HEADER HYDROLASE 03-JUN-13 4L1J TITLE THREE DIMENSIONAL STRUCTURE OF MUTANT D143A OF HUMAN HD DOMAIN- TITLE 2 CONTAINING PROTEIN 2, NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) TITLE 3 TARGET HR6723 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HD DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEPATITIS C VIRUS NS5A-TRANSACTIVATED PROTEIN 2, HCV NS5A- COMPND 5 TRANSACTIVATED PROTEIN 2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: HD DOMAIN-CONTAINING PROTEIN 2 (PHOSPHORYLATE); COMPND 10 CHAIN: B; COMPND 11 ENGINEERED: YES; COMPND 12 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET15_NESG; SOURCE 10 MOL_ID: 2; SOURCE 11 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 12 ORGANISM_COMMON: HUMAN; SOURCE 13 ORGANISM_TAXID: 9606; SOURCE 14 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 15 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 16 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 17 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 18 EXPRESSION_SYSTEM_PLASMID: PET15_NESG KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, HDCC2, HEPATITIS C KEYWDS 3 VIRUS NS5A-TRANSACTIVATED PROTEIN 2, NS5ATP2, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.KUZIN,M.SU,A.YAKUNIN,O.BELOGLAZOVA,J.SEETHARAMAN,M.MAGLAQUI,R.XIAO, AUTHOR 2 D.LEE,G.BROWN,R.FLICK,J.K.EVERETT,T.B.ACTON,G.T.MONTELIONE,J.F.HUNT, AUTHOR 3 L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 4 06-DEC-23 4L1J 1 REMARK REVDAT 3 20-SEP-23 4L1J 1 REMARK LINK REVDAT 2 25-DEC-13 4L1J 1 TITLE REVDAT 1 19-JUN-13 4L1J 0 JRNL AUTH A.KUZIN,M.SU,A.YAKUNIN,O.BELOGLAZOVA,J.SEETHARAMAN, JRNL AUTH 2 M.MAGLAQUI,R.XIAO,D.LEE,G.BROWN,R.FLICK,J.K.EVERETT, JRNL AUTH 3 T.B.ACTON,G.T.MONTELIONE,J.F.HUNT,L.TONG JRNL TITL THREE DIMENSIONAL STRUCTURE OF MUTANT D143A OF HUMAN HD JRNL TITL 2 DOMAIN-CONTAINING PROTEIN 2, NORTHEAST STRUCTURAL GENOMICS JRNL TITL 3 CONSORTIUM (NESG) TARGET HR6723 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.82 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1269 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.82 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.38 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.440 REMARK 3 COMPLETENESS FOR RANGE (%) : 96.3 REMARK 3 NUMBER OF REFLECTIONS : 42001 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.177 REMARK 3 R VALUE (WORKING SET) : 0.176 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.760 REMARK 3 FREE R VALUE TEST SET COUNT : 1998 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.3898 - 4.3945 1.00 3164 156 0.1783 0.2097 REMARK 3 2 4.3945 - 3.4890 1.00 3037 147 0.1596 0.1661 REMARK 3 3 3.4890 - 3.0482 1.00 2991 153 0.1889 0.1974 REMARK 3 4 3.0482 - 2.7697 1.00 2986 150 0.1910 0.2389 REMARK 3 5 2.7697 - 2.5712 1.00 2956 150 0.1722 0.2006 REMARK 3 6 2.5712 - 2.4197 1.00 2943 149 0.1697 0.2053 REMARK 3 7 2.4197 - 2.2985 1.00 2939 149 0.1619 0.2132 REMARK 3 8 2.2985 - 2.1985 1.00 2971 151 0.1557 0.1865 REMARK 3 9 2.1985 - 2.1138 1.00 2913 136 0.1553 0.1833 REMARK 3 10 2.1138 - 2.0409 1.00 2939 142 0.1686 0.2121 REMARK 3 11 2.0409 - 1.9771 0.98 2880 150 0.1721 0.2076 REMARK 3 12 1.9771 - 1.9206 0.93 2708 155 0.1974 0.2159 REMARK 3 13 1.9206 - 1.8700 0.85 2499 109 0.2250 0.2533 REMARK 3 14 1.8700 - 1.8244 0.71 2077 101 0.2620 0.2710 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.160 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.990 