HEADER OXIDOREDUCTASE 03-JUN-13 4L1W TITLE CRYSTAL STRUCTUER OF HUMAN 3-ALPHA HYDROXYSTEROID DEHYDROGENASE TYPE 3 TITLE 2 IN COMPLEX WITH NADP+ AND PROGESTERONE COMPND MOL_ID: 1; COMPND 2 MOLECULE: ALDO-KETO REDUCTASE FAMILY 1 MEMBER C2; COMPND 3 CHAIN: A, B; COMPND 4 SYNONYM: 3-ALPHA-HSD3, CHLORDECONE REDUCTASE HOMOLOG HAKRD, COMPND 5 DIHYDRODIOL DEHYDROGENASE 2, DD-2, DD2, DIHYDRODIOL COMPND 6 DEHYDROGENASE/BILE ACID-BINDING PROTEIN, DD/BABP, TRANS-1,2- COMPND 7 DIHYDROBENZENE-1,2-DIOL DEHYDROGENASE, TYPE III 3-ALPHA- COMPND 8 HYDROXYSTEROID DEHYDROGENASE; COMPND 9 EC: 1.3.1.20, 1.1.1.213; COMPND 10 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: AKR1C2; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS ALPHA-BETA BARREL, HUMAN 3-ALPHA HSD3, AKR, AKR1C2, OXIDOREDUCTASE, KEYWDS 2 ALDO-KETO REDUCTASE, NADPH EXPDTA X-RAY DIFFRACTION AUTHOR B.ZHANG,X.-J.HU,S.-X.LIN REVDAT 2 08-NOV-23 4L1W 1 REMARK SEQADV REVDAT 1 16-APR-14 4L1W 0 JRNL AUTH B.ZHANG,D.-W.ZHU,X.-J.HU,M.ZHOU,P.SHANG,S.-X.LIN JRNL TITL HUMAN 3-ALPHA HYDROXYSTEROID DEHYDROGENASE TYPE 3 (3 JRNL TITL 2 ALPHA-HSD3): THE V54L MUTATION RESTRICTING THE STEROID JRNL TITL 3 ALTERNATIVE BINDING AND ENHANCING THE 20 ALPHA-HSD ACTIVITY JRNL REF J.STEROID BIOCHEM.MOL.BIOL. V. 141 135 2014 JRNL REFN ISSN 0960-0760 JRNL PMID 24434280 JRNL DOI 10.1016/J.JSBMB.2014.01.003 REMARK 2 REMARK 2 RESOLUTION. 2.20 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0029 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.20 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 21.35 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 3 NUMBER OF REFLECTIONS : 30919 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.148 REMARK 3 R VALUE (WORKING SET) : 0.146 REMARK 3 FREE R VALUE : 0.194 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1640 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.20 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.26 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2213 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.78 REMARK 3 BIN R VALUE (WORKING SET) : 0.1550 REMARK 3 BIN FREE R VALUE SET COUNT : 125 REMARK 3 BIN FREE R VALUE : 0.2070 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5204 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 152 REMARK 3 SOLVENT ATOMS : 369 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 11.74 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.39000 REMARK 3 B22 (A**2) : -0.35000 REMARK 3 B33 (A**2) : 0.21000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.98000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.282 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.189 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.111 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 4.264 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.955 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.921 