data_4L3M # _entry.id 4L3M # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.280 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4L3M RCSB RCSB080138 WWPDB D_1000080138 # _pdbx_database_PDB_obs_spr.id OBSLTE _pdbx_database_PDB_obs_spr.date 2014-11-05 _pdbx_database_PDB_obs_spr.pdb_id 4QP0 _pdbx_database_PDB_obs_spr.replace_pdb_id 4L3M _pdbx_database_PDB_obs_spr.details ? # _pdbx_database_status.status_code OBS _pdbx_database_status.entry_id 4L3M _pdbx_database_status.recvd_initial_deposition_date 2013-06-06 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site PDBJ _pdbx_database_status.methods_development_category ? _pdbx_database_status.status_code_sf OBS _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Qin, Z.' 1 'Liu, Y.' 2 'Zhou, P.' 3 'Jiang, Z.Q.' 4 'Yang, S.Q.' 5 # _citation.id primary _citation.title 'Structure of the endo-1,4-beta-mannanase from thermophilic fungus Rhizomucor miehei' _citation.journal_abbrev 'To be Published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Qin, Z.' 1 primary 'Liu, Y.' 2 primary 'Zhou, P.' 3 primary 'Jiang, Z.Q.' 4 primary 'Yang, S.Q.' 5 # _cell.entry_id 4L3M _cell.length_a 86.38 _cell.length_b 89.71 _cell.length_c 111.29 _cell.angle_alpha 90 _cell.angle_beta 90 _cell.angle_gamma 90 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4L3M _symmetry.space_group_name_H-M 'I 2 2 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 23 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man Endo-beta-mannanase 40043.797 1 3.2.1.78 ? 'UNP RESIDUES 20-378' ? 2 non-polymer syn 'SULFATE ION' 96.063 1 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;ASSFVQTSGPQFTLDGKPFYFEGTNAYYLMTSDQSNVKQVFSDMKSLGLPVVRTWLFNLGSDSVWFQQWDSSSNKMVIND NSDTGLGRIDYIIQQAASQDIKLIFTLNNNWEDYGGMDYYVKNFGGTYHDDFYTNTEMIDSFKEYISHVLNRENSLTGVK YKDDPTIFGWEIANEPRCVGSGDFPASSNCSTTVTTAWIKEISEYIKSIDSNHLVAVGDEGFFNRKGESDYEYNGGSGMD FDAILALSSIDFGTFHLYPEAWSKGTDSSWSVQWIKDHAAAQADADKPVIMEEYGLSTDALRVAQYPVWQGTVEDEDLAA DAFWQIAVPCSTMDGFGICASDNDIATTVTNHADAMAKK ; _entity_poly.pdbx_seq_one_letter_code_can ;ASSFVQTSGPQFTLDGKPFYFEGTNAYYLMTSDQSNVKQVFSDMKSLGLPVVRTWLFNLGSDSVWFQQWDSSSNKMVIND NSDTGLGRIDYIIQQAASQDIKLIFTLNNNWEDYGGMDYYVKNFGGTYHDDFYTNTEMIDSFKEYISHVLNRENSLTGVK YKDDPTIFGWEIANEPRCVGSGDFPASSNCSTTVTTAWIKEISEYIKSIDSNHLVAVGDEGFFNRKGESDYEYNGGSGMD FDAILALSSIDFGTFHLYPEAWSKGTDSSWSVQWIKDHAAAQADADKPVIMEEYGLSTDALRVAQYPVWQGTVEDEDLAA DAFWQIAVPCSTMDGFGICASDNDIATTVTNHADAMAKK ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 ALA n 1 2 SER n 1 3 SER n 1 4 PHE n 1 5 VAL n 1 6 GLN n 1 7 THR n 1 8 SER n 1 9 GLY n 1 10 PRO n 1 11 GLN n 1 12 PHE n 1 13 THR n 1 14 LEU n 1 15 ASP n 1 16 GLY n 1 17 LYS n 1 18 PRO n 1 19 PHE n 1 20 TYR n 1 21 PHE n 1 22 GLU n 1 23 GLY n 1 24 THR n 1 25 ASN n 1 26 ALA n 1 27 TYR n 1 28 TYR n 1 29 LEU n 1 30 MET n 1 31 THR n 1 32 SER n 1 33 ASP n 1 34 GLN n 1 35 SER n 1 36 ASN n 1 37 VAL n 1 38 LYS n 1 39 GLN n 1 40 VAL n 1 41 PHE n 1 42 SER n 1 43 ASP n 1 44 MET n 1 45 LYS n 1 46 SER n 1 47 LEU n 1 48 GLY n 1 49 LEU n 1 50 PRO n 1 51 VAL n 1 52 VAL n 1 53 ARG n 1 54 THR n 1 55 TRP n 1 56 LEU n 1 57 PHE n 1 58 ASN n 1 59 LEU n 1 60 GLY n 1 61 SER n 1 62 ASP n 1 63 SER n 1 64 VAL n 1 65 TRP n 1 66 PHE n 1 67 GLN n 1 68 GLN n 1 69 TRP n 1 70 ASP n 1 71 SER n 1 72 SER n 1 73 SER n 1 74 ASN n 1 75 LYS n 1 76 MET n 1 77 VAL n 1 78 ILE n 1 79 ASN n 1 80 ASP n 1 81 ASN n 1 82 SER n 1 83 ASP n 1 84 THR n 1 85 GLY n 1 86 