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 26.70 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.44 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3242 REMARK 3 ANGLE : 1.047 4353 REMARK 3 CHIRALITY : 0.070 466 REMARK 3 PLANARITY : 0.004 572 REMARK 3 DIHEDRAL : 14.763 1280 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -20.0480 -12.9506 15.7411 REMARK 3 T TENSOR REMARK 3 T11: 0.1495 T22: 0.1557 REMARK 3 T33: 0.1341 T12: -0.0469 REMARK 3 T13: 0.0215 T23: -0.0257 REMARK 3 L TENSOR REMARK 3 L11: 1.5680 L22: 1.1874 REMARK 3 L33: 1.5908 L12: -0.3879 REMARK 3 L13: -0.1272 L23: 0.0094 REMARK 3 S TENSOR REMARK 3 S11: 0.0089 S12: -0.0379 S13: 0.0555 REMARK 3 S21: 0.0799 S22: -0.0573 S23: -0.0174 REMARK 3 S31: -0.0173 S32: 0.1739 S33: 0.0485 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4L1J COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080063. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4C REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MAR CCD 165 MM REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42001 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.820 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 93.6 REMARK 200 DATA REDUNDANCY : 5.700 REMARK 200 R MERGE (I) : 0.05100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 47.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 4DMB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 51.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.53 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 100MM NACL, 5MM DTT, REMARK 280 0.02% NAN3, 10MM TRIS-HCL (PH 7.5) . RESERVOIR SOLUTION:NA2H2PO4 REMARK 280 0.1M, MES 0.1M, PEG400 40%, MICROBATCH UNDER OIL, TEMPERATURE REMARK 280 277K, PH 6 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.49550 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.88900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 34.96450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 52.88900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.49550 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 34.96450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER,61.27 KD,68.3% REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5450 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18340 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -12.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 PHE A 9 REMARK 465 SER A 10 REMARK 465 GLY A 11 REMARK 465 HIS A 12 REMARK 465 GLU A 201 REMARK 465 PRO A 202 REMARK 465 HIS A 203 REMARK 465 SER A 204 REMARK 465 MSE B 1 REMARK 465 ALA B 2 REMARK 465 SER B 3 REMARK 465 VAL B 4 REMARK 465 SER B 5 REMARK 465 GLU B 201 REMARK 465 PRO B 202 REMARK 465 HIS B 203 REMARK 465 SER B 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O ILE A 60 NZ LYS A 67 2.10 REMARK 500 NH1 ARG B 29 O HOH B 463 2.15 REMARK 500 NH1 ARG B 72 OE1 GLU B 120 2.17 REMARK 500 NH1 ARG A 29 O HOH A 505 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 176 -10.38 -141.57 REMARK 500 ALA B 7 -89.27 -93.03 REMARK 500 ASN B 176 -15.88 -141.66 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 PEG B 302 REMARK 610 PE4 B 304 REMARK 615 REMARK 615 ZERO OCCUPANCY ATOM REMARK 615 THE FOLLOWING RESIDUES HAVE ATOMS MODELED WITH ZERO REMARK 615 OCCUPANCY. THE LOCATION AND PROPERTIES OF THESE ATOMS REMARK 615 MAY NOT BE RELIABLE. (M=MODEL NUMBER; RES=RESIDUE NAME; REMARK 615 C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 