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5521 ; 0.017 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5276 ; 0.006 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7520 ; 1.902 ; 2.006 REMARK 3 BOND ANGLES OTHERS (DEGREES): 12180 ; 1.205 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 654 ; 5.832 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 252 ;38.476 ;24.325 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 944 ;13.123 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 31 ;12.506 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 826 ; 0.107 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6121 ; 0.011 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1248 ; 0.006 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NCS TYPE: LOCAL REMARK 3 NUMBER OF DIFFERENT NCS PAIRS : 1 REMARK 3 GROUP CHAIN1 RANGE CHAIN2 RANGE COUNT RMS WEIGHT REMARK 3 1 A -1 323 B -1 323 21131 0.09 0.05 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4L1W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 07-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080076. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 31-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979310 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX225HE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32561 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.200 REMARK 200 RESOLUTION RANGE LOW (A) : 21.500 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.03700 REMARK 200 R SYM (I) : NULL REMARK 200 <I/SIGMA(I)> FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.20 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.32 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.9 REMARK 200 DATA REDUNDANCY IN SHELL : 3.70 REMARK 200 R MERGE FOR SHELL (I) : 0.05600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 <I/SIGMA(I)> FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 1J96 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.06 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG3350, 0.1M SODIUM CACODYLATE, REMARK 280 0.2M AMMONIUM SULFATE, 0.8MM PROGESTERONE, PH 6.0, VAPOR REMARK 280 DIFFUSION, HANGING DROP, TEMPERATURE 295K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 43.41000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD2 ASP A 309 O HOH A 660 2.10 REMARK 500 O HOH B 609 O HOH B 640 2.15 REMARK 500 NH2 ARG A 200 O HOH A 638 2.17 REMARK 500 NZ LYS A 179 O HOH A 613 2.18 REMARK 500 OD2 ASP A 1 O HOH A 551 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 HIS A 222 NE2 HIS A 222 CD2 -0.069 REMARK 500 HIS B 117 NE2 HIS B 117 CD2 -0.075 REMARK 500 GLU B 285 CG GLU B 285 CD -0.099 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 278 NE - CZ - NH1 ANGL. DEV. = 5.1 DEGREES REMARK 500 ARG A 278 NE - CZ - NH2 ANGL. DEV. = -3.8 DEGREES REMARK 500 ASP A 297 CB - CG - OD1 ANGL. DEV. = 5.7 DEGREES