B 170 5 6 HELIX 23 23 ARG B 199 GLY B 206 1 8 HELIX 24 24 SER B 209 MET B 226 1 18 HELIX 25 25 ALA C 13 HIS C 17 5 5 HELIX 26 26 PHE C 35 PHE C 37 5 3 HELIX 27 27 LEU C 38 HIS C 45 1 8 HELIX 28 28 HIS C 45 MET C 58 1 14 HELIX 29 29 ASP C 82 LYS C 89 1 8 HELIX 30 30 PRO C 98 LYS C 108 1 11 HELIX 31 31 ASP C 111 TYR C 127 1 17 HELIX 32 32 ASP C 136 GLY C 148 1 13 HELIX 33 33 THR C 165 SER C 170 5 6 HELIX 34 34 ARG C 199 GLY C 206 1 8 HELIX 35 35 SER C 209 LEU C 227 1 19 HELIX 36 36 THR D 12 PHE D 18 1 7 HELIX 37 37 PHE D 35 PHE D 37 5 3 HELIX 38 38 LEU D 38 HIS D 45 1 8 HELIX 39 39 HIS D 45 MET D 58 1 14 HELIX 40 40 PRO D 75 ILE D 80 1 6 HELIX 41 41 ASP D 82 ASN D 91 1 10 HELIX 42 42 ASP D 93 LEU D 97 5 5 HELIX 43 43 PRO D 98 LYS D 108 1 11 HELIX 44 44 ASP D 111 TYR D 127 1 17 HELIX 45 45 ASP D 136 GLY D 148 1 13 HELIX 46 46 THR D 165 SER D 170 5 6 HELIX 47 47 ARG D 199 GLY D 206 1 8 HELIX 48 48 SER D 209 LEU D 227 1 19 SHEET 1 A 2 THR A 7 VAL A 8 0 SHEET 1 B 2 VAL A 179 HIS A 183 0 SHEET 2 B 2 VAL A 194 HIS A 198 -1 O ALA A 197 N GLU A 180 SHEET 1 C 2 THR B 7 VAL B 8 0 SHEET 1 D 2 VAL B 179 HIS B 183 0 SHEET 2 D 2 VAL B 194 HIS B 198 -1 O ALA B 197 N GLU B 180 SHEET 1 E 2 THR C 7 VAL C 8 0 SHEET 1 F 2 VAL C 179 HIS C 183 0 SHEET 2 F 2 VAL C 194 HIS C 198 -1 O GLY C 195 N ALA C 182 SHEET 1 G 2 THR D 7 VAL D 8 0 SHEET 1 H 2 VAL D 179 HIS D 183 0 SHEET 2 H 2 VAL D 194 HIS D 198 -1 O ALA D 197 N GLU D 180 SSBOND 1 CYS A 4 CYS A 32 1555 1555 2.04 SSBOND 2 CYS A 4 CYS A 22 1555 1555 2.07 SSBOND 3 CYS A 22 CYS A 32 1555 1555 2.04 SSBOND 4 CYS A 157 CYS A 160 1555 1555 2.05 SSBOND 5 CYS A 160 CYS A 201 1555 1555 2.08 SSBOND 6 CYS B 4 CYS B 32 1555 1555 2.01 SSBOND 7 CYS B 4 CYS B 22 1555 1555 2.19 SSBOND 8 CYS B 22 CYS B 32 1555 1555 1.98 SSBOND 9 CYS B 157 CYS B 160 1555 1555 2.04 SSBOND 10 CYS B 160 CYS B 201 1555 1555 2.06 SSBOND 11 CYS C 4 CYS C 32 1555 1555 1.98 SSBOND 12 CYS C 4 CYS C 22 1555 1555 2.11 SSBOND 13 CYS C 22 CYS C 32 1555 1555 2.00 SSBOND 14 CYS C 157 CYS C 160 1555 1555 2.06 SSBOND 15 CYS C 160 CYS C 201 1555 1555 2.08 SSBOND 16 CYS D 4 CYS D 32 1555 1555 2.01 SSBOND 17 CYS D 4 CYS D 22 1555 1555 2.09 SSBOND 18 CYS D 22 CYS D 32 1555 1555 2.03 SSBOND 19 CYS D 157 CYS D 160 1555 1555 2.05 SSBOND 20 CYS D 160 CYS D 201 1555 1555 2.07 CRYST1 58.397 119.063 82.111 90.00 92.89 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017124 0.000000 0.000864 0.00000 SCALE2 0.000000 0.008399 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012194 0.00000