HEADER HYDROLASE 04-JUN-13 4L2H TITLE STRUCTURE OF A CATALYTICALLY INACTIVE PARG IN COMPLEX WITH A POLY-ADP- TITLE 2 RIBOSE FRAGMENT COMPND MOL_ID: 1; COMPND 2 MOLECULE: POLY(ADP-RIBOSE) GLYCOHYDROLASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.143; COMPND 5 ENGINEERED: YES; COMPND 6 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: TETRAHYMENA THERMOPHILA; SOURCE 3 ORGANISM_TAXID: 5911; SOURCE 4 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 5 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS MACRODOMAIN, POLY-ADP-RIBOSE GLYCOHYDROLASE, POLY-ADP-RIBOSE, KEYWDS 2 HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR A.BRASSINGTON,M.S.DUNSTAN,D.LEYS REVDAT 4 20-SEP-23 4L2H 1 SEQADV HETSYN LINK REVDAT 3 21-AUG-13 4L2H 1 JRNL REVDAT 2 07-AUG-13 4L2H 1 JRNL REVDAT 1 24-JUL-13 4L2H 0 JRNL AUTH E.BARKAUSKAITE,A.BRASSINGTON,E.S.TAN,J.WARWICKER, JRNL AUTH 2 M.S.DUNSTAN,B.BANOS,P.LAFITE,M.AHEL,T.J.MITCHISON,I.AHEL, JRNL AUTH 3 D.LEYS JRNL TITL VISUALIZATION OF POLY(ADP-RIBOSE) BOUND TO PARG REVEALS JRNL TITL 2 INHERENT BALANCE BETWEEN EXO- AND ENDO-GLYCOHYDROLASE JRNL TITL 3 ACTIVITIES. JRNL REF NAT COMMUN V. 4 2164 2013 JRNL REFN ESSN 2041-1723 JRNL PMID 23917065 JRNL DOI 10.1038/NCOMMS3164 REMARK 2 REMARK 2 RESOLUTION. 1.46 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0102 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.46 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.51 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 3 NUMBER OF REFLECTIONS : 97166 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.140 REMARK 3 R VALUE (WORKING SET) : 0.138 REMARK 3 FREE R VALUE : 0.177 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5111 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.46 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.50 REMARK 3 REFLECTION IN BIN (WORKING SET) : 7003 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.74 REMARK 3 BIN R VALUE (WORKING SET) : 0.2420 REMARK 3 BIN FREE R VALUE SET COUNT : 354 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3587 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 462 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 13.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.31000 REMARK 3 B22 (A**2) : -0.11000 REMARK 3 B33 (A**2) : -0.20000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.055 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.055 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.031 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.809 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.974 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.961 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3808 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 2654 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5150 ; 2.067 ; 1.990 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6534 ; 1.229 ; 3.006 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 467 ; 6.102 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 188 ;37.443 ;25.904 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 757 ;11.697 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;16.368 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 565 ; 0.152 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 4151 ; 0.011 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 736 ; 0.002 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2224 ; 2.450 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 898 ; 0.943 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3619 ; 3.500 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1584 ; 5.569 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1517 ; 7.983 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 6462 ; 2.338 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4L2H COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 12-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080097. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-AUG-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I03 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.976 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XDS REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 97166 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.460 REMARK 200 RESOLUTION RANGE LOW (A) : 29.510 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4EPP REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.27 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.63 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M HEPES, PH 7.0, 30% V/V JEFFAMINE REMARK 280 ED-2001, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 27.96400 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 69.47850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.85650 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 69.47850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 27.96400 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.85650 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -19 REMARK 465 GLY A -18 REMARK 465 SER A -17 REMARK 465 SER A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 SER A -9 REMARK 465 SER A -8 REMARK 465 GLY A -7 REMARK 465 LEU A -6 REMARK 465 VAL A -5 REMARK 465 PRO A -4 REMARK 465 ARG A -3 REMARK 465 GLY A -2 REMARK 465 SER A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ILE A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 GLU A 5 REMARK 465 LYS A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 ASN A 9 REMARK 465 LYS A 10 REMARK 465 LYS A 11 REMARK 465 ILE A 12 REMARK 465 GLN A 13 REMARK 465 GLU A 450 REMARK 465 LYS A 451 REMARK 465 ALA A 452 REMARK 465 THR A 453 REMARK 465 SER A 454 REMARK 465 LYS A 455 REMARK 465 ASN A 456 REMARK 465 SER A 457 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 43 CD CE NZ REMARK 470 LYS A 112 CD CE NZ REMARK 470 GLU A 401 CG CD OE1 OE2 REMARK 470 LYS A 405 CE NZ REMARK 470 GLN A 416 CD OE1 NE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE1 GLN A 159 O HOH A 1017 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 GLU A 81 CG GLU A 81 CD 0.111 REMARK 500 GLU A 81 CD GLU A 81 OE1 0.080 REMARK 500 LYS A 168 CD LYS A 168 CE -0.227 REMARK 500 GLU A 355 CD GLU A 355 OE2 -0.068 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 79 CB - CG - OD1 ANGL. DEV. = 6.8 DEGREES REMARK 500 ASP A 79 CB - CG - OD2 ANGL. DEV. = -7.1 DEGREES REMARK 500 TYR A 128 CB - CG - CD2 ANGL. DEV. = -3.9 DEGREES REMARK 500 ARG A 165 NE - CZ - NH2 ANGL. DEV. = -3.6 DEGREES REMARK 500 LYS A 210 CD - CE - NZ ANGL. DEV. = -13.8 DEGREES REMARK 500 ASP A 224 CB - CG - OD2 ANGL. DEV. = -5.4 DEGREES REMARK 500 ARG A 258 NE - CZ - NH1 ANGL. DEV. = 5.5 DEGREES REMARK 500 ARG A 258 NE - CZ - NH2 ANGL. DEV. = -7.2 DEGREES REMARK 500 PHE A 352 CB - CG - CD2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLN A 89 -52.25 -121.84 REMARK 500 PHE A 230 71.20 -116.47 REMARK 500 LEU A 252 44.01 -165.41 REMARK 500 VAL A 253 -155.54 -110.94 REMARK 500 SER A 297 -125.04 54.67 REMARK 500 LYS A 365 47.84 -75.32 REMARK 500 REMARK 500 REMARK: NULL REMARK 610 REMARK 610 MISSING HETEROATOM REMARK 610 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 610 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 610 I=INSERTION CODE): REMARK 610 M RES C SSEQI REMARK 610 AR6 A 700 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR LINKED RESIDUES A 700 to 701 DBREF 4L2H A 1 457 UNP I6L8L7 I6L8L7_TETTH 1 457 SEQADV 4L2H MET A -19 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H GLY A -18 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H SER A -17 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H SER A -16 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H HIS A -15 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H HIS A -14 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H HIS A -13 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H HIS A -12 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H HIS A -11 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H HIS A -10 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H SER A -9 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H SER A -8 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H GLY A -7 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H LEU A -6 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H VAL A -5 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H PRO A -4 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H ARG A -3 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H GLY A -2 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H SER A -1 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H HIS A 0 UNP I6L8L7 EXPRESSION TAG SEQADV 4L2H GLN A 256 UNP I6L8L7 GLU 256 ENGINEERED MUTATION SEQRES 1 A 477 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 477 LEU VAL PRO ARG GLY SER HIS MET ILE GLU ALA GLU LYS SEQRES 3 A 477 GLN GLU ASN LYS LYS ILE GLN ASP TYR GLN PHE PRO LEU SEQRES 4 A 477 PRO GLN LYS ASN SER GLU LEU TRP ILE ILE GLN LYS LYS SEQRES 5 A 477 THR LEU GLN ASP LEU SER SER GLY LYS GLN LYS LEU ASP SEQRES 6 A 477 SER PHE GLN SER LEU GLU SER ILE LEU GLU ILE LEU ARG SEQRES 7 A 477 ASP SER LYS ASN GLN ASN ASP GLU LYS TYR PHE ASN LEU SEQRES 8 A 477 LYS ALA VAL PHE GLU GLN LEU ASP LYS GLU GLU GLN THR SEQRES 9 A 477 TYR PHE LEU GLU GLN PHE ILE PRO LYS ILE CYS GLN LEU SEQRES 10 A 477 VAL LEU LYS ILE LYS LYS LYS GLN LEU LYS ASN GLN ILE SEQRES 11 A 477 PRO LYS GLU SER LYS ILE TYR GLU ALA ALA PHE SER ARG SEQRES 12 A 477 GLU GLU ILE SER TYR TYR VAL SER CYS MET PHE LEU CYS SEQRES 13 A 477 ILE LEU LYS ASP GLN ASP ARG LYS ILE TYR LYS ASP PHE SEQRES 14 A 477 ARG LEU ILE TYR LEU LYS ASP LEU VAL GLN GLN ILE ASN SEQRES 15 A 477 ILE ARG ARG GLN GLU LYS ILE LYS CYS PHE TYR GLU TYR SEQRES 16 A 477 LEU LYS GLN ALA LEU ASP PHE SER GLU LYS GLU SER LYS SEQRES 17 A 477 GLU VAL VAL ILE PHE GLN ARG ILE ASN CYS GLY GLN LEU SEQRES 18 A 477 GLU ASP TYR GLU ASN TRP VAL ASP LYS LEU LYS ALA ILE SEQRES 19 A 477 LYS LEU LYS ASN VAL GLN LEU THR ASP ASP LYS LEU ILE SEQRES 20 A 477 GLU ASP PHE PRO GLY THR LEU GLN VAL ASP PHE ALA ASN SEQRES 21 A 477 CYS ASP ILE GLY GLY GLY ILE LEU GLY ASN GLY LEU VAL SEQRES 22 A 477 GLN GLU GLN ILE ARG PHE CYS VAL CYS PRO GLU MET LEU SEQRES 23 A 477 VAL SER LEU LEU VAL PHE ASP GLN SER MET GLU ALA ASN SEQRES 24 A 477 GLU VAL ILE ILE MET LYS GLY ILE LYS GLN TYR SER ASP SEQRES 25 A 477 TYR GLN GLY TYR SER ASN SER PHE ARG PHE VAL LYS MET