REMARK 500 ARG A 301 NE - CZ - NH2 ANGL. DEV. = -3.7 DEGREES REMARK 500 GLU B 285 OE1 - CD - OE2 ANGL. DEV. = 12.0 DEGREES REMARK 500 LEU B 306 CB - CG - CD1 ANGL. DEV. = 11.0 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 1 85.80 -160.56 REMARK 500 SER A 221 164.24 79.49 REMARK 500 ARG A 250 -146.40 -120.40 REMARK 500 ARG A 301 27.86 -153.05 REMARK 500 ASP B 1 85.31 -157.21 REMARK 500 SER B 51 -159.65 -135.10 REMARK 500 PHE B 197 77.26 -153.53 REMARK 500 SER B 221 169.27 79.72 REMARK 500 ARG B 250 -155.50 -122.35 REMARK 500 ARG B 301 26.18 -153.89 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STR A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NAP B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE STR B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 403 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L1X RELATED DB: PDB DBREF 4L1W A 2 323 UNP P52895 AK1C2_HUMAN 2 323 DBREF 4L1W B 2 323 UNP P52895 AK1C2_HUMAN 2 323 SEQADV 4L1W SER A -1 UNP P52895 EXPRESSION TAG SEQADV 4L1W VAL A 0 UNP P52895 EXPRESSION TAG SEQADV 4L1W ASP A 1 UNP P52895 EXPRESSION TAG SEQADV 4L1W SER B -1 UNP P52895 EXPRESSION TAG SEQADV 4L1W VAL B 0 UNP P52895 EXPRESSION TAG SEQADV 4L1W ASP B 1 UNP P52895 EXPRESSION TAG SEQRES 1 A 325 SER VAL ASP ASP SER LYS TYR GLN CYS VAL LYS LEU ASN SEQRES 2 A 325 ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR SEQRES 3 A 325 ALA PRO ALA GLU VAL PRO LYS SER LYS ALA LEU GLU ALA SEQRES 4 A 325 VAL LYS LEU ALA ILE GLU ALA GLY PHE HIS HIS ILE ASP SEQRES 5 A 325 SER ALA HIS VAL TYR ASN ASN GLU GLU GLN VAL GLY LEU SEQRES 6 A 325 ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG SEQRES 7 A 325 GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER ASN SER SEQRES 8 A 325 HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ARG SER SEQRES 9 A 325 LEU LYS ASN LEU GLN LEU ASP TYR VAL ASP LEU TYR LEU SEQRES 10 A 325 ILE HIS PHE PRO VAL SER VAL LYS PRO GLY GLU GLU VAL SEQRES 11 A 325 ILE PRO LYS ASP GLU ASN GLY LYS ILE LEU PHE ASP THR SEQRES 12 A 325 VAL ASP LEU CYS ALA THR TRP GLU ALA MET GLU LYS CYS SEQRES 13 A 325 LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN SEQRES 14 A 325 PHE ASN HIS ARG LEU LEU GLU MET ILE LEU ASN LYS PRO SEQRES 15 A 325 GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS SEQRES 16 A 325 HIS PRO TYR PHE ASN GLN ARG LYS LEU LEU ASP PHE CYS SEQRES 17 A 325 LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU SEQRES 18 A 325 GLY SER HIS ARG GLU GLU PRO TRP VAL ASP PRO ASN SER SEQRES 19 A 325 PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA SEQRES 20 A 325 LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG SEQRES 21 A 325 TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER SEQRES 22 A 325 TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE SEQRES 23 A 325 GLU PHE GLN LEU THR SER GLU GLU MET LYS ALA ILE ASP SEQRES 24 A 325 GLY LEU ASN ARG ASN VAL ARG TYR LEU THR