615 M RES C SSEQI REMARK 615 HOH A 514 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PEG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PE4 B 304 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DMB RELATED DB: PDB REMARK 900 99.5% IDENTITY REMARK 900 RELATED ID: NESG-HR6723 RELATED DB: TARGETTRACK DBREF 4L1J A 1 204 UNP Q7Z4H3 HDDC2_HUMAN 1 204 DBREF 4L1J B 1 204 UNP Q7Z4H3 HDDC2_HUMAN 1 204 SEQADV 4L1J ALA A 143 UNP Q7Z4H3 ASP 143 ENGINEERED MUTATION SEQADV 4L1J ALA B 143 UNP Q7Z4H3 ASP 143 ENGINEERED MUTATION SEQRES 1 A 204 MSE ALA SER VAL SER SER ALA THR PHE SER GLY HIS GLY SEQRES 2 A 204 ALA ARG SER LEU LEU GLN PHE LEU ARG LEU VAL GLY GLN SEQRES 3 A 204 LEU LYS ARG VAL PRO ARG THR GLY TRP VAL TYR ARG ASN SEQRES 4 A 204 VAL GLN ARG PRO GLU SER VAL SER ASP HIS MSE TYR ARG SEQRES 5 A 204 MSE ALA VAL MSE ALA MSE VAL ILE LYS ASP ASP ARG LEU SEQRES 6 A 204 ASN LYS ASP ARG CYS VAL ARG LEU ALA LEU VAL HIS ASP SEQRES 7 A 204 MSE ALA GLU CYS ILE VAL GLY ASP ILE ALA PRO ALA ASP SEQRES 8 A 204 ASN ILE PRO LYS GLU GLU LYS HIS ARG ARG GLU GLU GLU SEQRES 9 A 204 ALA MSE LYS GLN ILE THR GLN LEU LEU PRO GLU ASP LEU SEQRES 10 A 204 ARG LYS GLU LEU TYR GLU LEU TRP GLU GLU TYR GLU THR SEQRES 11 A 204 GLN SER SER ALA GLU ALA LYS PHE VAL LYS GLN LEU ALA SEQRES 12 A 204 GLN CYS GLU MSE ILE LEU GLN ALA SER GLU TYR GLU ASP SEQRES 13 A 204 LEU GLU HIS LYS PRO GLY ARG LEU GLN ASP PHE TYR ASP SEQRES 14 A 204 SER THR ALA GLY LYS PHE ASN HIS PRO GLU ILE VAL GLN SEQRES 15 A 204 LEU VAL SER GLU LEU GLU ALA GLU ARG SER THR ASN ILE SEQRES 16 A 204 ALA ALA ALA ALA SER GLU PRO HIS SER SEQRES 1 B 204 MSE ALA SER VAL SER SER ALA THR PHE SEP GLY HIS GLY SEQRES 2 B 204 ALA ARG SER LEU LEU GLN PHE LEU ARG LEU VAL GLY GLN SEQRES 3 B 204 LEU LYS ARG VAL PRO ARG THR GLY TRP VAL TYR ARG ASN SEQRES 4 B 204 VAL GLN ARG PRO GLU SER VAL SER ASP HIS MSE TYR ARG SEQRES 5 B 204 MSE ALA VAL MSE ALA MSE VAL ILE LYS ASP ASP ARG LEU SEQRES 6 B 204 ASN LYS ASP ARG CYS VAL ARG LEU ALA LEU VAL HIS ASP SEQRES 7 B 204 MSE ALA GLU CYS ILE VAL GLY ASP ILE ALA PRO ALA ASP SEQRES 8 B 204 ASN ILE PRO LYS GLU GLU LYS HIS ARG ARG GLU GLU GLU SEQRES 9 B 204 ALA MSE LYS GLN ILE THR GLN LEU LEU PRO GLU ASP LEU SEQRES 10 B 204 ARG LYS GLU LEU TYR GLU LEU TRP GLU GLU TYR GLU THR SEQRES 11 B 204 GLN SER SER ALA GLU ALA LYS PHE VAL LYS GLN LEU ALA SEQRES 12 B 204 GLN CYS GLU MSE ILE LEU GLN ALA SER GLU TYR GLU ASP SEQRES 13 B 204 LEU GLU HIS LYS PRO GLY ARG LEU GLN ASP PHE TYR ASP SEQRES 14 B 204 SER THR ALA GLY LYS PHE ASN HIS PRO GLU ILE VAL GLN SEQRES 15 B 204 LEU VAL SER GLU LEU GLU ALA GLU ARG SER THR ASN ILE SEQRES 16 B 204 ALA ALA ALA ALA SER GLU PRO HIS SER MODRES 4L1J MSE A 50 MET SELENOMETHIONINE MODRES 4L1J MSE A 53 MET SELENOMETHIONINE MODRES 4L1J MSE A 56 MET SELENOMETHIONINE MODRES 4L1J MSE A 58 MET SELENOMETHIONINE MODRES 4L1J MSE A 79 MET SELENOMETHIONINE MODRES 4L1J MSE A 106 MET SELENOMETHIONINE MODRES 4L1J MSE A 147 MET SELENOMETHIONINE MODRES 4L1J SEP B 10 SER PHOSPHOSERINE MODRES 4L1J MSE B 50 MET SELENOMETHIONINE MODRES 4L1J MSE B 53 MET SELENOMETHIONINE MODRES 4L1J MSE B 56 MET SELENOMETHIONINE MODRES 4L1J MSE B 58 MET SELENOMETHIONINE MODRES 4L1J MSE B 79 MET SELENOMETHIONINE MODRES 4L1J MSE B 106 MET SELENOMETHIONINE MODRES 4L1J MSE B 147 MET SELENOMETHIONINE HET MSE A 50 8 HET MSE A 53 8 HET MSE A 56 8 HET MSE A 58 8 HET MSE A 79 8 HET MSE A 106 8 HET MSE A 147 8 HET SEP B 10 10 HET MSE B 50 8 