SEQRES 26 A 477 GLY ASN SER LYS ILE GLN LYS GLN LYS ARG ASN ASN PRO SEQRES 27 A 477 GLN THR ILE LEU ALA ILE ASP ALA LEU CYS PHE ASN SER SEQRES 28 A 477 SER ASP ASN GLN PHE SER GLU VAL ASN VAL SER ARG GLU SEQRES 29 A 477 LEU ASN LYS SER TYR MET GLY PHE LYS GLN GLU ASP GLN SEQRES 30 A 477 LEU LYS THR ILE SER THR GLY LYS TRP GLY CYS GLY ALA SEQRES 31 A 477 PHE LEU GLY VAL PHE ASP LEU LYS PHE ALA ILE GLN TRP SEQRES 32 A 477 ILE ALA SER SER ARG SER ASN LYS LYS MET ILE ILE CYS SEQRES 33 A 477 THR PHE GLN ASP GLU GLN THR THR LYS GLN ILE GLN GLN SEQRES 34 A 477 VAL PHE ASP LEU TYR LYS GLN LYS ASN ALA SER ILE PHE SEQRES 35 A 477 LEU LYS LEU VAL MET ASP TYR PRO ASN SER LYS TYR MET SEQRES 36 A 477 GLU ASP TYR THR LEU LEU GLU TYR LEU ILE GLU LEU GLY SEQRES 37 A 477 LYS GLU LYS ALA THR SER LYS ASN SER HET AR6 A 700 27 HET AR6 A 701 35 HETNAM AR6 [(2R,3S,4R,5R)-5-(6-AMINOPURIN-9-YL)-3,4-DIHYDROXY- HETNAM 2 AR6 OXOLAN-2-YL]METHYL [HYDROXY-[[(2R,3S,4R,5S)-3,4,5- HETNAM 3 AR6 TRIHYDROXYOXOLAN-2-YL]METHOXY]PHOSPHORYL] HYDROGEN HETNAM 4 AR6 PHOSPHATE HETSYN AR6 ADENOSINE-5-DIPHOSPHORIBOSE FORMUL 2 AR6 2(C15 H23 N5 O14 P2) FORMUL 4 HOH *462(H2 O) HELIX 1 1 PRO A 20 LYS A 22 5 3 HELIX 2 2 ASN A 23 GLY A 40 1 18 HELIX 3 3 SER A 46 ASP A 59 1 14 HELIX 4 4 ASN A 64 LYS A 67 5 4 HELIX 5 5 TYR A 68 LEU A 78 1 11 HELIX 6 6 ASP A 79 GLN A 89 1 11 HELIX 7 7 GLN A 89 LYS A 100 1 12 HELIX 8 8 ARG A 123 LEU A 135 1 13 HELIX 9 9 PHE A 149 LEU A 154 1 6 HELIX 10 10 VAL A 158 ASP A 181 1 24 HELIX 11 11 SER A 183 GLU A 189 1 7 HELIX 12 12 ASP A 203 LEU A 211 1 9 HELIX 13 13 LEU A 226 PHE A 230 5 5 HELIX 14 14 VAL A 253 CYS A 262 1 10 HELIX 15 15 PRO A 263 LEU A 266 5 4 HELIX 16 16 VAL A 267 PHE A 272 1 6 HELIX 17 17 TYR A 296 PHE A 300 5 5 HELIX 18 18 SER A 308 ASN A 317 1 10 HELIX 19 19 SER A 337 LYS A 353 1 17 HELIX 20 20 VAL A 374 SER A 389 1 16 HELIX 21 21 ASP A 400 LYS A 415 1 16 HELIX 22 22 ASN A 418 TYR A 429 1 12 HELIX 23 23 PRO A 430 SER A 432 5 3 HELIX 24 24 THR A 439 LEU A 447 1 9 SHEET 1 A 2 TYR A 15 PRO A 18 0 SHEET 2 A 2 GLN A 105 ASN A 108 -1 O ASN A 108 N TYR A 15 SHEET 1 B 8 ILE A 116 SER A 122 0 SHEET 2 B 8 VAL A 190 ASN A 197 -1 O VAL A 191 N PHE A 121 SHEET 3 B 8 GLU A 280 ILE A 287 -1 O ILE A 283 N GLN A 194 SHEET 4 B 8 GLN A 319 ILE A 324 -1 O ALA A 323 N ILE A 282 SHEET 5 B 8 LEU A 234 PHE A 238 1 N ASP A 237 O LEU A 322 SHEET 6 B 8 THR A 360 THR A 363 1 O SER A 362 N LEU A 234 SHEET 7 B 8 LYS A 392 CYS A 396 1 O ILE A 394 N ILE A 361 SHEET 8 B 8 VAL A 219 THR A 222 1 N GLN A 220 O ILE A 395 SHEET 1 C 2 LYS A 139 ASP A 140 0 SHEET 2 C 2 ILE A 145 TYR A 146 -1 O ILE A 145 N ASP A 140 SHEET 1 D 2 ASP A 292 GLN A 294 0 SHEET 2 D 2 ARG A 301 VAL A 303 -1 O VAL A 303 N ASP A 292 LINK O2' AR6 A 700 C1D AR6 A 701 1555 1555 1.47 SITE 1 AC1 38 ARG A 164 LEU A 226 ILE A 227 GLU A 228 SITE 2 AC1 38 PHE A 238 ASN A 240 GLY A 245 GLY A 246 SITE 3 AC1 38 GLY A 249 ASN A 250 GLY A 251 LEU A 252 SITE 4 AC1 38 VAL A 253 GLN A 254 GLU A 255 GLN A 256 SITE 5 AC1 38 TYR A 296 SER A 297 LYS A 365 GLY A 367 SITE 6 AC1 38 CYS A 368 GLY A 369 ALA A 370 PHE A 371 SITE 7 AC1 38 PHE A 398 HOH A 815 HOH A 825 HOH A 827 SITE 8 AC1 38 HOH A 835 HOH A 888 HOH A 930 HOH A1048 SITE 9 AC1 38 HOH A1051 HOH A1075 HOH A1120 HOH A1143 SITE 10 AC1 38 HOH A1149 HOH A1259 CRYST1 55.928 75.713 138.957 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.017880 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013208 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007196 0.00000