LEU ASP ILE SEQRES 25 A 325 PHE ALA GLY PRO PRO ASN TYR PRO PHE SER ASP GLU TYR SEQRES 1 B 325 SER VAL ASP ASP SER LYS TYR GLN CYS VAL LYS LEU ASN SEQRES 2 B 325 ASP GLY HIS PHE MET PRO VAL LEU GLY PHE GLY THR TYR SEQRES 3 B 325 ALA PRO ALA GLU VAL PRO LYS SER LYS ALA LEU GLU ALA SEQRES 4 B 325 VAL LYS LEU ALA ILE GLU ALA GLY PHE HIS HIS ILE ASP SEQRES 5 B 325 SER ALA HIS VAL TYR ASN ASN GLU GLU GLN VAL GLY LEU SEQRES 6 B 325 ALA ILE ARG SER LYS ILE ALA ASP GLY SER VAL LYS ARG SEQRES 7 B 325 GLU ASP ILE PHE TYR THR SER LYS LEU TRP SER ASN SER SEQRES 8 B 325 HIS ARG PRO GLU LEU VAL ARG PRO ALA LEU GLU ARG SER SEQRES 9 B 325 LEU LYS ASN LEU GLN LEU ASP TYR VAL ASP LEU TYR LEU SEQRES 10 B 325 ILE HIS PHE PRO VAL SER VAL LYS PRO GLY GLU GLU VAL SEQRES 11 B 325 ILE PRO LYS ASP GLU ASN GLY LYS ILE LEU PHE ASP THR SEQRES 12 B 325 VAL ASP LEU CYS ALA THR TRP GLU ALA MET GLU LYS CYS SEQRES 13 B 325 LYS ASP ALA GLY LEU ALA LYS SER ILE GLY VAL SER ASN SEQRES 14 B 325 PHE ASN HIS ARG LEU LEU GLU MET ILE LEU ASN LYS PRO SEQRES 15 B 325 GLY LEU LYS TYR LYS PRO VAL CYS ASN GLN VAL GLU CYS SEQRES 16 B 325 HIS PRO TYR PHE ASN GLN ARG LYS LEU LEU ASP PHE CYS SEQRES 17 B 325 LYS SER LYS ASP ILE VAL LEU VAL ALA TYR SER ALA LEU SEQRES 18 B 325 GLY SER HIS ARG GLU GLU PRO TRP VAL ASP PRO ASN SER SEQRES 19 B 325 PRO VAL LEU LEU GLU ASP PRO VAL LEU CYS ALA LEU ALA SEQRES 20 B 325 LYS LYS HIS LYS ARG THR PRO ALA LEU ILE ALA LEU ARG SEQRES 21 B 325 TYR GLN LEU GLN ARG GLY VAL VAL VAL LEU ALA LYS SER SEQRES 22 B 325 TYR ASN GLU GLN ARG ILE ARG GLN ASN VAL GLN VAL PHE SEQRES 23 B 325 GLU PHE GLN LEU THR SER GLU GLU MET LYS ALA ILE ASP SEQRES 24 B 325 GLY LEU ASN ARG ASN VAL ARG TYR LEU THR LEU ASP ILE SEQRES 25 B 325 PHE ALA GLY PRO PRO ASN TYR PRO PHE SER ASP GLU TYR HET NAP A 401 48 HET STR A 402 23 HET SO4 A 403 5 HET NAP B 401 48 HET STR B 402 23 HET SO4 B 403 5 HETNAM NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE HETNAM STR PROGESTERONE HETNAM SO4 SULFATE ION HETSYN NAP 2'-MONOPHOSPHOADENOSINE 5'-DIPHOSPHORIBOSE FORMUL 3 NAP 2(C21 H28 N7 O17 P3) FORMUL 4 STR 2(C21 H30 O2) FORMUL 5 SO4 2(O4 S 2-) FORMUL 9 HOH *369(H2 O) HELIX 1 1 LYS A 31 GLY A 45 1 15 HELIX 2 2 ALA A 52 ASN A 56 5 5 HELIX 3 3 ASN A 57 ASP A 71 1 15 HELIX 4 4 LYS A 75 ILE A 79 5 5 HELIX 5 5 ARG A 91 GLN A 107 1 17 HELIX 6 6 ASP A 143 ALA A 157 1 15 HELIX 7 7 ASN A 169 ASN A 178 1 10 HELIX 8 8 GLN A 199 LYS A 209 1 11 HELIX 9 9 VAL A 234 GLU A 237 5 4 HELIX 10 10 ASP A 238 LYS A 249 1 12 HELIX 11 11 THR A 251 ARG A 263 1 13 HELIX 12 12 ASN A 273 GLN A 282 1 10 HELIX 13 13 VAL A 283 PHE A 286 5 4 HELIX 14 14 THR A 289 GLY A 298 1 10 HELIX 15 15 LEU A 308 ALA A 312 5 5 HELIX 16 16 LYS B 31 GLY B 45 1 15 HELIX 17 17 ALA B 52 ASN B 56 5 5 HELIX 18 18 ASN B 57 ASP B 71 1 15 HELIX 19 19 LYS B 75 ILE B 79 5 5 HELIX 20 20 TRP B 86 HIS B 90 5 5 HELIX 21 21 ARG B 91 GLN B 107 1 17 HELIX 22 22 ASP B 143 ALA B 157 1 