HEADER ELECTRON TRANSPORT 03-JUN-13 4L1F TITLE ELECTRON TRANSFERRING FLAVOPROTEIN OF ACIDAMINOCOCCUS FERMENTANS: TITLE 2 TOWARDS A MECHANISM OF FLAVIN-BASED ELECTRON BIFURCATION COMPND MOL_ID: 1; COMPND 2 MOLECULE: ACYL-COA DEHYDROGENASE DOMAIN PROTEIN; COMPND 3 CHAIN: A, B SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ACIDAMINOCOCCUS FERMENTANS; SOURCE 3 ORGANISM_TAXID: 591001; SOURCE 4 STRAIN: DSM 20731 KEYWDS FAD, BUTYRYL-COA DEHYDROGENASE, ELECTRON TRANSFERRING FLAVOPROTEIN KEYWDS 2 (ETF), NADH, ELECTRON TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR A.M.MOWAFY,N.P.CHOWDHURY,J.DEMMER,V.UPADHYAY,S.KOLZER,E.JAYAMANI, AUTHOR 2 J.KAHNT,U.DEMMER,U.ERMLER,W.BUCKEL REVDAT 3 28-FEB-24 4L1F 1 REMARK LINK REVDAT 2 12-MAR-14 4L1F 1 JRNL REVDAT 1 15-JAN-14 4L1F 0 JRNL AUTH N.P.CHOWDHURY,A.M.MOWAFY,J.K.DEMMER,V.UPADHYAY,S.KOELZER, JRNL AUTH 2 E.JAYAMANI,J.KAHNT,M.HORNUNG,U.DEMMER,U.ERMLER,W.BUCKEL JRNL TITL STUDIES ON THE MECHANISM OF ELECTRON BIFURCATION CATALYZED JRNL TITL 2 BY ELECTRON TRANSFERRING FLAVOPROTEIN (ETF) AND BUTYRYL-COA JRNL TITL 3 DEHYDROGENASE (BCD) OF ACIDAMINOCOCCUS FERMENTANS. JRNL REF J.BIOL.CHEM. V. 289 5145 2014 JRNL REFN ISSN 0021-9258 JRNL PMID 24379410 JRNL DOI 10.1074/JBC.M113.521013 REMARK 2 REMARK 2 RESOLUTION. 1.79 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.79 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.13 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 88344 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.155 REMARK 3 R VALUE (WORKING SET) : 0.153 REMARK 3 FREE R VALUE : 0.183 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 4666 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.79 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.84 REMARK 3 REFLECTION IN BIN (WORKING SET) : 6011 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.83 REMARK 3 BIN R VALUE (WORKING SET) : 0.2200 REMARK 3 BIN FREE R VALUE SET COUNT : 284 REMARK 3 BIN FREE R VALUE : 0.2520 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5804 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 217 REMARK 3 SOLVENT ATOMS : 616 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 18.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.00000 REMARK 3 B22 (A**2) : 0.00000 REMARK 3 B33 (A**2) : 0.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.092 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.092 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.058 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.813 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.961 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6146 ; 0.022 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5767 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8305 ; 2.132 ; 2.007 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13320 ; 0.977 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 762 ; 5.798 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 256 ;38.088 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 1058 ;13.891 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 24 ;12.866 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 902 ; 0.140 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6872 ; 0.015 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1328 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4L1F COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 07-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080059. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : NULL REMARK 200 PH : 9 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PSI PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 93076 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 47.130 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: SHARP REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.33 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.95 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 1500, 10% (V/V) SPG BUFFER, REMARK 280 25% PROPANDIOL, PH 9, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -X+1/2,Y+1/2,-Z REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 54.55000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 70.70000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 54.55000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 70.70000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TETRAMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 28740 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 46290 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -251.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 218.20000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 10000 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 27510 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -84.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 734 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 381 REMARK 465 LYS A 382 REMARK 465 LYS A 383 REMARK 465 LYS B 381 REMARK 465 LYS B 382 REMARK 465 LYS B 383 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NE2 GLN B 10 O HOH B 621 2.14 REMARK 500 OD1 ASP A 200 O HOH A 561 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 166 CG TYR A 166 CD1 0.088 REMARK 500 SER A 274 CB SER A 274 OG -0.086 REMARK 500 GLU B 75 CD GLU B 75 OE1 -0.068 REMARK 500 SER B 274 CB SER B 274 OG -0.081 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 14 CB - CG - OD1 ANGL. DEV. = 5.9 DEGREES REMARK 500 ARG A 31 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 LYS A 174 CD - CE - NZ ANGL. DEV. = 15.7 DEGREES REMARK 500 ARG A 273 NE - CZ - NH2 ANGL. DEV. = -5.2 DEGREES REMARK 500 ARG A 351 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 TYR A 362 CB - CG - CD1 ANGL. DEV. = 3.7 DEGREES REMARK 500 MET B 171 CG - SD - CE ANGL. DEV. = -10.9 DEGREES REMARK 500 ASP B 325 CB - CG - OD1 ANGL. DEV. = 6.6 DEGREES REMARK 500 ARG B 351 NE - CZ - NH1 ANGL. DEV. = 3.6 DEGREES REMARK 500 TYR B 362 CB - CG - CD2 ANGL. DEV. = -4.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 136 45.68 -85.36 REMARK 500 LYS A 161 -52.46 72.36 REMARK 500 ASP A 173 89.98 -151.69 REMARK 500 ALA B 136 49.22 -81.01 REMARK 500 LYS B 161 -54.44 68.