LEU n 1 87 GLY n 1 88 ARG n 1 89 ILE n 1 90 ASP n 1 91 TYR n 1 92 ILE n 1 93 ILE n 1 94 GLN n 1 95 GLN n 1 96 ALA n 1 97 ALA n 1 98 SER n 1 99 GLN n 1 100 ASP n 1 101 ILE n 1 102 LYS n 1 103 LEU n 1 104 ILE n 1 105 PHE n 1 106 THR n 1 107 LEU n 1 108 ASN n 1 109 ASN n 1 110 ASN n 1 111 TRP n 1 112 GLU n 1 113 ASP n 1 114 TYR n 1 115 GLY n 1 116 GLY n 1 117 MET n 1 118 ASP n 1 119 TYR n 1 120 TYR n 1 121 VAL n 1 122 LYS n 1 123 ASN n 1 124 PHE n 1 125 GLY n 1 126 GLY n 1 127 THR n 1 128 TYR n 1 129 HIS n 1 130 ASP n 1 131 ASP n 1 132 PHE n 1 133 TYR n 1 134 THR n 1 135 ASN n 1 136 THR n 1 137 GLU n 1 138 MET n 1 139 ILE n 1 140 ASP n 1 141 SER n 1 142 PHE n 1 143 LYS n 1 144 GLU n 1 145 TYR n 1 146 ILE n 1 147 SER n 1 148 HIS n 1 149 VAL n 1 150 LEU n 1 151 ASN n 1 152 ARG n 1 153 GLU n 1 154 ASN n 1 155 SER n 1 156 LEU n 1 157 THR n 1 158 GLY n 1 159 VAL n 1 160 LYS n 1 161 TYR n 1 162 LYS n 1 163 ASP n 1 164 ASP n 1 165 PRO n 1 166 THR n 1 167 ILE n 1 168 PHE n 1 169 GLY n 1 170 TRP n 1 171 GLU n 1 172 ILE n 1 173 ALA n 1 174 ASN n 1 175 GLU n 1 176 PRO n 1 177 ARG n 1 178 CYS n 1 179 VAL n 1 180 GLY n 1 181 SER n 1 182 GLY n 1 183 ASP n 1 184 PHE n 1 185 PRO n 1 186 ALA n 1 187 SER n 1 188 SER n 1 189 ASN n 1 190 CYS n 1 191 SER n 1 192 THR n 1 193 THR n 1 194 VAL n 1 195 THR n 1 196 THR n 1 197 ALA n 1 198 TRP n 1 199 ILE n 1 200 LYS n 1 201 GLU n 1 202 ILE n 1 203 SER n 1 204 GLU n 1 205 TYR n 1 206 ILE n 1 207 LYS n 1 208 SER n 1 209 ILE n 1 210 ASP n 1 211 SER n 1 212 ASN n 1 213 HIS n 1 214 LEU n 1 215 VAL n 1 216 ALA n 1 217 VAL n 1 218 GLY n 1 219 ASP n 1 220 GLU n 1 221 GLY n 1 222 PHE n 1 223 PHE n 1 224 ASN n 1 225 ARG n 1 226 LYS n 1 227 GLY n 1 228 GLU n 1 229 SER n 1 230 ASP n 1 231 TYR n 1 232 GLU n 1 233 TYR n 1 234 ASN n 1 235 GLY n 1 236 GLY n 1 237 SER n 1 238 GLY n 1 239 MET n 1 240 ASP n 1 241 PHE n 1 242 ASP n 1 243 ALA n 1 244 ILE n 1 245 LEU n 1 246 ALA n 1 247 LEU n 1 248 SER n 1 249 SER n 1 250 ILE n 1 251 ASP n 1 252 PHE n 1 253 GLY n 1 254 THR n 1 255 PHE n 1 256 HIS n 1 257 LEU n 1 258 TYR n 1 259 PRO n 1 260 GLU n 1 261 ALA n 1 262 TRP n 1 263 SER n 1 264 LYS n 1 265 GLY n 1 266 THR n 1 267 ASP n 1 268 SER n 1 269 SER n 1 270 TRP n 1 271 SER n 1 272 VAL n 1 273 GLN n 1 274 TRP n 1 275 ILE n 1 276 LYS n 1 277 ASP n 1 278 HIS n 1 279 ALA n 1 280 ALA n 1 281 ALA n 1 282 GLN n 1 283 ALA n 1 284 ASP n 1 285 ALA n 1 286 ASP n 1 287 LYS n 1 288 PRO n 1 289 VAL n 1 290 ILE n 1 291 MET n 1 292 GLU n 1 293 GLU n 1 294 TYR n 1 295 GLY n 1 296 LEU n 1 297 SER n 1 298 THR n 1 299 ASP n 1 300 ALA n 1 301 LEU n 1 302 ARG n 1 303 VAL n 1 304 ALA n 1 305 GLN n 1 306 TYR n 1 307 PRO n 1 308 VAL n 1 309 TRP n 1 310 GLN n 1 311 GLY n 1 312 THR n 1 313 VAL n 1 314 GLU n 1 315 ASP n 1 316 GLU n 1 317 ASP n 1 318 LEU n 1 319 ALA n 1 320 ALA n 1 321 ASP n 1 322 ALA n 1 323 PHE n 1 324 TRP n 1 325 GLN n 1 326 ILE n 1 327 ALA n 1 328 VAL n 1 329 PRO n 1 330 CYS n 1 331 SER n 1 332 THR n 1 333 MET n 1 334 ASP n 1 335 GLY n 1 336 PHE n 1 337 GLY n 1 338 ILE n 1 339 CYS n 1 340 ALA n 1 341 SER n 1 342 ASP n 1 343 ASN n 1 344 ASP n 1 345 ILE n 1 346 ALA n 1 347 THR n 1 348 THR n 1 349 VAL n 1 350 THR n 1 351 ASN n 1 352 HIS n 1 353 ALA n 1 354 ASP n 1 355 ALA n 1 356 MET n 1 357 ALA n 1 358 LYS n 1 359 LYS n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene Man5A _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Rhizomucor