15 HELIX 23 23 ASN B 169 ASN B 178 1 10 HELIX 24 24 GLN B 199 LYS B 209 1 11 HELIX 25 25 VAL B 234 GLU B 237 5 4 HELIX 26 26 ASP B 238 LYS B 249 1 12 HELIX 27 27 THR B 251 ARG B 263 1 13 HELIX 28 28 ASN B 273 GLN B 282 1 10 HELIX 29 29 VAL B 283 PHE B 286 5 4 HELIX 30 30 THR B 289 GLY B 298 1 10 HELIX 31 31 LEU B 308 ALA B 312 5 5 SHEET 1 A 2 CYS A 7 LYS A 9 0 SHEET 2 A 2 PHE A 15 PRO A 17 -1 O MET A 16 N VAL A 8 SHEET 1 B 9 LEU A 19 GLY A 22 0 SHEET 2 B 9 HIS A 48 ASP A 50 1 O ASP A 50 N PHE A 21 SHEET 3 B 9 PHE A 80 LEU A 85 1 O PHE A 80 N ILE A 49 SHEET 4 B 9 VAL A 111 ILE A 116 1 O LEU A 115 N LEU A 85 SHEET 5 B 9 ALA A 160 SER A 166 1 O LYS A 161 N VAL A 111 SHEET 6 B 9 CYS A 188 GLU A 192 1 O GLN A 190 N VAL A 165 SHEET 7 B 9 VAL A 212 TYR A 216 1 O TYR A 216 N VAL A 191 SHEET 8 B 9 VAL A 266 LYS A 270 1 O VAL A 266 N ALA A 215 SHEET 9 B 9 LEU A 19 GLY A 22 1 N GLY A 20 O VAL A 267 SHEET 1 C 2 CYS B 7 LYS B 9 0 SHEET 2 C 2 PHE B 15 PRO B 17 -1 O MET B 16 N VAL B 8 SHEET 1 D 9 LEU B 19 GLY B 22 0 SHEET 2 D 9 HIS B 48 ASP B 50 1 O HIS B 48 N PHE B 21 SHEET 3 D 9 PHE B 80 LEU B 85 1 O PHE B 80 N ILE B 49 SHEET 4 D 9 VAL B 111 ILE B 116 1 O LEU B 115 N LEU B 85 SHEET 5 D 9 ALA B 160 SER B 166 1 O LYS B 161 N VAL B 111 SHEET 6 D 9 CYS B 188 GLU B 192 1 O GLN B 190 N VAL B 165 SHEET 7 D 9 VAL B 212 TYR B 216 1 O TYR B 216 N VAL B 191 SHEET 8 D 9 VAL B 266 LYS B 270 1 O VAL B 266 N ALA B 215 SHEET 9 D 9 LEU B 19 GLY B 22 1 N GLY B 20 O VAL B 267 CISPEP 1 GLU A 225 PRO A 226 0 3.40 CISPEP 2 GLU B 225 PRO B 226 0 -5.37 SITE 1 AC1 30 GLY A 22 THR A 23 TYR A 24 ASP A 50 SITE 2 AC1 30 TYR A 55 LYS A 84 HIS A 117 SER A 166 SITE 3 AC1 30 ASN A 167 GLN A 190 TYR A 216 SER A 217 SITE 4 AC1 30 ALA A 218 LEU A 219 GLY A 220 SER A 221 SITE 5 AC1 30 HIS A 222 ALA A 253 LEU A 268 LYS A 270 SITE 6 AC1 30 SER A 271 TYR A 272 ARG A 276 GLN A 279 SITE 7 AC1 30 ASN A 280 HOH A 529 HOH A 558 HOH A 671 SITE 8 AC1 30 HOH A 673 HOH A 686 SITE 1 AC2 8 TYR A 24 VAL A 128 ILE A 129 HIS A 222 SITE 2 AC2 8 TRP A 227 LEU A 306 LEU A 308 HOH A 673 SITE 1 AC3 5 PRO A 180 GLY A 181 GLN A 275 ARG A 278 SITE 2 AC3 5 HOH A 561 SITE 1 AC4 27 GLY B 22 THR B 23 TYR B 24 ASP B 50 SITE 2 AC4 27 TYR B 55 LYS B 84 HIS B 117 SER B 166 SITE 3 AC4 27 ASN B 167 GLN B 190 TYR B 216 SER B 217 SITE 4 AC4 27 ALA B 218 LEU B 219 SER B 221 HIS B 222 SITE 5 AC4 27 ALA B 253 LEU B 268 LYS B 270 SER B 271 SITE 6 AC4 27 TYR B 272 ARG B 276 GLN B 279 ASN B 280 SITE 7 AC4 27 STR B 402 HOH B 515 HOH B 572 SITE 1 AC5 7 TYR B 24 VAL B 128 ILE B 129 TRP B 227 SITE 2 AC5 7 LEU B 308 NAP B 401 HOH B 572 SITE 1 AC6 8 GLN A 262 SER A 290 ARG B 200 LYS B 207 SITE 2 AC6 8 ARG B 263 HOH B 504 HOH B 585 HOH B 622 CRYST1 52.800 86.820 76.490 90.00 105.96 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.018939 0.000000 0.005416 0.00000 SCALE2 0.000000 0.011518 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013598 0.00000