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 126 OG1 REMARK 620 2 GLY A 131 O 125.5 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 TYR A 347 O REMARK 620 2 GLU A 350 OE1 124.0 REMARK 620 N 1 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COS A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FAD B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE COS B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA B 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KPU RELATED DB: PDB REMARK 900 RELATED ID: 4L2I RELATED DB: PDB DBREF 4L1F A 1 383 UNP D2RL84 D2RL84_ACIFV 1 383 DBREF 4L1F B 1 383 UNP D2RL84 D2RL84_ACIFV 1 383 SEQRES 1 A 383 MET ASP PHE ASN LEU THR GLU ASP GLN GLN MET ILE LYS SEQRES 2 A 383 ASP MET ALA ALA GLU PHE ALA GLU LYS PHE LEU ALA PRO SEQRES 3 A 383 THR VAL GLU GLU ARG ASP LYS ALA HIS ILE TRP ASP ARG SEQRES 4 A 383 LYS LEU ILE ASP LYS MET GLY GLU ALA GLY PHE CYS GLY SEQRES 5 A 383 ILE CYS PHE PRO GLU GLU TYR GLY GLY MET GLY LEU ASP SEQRES 6 A 383 VAL LEU SER TYR ILE LEU ALA VAL GLU GLU LEU SER LYS SEQRES 7 A 383 VAL ASP ASP GLY THR GLY ILE THR LEU SER ALA ASN VAL SEQRES 8 A 383 SER LEU CYS ALA THR PRO ILE TYR MET PHE GLY THR GLU SEQRES 9 A 383 GLU GLN LYS GLN LYS TYR LEU ALA PRO ILE ALA GLU GLY SEQRES 10 A 383 THR HIS VAL GLY ALA PHE GLY LEU THR GLU PRO SER ALA SEQRES 11 A 383 GLY THR ASP ALA SER ALA GLN GLN THR THR ALA VAL LEU SEQRES 12 A 383 LYS GLY ASP LYS TYR ILE LEU ASN GLY SER LYS ILE PHE SEQRES 13 A 383 ILE THR ASN GLY LYS GLU ALA ASP THR TYR VAL VAL PHE SEQRES 14 A 383 ALA MET THR ASP LYS SER GLN GLY VAL HIS GLY ILE SER SEQRES 15 A 383 ALA PHE ILE LEU GLU LYS GLY MET PRO GLY PHE ARG PHE SEQRES 16 A 383 GLY LYS ILE GLU ASP LYS MET GLY GLY HIS THR SER ILE SEQRES 17 A 383 THR ALA GLU LEU ILE PHE GLU ASP CYS GLU VAL PRO LYS SEQRES 18 A 383 GLU ASN LEU LEU GLY LYS GLU GLY GLU GLY PHE LYS ILE SEQRES 19 A 383 ALA MET GLU THR LEU ASP GLY GLY ARG ILE GLY VAL ALA SEQRES 20 A 383 ALA GLN ALA LEU GLY ILE ALA GLU GLY ALA LEU ALA ALA SEQRES 21 A 383 ALA VAL LYS TYR SER LYS GLU ARG GLU GLN PHE GLY ARG SEQRES 22 A 383 SER ILE SER LYS PHE GLN ALA LEU GLN PHE MET MET ALA SEQRES 23 A 383 ASP MET ALA THR LYS ILE GLU ALA ALA ARG TYR LEU VAL SEQRES 24 A 383 TYR HIS ALA ALA MET LEU LYS ASN GLU GLY LYS PRO TYR SEQRES 25 A 383 SER GLU ALA ALA ALA MET ALA LYS CYS PHE ALA SER ASP SEQRES 26 A 383 VAL ALA MET GLU VAL THR THR ASP ALA VAL GLN ILE PHE SEQRES 27 A 383 GLY GLY TYR GLY TYR THR VAL ASP TYR PRO ALA GLU ARG SEQRES 28 A 383 TYR MET ARG ASN ALA LYS ILE THR GLN ILE TYR GLU GLY SEQRES 29 A 383 THR ASN GLN VAL MET ARG ILE VAL THR SER ARG ALA LEU SEQRES 30 A 383 LEU ARG ASP LYS LYS LYS SEQRES 1 B 383 MET ASP PHE ASN LEU THR GLU ASP GLN GLN MET ILE LYS SEQRES 2 B 383 ASP MET ALA ALA GLU PHE ALA GLU LYS PHE LEU ALA PRO SEQRES 3 B 383 THR VAL GLU GLU ARG ASP LYS ALA HIS ILE TRP ASP ARG SEQRES 4 B 383 LYS LEU ILE ASP LYS MET GLY GLU ALA GLY PHE CYS GLY SEQRES 5 B 383 ILE CYS PHE PRO GLU GLU TYR GLY GLY MET GLY LEU ASP SEQRES 6 B 383 VAL LEU SER TYR ILE LEU ALA VAL GLU GLU