HET MSE B 53 8 HET MSE B 56 8 HET MSE B 58 8 HET MSE B 79 8 HET MSE B 106 8 HET MSE B 147 8 HET PEG A 301 7 HET PEG A 302 7 HET PEG A 303 7 HET PEG B 301 7 HET PEG B 302 4 HET PEG B 303 7 HET PE4 B 304 13 HETNAM MSE SELENOMETHIONINE HETNAM SEP PHOSPHOSERINE HETNAM PEG DI(HYDROXYETHYL)ETHER HETNAM PE4 2-{2-[2-(2-{2-[2-(2-ETHOXY-ETHOXY)-ETHOXY]-ETHOXY}- HETNAM 2 PE4 ETHOXY)-ETHOXY]-ETHOXY}-ETHANOL HETSYN SEP PHOSPHONOSERINE HETSYN PE4 POLYETHYLENE GLYCOL PEG4000 FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 2 SEP C3 H8 N O6 P FORMUL 3 PEG 6(C4 H10 O3) FORMUL 9 PE4 C16 H34 O8 FORMUL 10 HOH *246(H2 O) HELIX 1 1 GLY A 13 GLN A 26 1 14 HELIX 2 2 LEU A 27 VAL A 30 5 4 HELIX 3 3 ARG A 32 TYR A 37 1 6 HELIX 4 4 SER A 45 ILE A 60 1 16 HELIX 5 5 ASN A 66 HIS A 77 1 12 HELIX 6 6 ALA A 80 GLY A 85 1 6 HELIX 7 7 ALA A 88 ASN A 92 5 5 HELIX 8 8 PRO A 94 GLN A 111 1 18 HELIX 9 9 PRO A 114 GLN A 131 1 18 HELIX 10 10 SER A 133 HIS A 159 1 27 HELIX 11 11 LEU A 164 ALA A 172 1 9 HELIX 12 12 HIS A 177 SER A 200 1 24 HELIX 13 13 GLY B 13 LEU B 27 1 15 HELIX 14 14 LYS B 28 VAL B 30 5 3 HELIX 15 15 ARG B 32 TYR B 37 1 6 HELIX 16 16 SER B 45 ILE B 60 1 16 HELIX 17 17 ASN B 66 HIS B 77 1 12 HELIX 18 18 ALA B 80 GLY B 85 1 6 HELIX 19 19 ALA B 88 ASN B 92 5 5 HELIX 20 20 PRO B 94 GLN B 111 1 18 HELIX 21 21 PRO B 114 THR B 130 1 17 HELIX 22 22 SER B 133 HIS B 159 1 27 HELIX 23 23 LEU B 164 THR B 171 1 8 HELIX 24 24 HIS B 177 ALA B 199 1 23 LINK C HIS A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N TYR A 51 1555 1555 1.34 LINK C ARG A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N ALA A 54 1555 1555 1.33 LINK C VAL A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ALA A 57 1555 1555 1.34 LINK C ALA A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N VAL A 59 1555 1555 1.33 LINK C ASP A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N ALA A 80 1555 1555 1.33 LINK C ALA A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N LYS A 107 1555 1555 1.33 LINK C GLU A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N ILE A 148 1555 1555 1.33 LINK C PHE B 9 N SEP B 10 1555 1555 1.33 LINK C SEP B 10 N GLY B 11 1555 1555 1.33 LINK C HIS B 49 N MSE B 50 1555 1555 1.33 LINK C MSE B 50 N TYR B 51 1555 1555 1.34 LINK C ARG B 52 N MSE B 53 1555 1555 1.33 LINK C MSE B 53 N ALA B 54 1555 1555 1.33 LINK C VAL B 55 N MSE B 56 1555 1555 1.33 LINK C MSE B 56 N ALA B 57 1555 1555 1.33 LINK C ALA B 57 N MSE B 58 1555 1555 1.33 LINK C MSE B 58 N VAL B 59 1555 1555 1.33 LINK C ASP B 78 N MSE B 79 1555 1555 1.33 LINK C MSE B 79 N ALA B 80 1555 1555 1.33 LINK C ALA B 105 N MSE B 106 1555 1555 1.33 LINK C MSE B 106 N LYS B 107 1555 1555 1.33 LINK C GLU B 146 N MSE B 147 1555 1555 1.33 LINK C MSE B 147 N ILE B 148 1555 1555 1.33 SITE 1 AC1 4 ASN A 39 GLU A 158 LYS A 160 ARG A 163 SITE 1 AC2 4 ARG A 29 CYS A 82 ILE A 83 GLY A 85 SITE 1 AC3 4 MSE A 147 HOH A 421 HOH A 527 PEG B 301 SITE 1 AC4 5 PEG A 303 ASN B 39 GLU B 158 LYS B 160 SITE 2 AC4 5 ARG B 163 SITE 1 AC5 6 ASP A 68 ASP B 68 ARG B 69 ARG B 72 SITE 2 AC5 6 GLU B 120 HOH B 459 SITE 1 AC6 2 ARG B 29 CYS B 82 SITE 1 AC7 9 ASN A 39 ARG B 32 GLY B 34 TRP B 35 SITE 2 AC7 9 MSE B 147 PHE B 167 SER B 170 HOH B 430 SITE 3 AC7 9 HOH B 517 CRYST1 64.991 69.929 105.778 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015387 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014300 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009454 0.00000