LEU SER LYS SEQRES 7 B 383 VAL ASP ASP GLY THR GLY ILE THR LEU SER ALA ASN VAL SEQRES 8 B 383 SER LEU CYS ALA THR PRO ILE TYR MET PHE GLY THR GLU SEQRES 9 B 383 GLU GLN LYS GLN LYS TYR LEU ALA PRO ILE ALA GLU GLY SEQRES 10 B 383 THR HIS VAL GLY ALA PHE GLY LEU THR GLU PRO SER ALA SEQRES 11 B 383 GLY THR ASP ALA SER ALA GLN GLN THR THR ALA VAL LEU SEQRES 12 B 383 LYS GLY ASP LYS TYR ILE LEU ASN GLY SER LYS ILE PHE SEQRES 13 B 383 ILE THR ASN GLY LYS GLU ALA ASP THR TYR VAL VAL PHE SEQRES 14 B 383 ALA MET THR ASP LYS SER GLN GLY VAL HIS GLY ILE SER SEQRES 15 B 383 ALA PHE ILE LEU GLU LYS GLY MET PRO GLY PHE ARG PHE SEQRES 16 B 383 GLY LYS ILE GLU ASP LYS MET GLY GLY HIS THR SER ILE SEQRES 17 B 383 THR ALA GLU LEU ILE PHE GLU ASP CYS GLU VAL PRO LYS SEQRES 18 B 383 GLU ASN LEU LEU GLY LYS GLU GLY GLU GLY PHE LYS ILE SEQRES 19 B 383 ALA MET GLU THR LEU ASP GLY GLY ARG ILE GLY VAL ALA SEQRES 20 B 383 ALA GLN ALA LEU GLY ILE ALA GLU GLY ALA LEU ALA ALA SEQRES 21 B 383 ALA VAL LYS TYR SER LYS GLU ARG GLU GLN PHE GLY ARG SEQRES 22 B 383 SER ILE SER LYS PHE GLN ALA LEU GLN PHE MET MET ALA SEQRES 23 B 383 ASP MET ALA THR LYS ILE GLU ALA ALA ARG TYR LEU VAL SEQRES 24 B 383 TYR HIS ALA ALA MET LEU LYS ASN GLU GLY LYS PRO TYR SEQRES 25 B 383 SER GLU ALA ALA ALA MET ALA LYS CYS PHE ALA SER ASP SEQRES 26 B 383 VAL ALA MET GLU VAL THR THR ASP ALA VAL GLN ILE PHE SEQRES 27 B 383 GLY GLY TYR GLY TYR THR VAL ASP TYR PRO ALA GLU ARG SEQRES 28 B 383 TYR MET ARG ASN ALA LYS ILE THR GLN ILE TYR GLU GLY SEQRES 29 B 383 THR ASN GLN VAL MET ARG ILE VAL THR SER ARG ALA LEU SEQRES 30 B 383 LEU ARG ASP LYS LYS LYS HET FAD A 401 53 HET COS A 402 49 HET NA A 403 1 HET PDO A 404 5 HET NA A 405 1 HET FAD B 401 53 HET COS B 402 49 HET PO4 B 403 5 HET NA B 404 1 HETNAM FAD FLAVIN-ADENINE DINUCLEOTIDE HETNAM COS COENZYME A PERSULFIDE HETNAM NA SODIUM ION HETNAM PDO 1,3-PROPANDIOL HETNAM PO4 PHOSPHATE ION FORMUL 3 FAD 2(C27 H33 N9 O15 P2) FORMUL 4 COS 2(C21 H36 N7 O16 P3 S2) FORMUL 5 NA 3(NA 1+) FORMUL 6 PDO C3 H8 O2 FORMUL 10 PO4 O4 P 3- FORMUL 12 HOH *616(H2 O) HELIX 1 1 THR A 6 LEU A 24 1 19 HELIX 2 2 THR A 27 HIS A 35 1 9 HELIX 3 3 ASP A 38 GLY A 49 1 12 HELIX 4 4 PHE A 50 ILE A 53 5 4 HELIX 5 5 PRO A 56 GLY A 60 5 5 HELIX 6 6 ASP A 65 LYS A 78 1 14 HELIX 7 7 ASP A 80 LEU A 93 1 14 HELIX 8 8 CYS A 94 GLY A 102 1 9 HELIX 9 9 THR A 103 TYR A 110 1 8 HELIX 10 10 TYR A 110 GLU A 116 1 7 HELIX 11 11 ASP A 173 HIS A 179 5 7 HELIX 12 12 GLU A 230 ARG A 268 1 39 HELIX 13 13 PHE A 278 GLU A 308 1 31 HELIX 14 14 TYR A 312 GLY A 339 1 28 HELIX 15 15 GLY A 340 THR A 344 5 5 HELIX 16 16 PRO A 348 GLN A 360 1 13 HELIX 17 17 THR A 365 ARG A 379 1 15 HELIX 18 18 THR B 6 LEU B 24 1 19 HELIX 19 19 THR B 27 HIS B 35 1 9 HELIX 20 20 ASP B 38 GLY B 49 1 12 HELIX 21 21 PHE B 50 ILE B 53 5 4 HELIX 22 22 PRO B 56 GLY B 60 5 5 HELIX 23 23 ASP B 65 LYS B 78 1 14 HELIX 24 24 ASP B 80 LEU B 93 1 14 HELIX 25 25 CYS B 94 GLY B 102 1 9 HELIX 26 26 THR B 103 GLU B 116 1 14 HELIX 27 27 ASP B 173 HIS B 179 5 7 HELIX 28 28 GLU B 230 ARG B 268 1 39 HELIX 29 29 PHE B 278 GLY B 309 1 32 HELIX 30 30 TYR B 312 GLY B 339 1 28 HELIX 31 31 GLY B 340 THR B 344 5 5 HELIX 32 32 PRO B 348 GLN B 360 1 13 HELIX 33 33 THR B 365 ARG B 379 1 15 SHEET 1 A 4 GLY A 121 GLY A 124 0 SHEET 2 A 4 THR A 165 MET A 171 1 O VAL A 167 N GLY A 124 SHEET 3 A 4 ILE A 181 GLU A 187 -1 O LEU A 186 N TYR A 166 SHEET 4 A 4 LEU A 224 LEU A 225 -1 O LEU A 225 N ALA A 183 SHEET 1 B 4 THR A 140 LYS A 144 0 SHEET 2 B 4 LYS A 147 THR A 158 -1 O LYS A 147 N LYS A 144 SHEET 3 B 4 THR A 209 PRO A 220 -1 O VAL A 219 N TYR A 148 SHEET 4 B 4 PHE A 193 ILE A 198 -1 N ARG A 194 O ILE A 213 SHEET 1 C 2 GLU A 269 GLN A 270 0 SHEET 2 C 2 ARG A 273 SER A 274 -1 O ARG A 273 N GLN A 270 SHEET 1 D 4 GLY B 121 GLY B 124 0 SHEET 2 D 4 THR B 165 MET B 171 1 O VAL B 167 N GLY B 124 SHEET 3 D 4 ILE B 181 GLU B 187 -1 O SER B 182 N ALA B 170 SHEET 4 D 4 LEU B 224 LEU B 225 -1 O LEU B 225 N ALA B 183 SHEET 1 E 4 THR B 140 LYS B 144 0 SHEET 2 E 4 LYS B 147 THR B 158 -1 O LYS B 147 N LYS B 144 SHEET 3 E 4 THR B 209 PRO B 220 -1 O VAL B 219 N TYR B 148 SHEET 4 E 4 PHE B 193 ILE B 198 -1 N LYS B 197 O GLU B 211 SHEET 1 F 2 GLU B 269 GLN B 270 0 SHEET 2 F 2 ARG B 273 SER B 274 -1 O ARG B 273 N GLN B 270 LINK OG1 THR A 126 NA NA A 403 1555 1555 2.83 LINK O GLY A 131 NA NA A 403 1555 1555 2.78 LINK O TYR A 347 NA NA A 405 1555 1555 2.64 LINK OE1 GLU A 350 NA NA A 405 1555 1555 2.81 SITE 1 AC1 29 PHE A 123 LEU A 125 THR A 126 GLY A 131 SITE 2 AC1 29 THR A 132 PHE A 156 ILE A 157 THR A 158 SITE 3 AC1 29 ILE A 358 TYR A 362 THR A 365 GLN A 367 SITE 4 AC1 29 COS A 402 HOH A 501 HOH A 509 HOH A 514 SITE 5 AC1 29 ARG B 268 GLN B 270 PHE B 271 ILE B 275 SITE 6 AC1 29 PHE B 278 GLN B 279 LEU B 281 GLN B 336 SITE 7 AC1 29 ILE B 337 GLY B 340 TYR B 341 HOH B 582 SITE 8 AC1 29 HOH B 800 SITE 1 AC2 18 THR A 132 HIS A 179 PHE A 232 MET A 236 SITE 2 AC2 18 GLU A 237 LEU A 239 ASP A 240 ARG A 243 SITE 3 AC2 18 GLU A 363 GLY A 364 ARG A 375 FAD A 401 SITE 4 AC2 18 NA A 403 HOH A 550 HOH A 579 HOH A 661 SITE 5 AC2 18 HOH A 669 HOH A 800 SITE 1 AC3 3 THR A 126 GLY A 131 COS A 402 SITE 1 AC4 2 LEU A 5 GLN A 10 SITE 1 AC5 4 TYR A 347 PRO A 348 GLU A 350 ARG A 351 SITE 1 AC6 29 ARG A 268 GLN A 270 PHE A 271 ILE A 275 SITE 2 AC6 29 PHE A 278 GLN A 279 LEU A 281 GLN A 336 SITE 3 AC6 29 ILE A 337 GLY A 340 TYR A 341 HOH A 519 SITE 4 AC6 29 PHE B 123 LEU B 125 THR B 126 GLY B 131 SITE 5 AC6 29 THR B 132 PHE B 156 ILE B 157 THR B 158 SITE 6 AC6 29 ILE B 358 TYR B 362 THR B 365 GLN B 367 SITE 7 AC6 29 COS B 402 HOH B 503 HOH B 508 HOH B 671 SITE 8 AC6 29 HOH B 799 SITE 1 AC7 19 THR B 132 HIS B 179 PHE B 232 MET B 236 SITE 2 AC7 19 LEU B 239 ASP B 240 ARG B 243 SER B 313 SITE 3 AC7 19 GLU B 363 GLY B 364 VAL B 368 ARG B 375 SITE 4 AC7 19 FAD B 401 HOH B 529 HOH B 538 HOH B 553 SITE 5 AC7 19 HOH B 625 HOH B 645 HOH B 728 SITE 1 AC8 3 LYS B 291 PHE B 322 GLU B 329 SITE 1 AC9 2 HIS A 301 HOH A 811 CRYST1 109.100 141.400 64.100 90.00 90.00 90.00 P 21 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009166 0.000000 0.000000 0.00000 SCALE2 0.000000 0.007072 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015601 0.00000