miehei' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 4839 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name 'pET-28a(+)' _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code L7SVX1_RHIMI _struct_ref.pdbx_db_accession L7SVX1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;ASSFVQTSGPQFTLDGKPFYFEGTNAYYLMTSDQSNVKQVFSDMKSLGLPVVRTWLFNLGSDSVWFQQWDSSSNKMVIND NSDTGLGRIDYIIQQAASQDIKLIFTLNNNWEDYGGMDYYVKNFGGTYHDDFYTNTEMIDSFKEYISHVLNRENSLTGVK YKDDPTIFGWEIANEPRCVGSGDFPASSNCSTTVTTAWIKEISEYIKSIDSNHLVAVGDEGFFNRKGESDYEYNGGSGMD FDAILALSSIDFGTFHLYPEAWSKGTDSSWSVQWIKDHAAAQADADKPVIMEEYGLSTDALRVAQYPVWQGTVEDEDLAA DAFWQIAVPCSTMDGFGICASDNDIATTVTNHADAMAKK ; _struct_ref.pdbx_align_begin 20 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4L3M _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 1 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 359 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession L7SVX1 _struct_ref_seq.db_align_beg 20 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 378 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 359 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 SO4 non-polymer . 'SULFATE ION' ? 'O4 S -2' 96.063 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4L3M _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.69 _exptl_crystal.density_percent_sol 54.31 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 293 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 4.6 _exptl_crystal_grow.pdbx_details '1.6M ammonia sulfate, 6% glycerol, pH 4.6, VAPOR DIFFUSION, SITTING DROP, temperature 293K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type ? _diffrn_detector.pdbx_collection_date 2012-03-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.97943 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'PHOTON FACTORY BEAMLINE AR-NW12A' _diffrn_source.pdbx_synchrotron_site 'Photon Factory' _diffrn_source.pdbx_synchrotron_beamline AR-NW12A _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.97943 # _reflns.entry_id 4L3M _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 50 _reflns.d_resolution_high 2.26 _reflns.number_obs 18610 _reflns.number_all ? _reflns.percent_possible_obs 90.2 _reflns.pdbx_Rmerge_I_obs 0.092 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 7.0 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4L3M _refine.ls_number_reflns_obs 17561 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 2.0 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 50 _refine.ls_d_res_high 2.26 _refine.ls_percent_reflns_obs ? _refine.ls_R_factor_obs 0.224 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.222 _refine.ls_R_factor_R_free 0.260 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free ? _refine.ls_number_reflns_R_free 908 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values 'Engh & Huber' _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 2783 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 5 _refine_hist.number_atoms_solvent 0 _refine_hist.number_atoms_total 2788 _refine_hist.d_res_high 2.26 _refine_hist.d_res_low 50 # _struct.entry_id 4L3M _struct.title 'Structure of the endo-1,4-beta-mannanase from thermophilic fungus Rhizomucor miehei' _struct.pdbx_descriptor 'Endo-beta-mannanase (E.C.3.2.1.78)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4L3M _struct_keywords.pdbx_keywords HYDROLASE _struct_keywords.text 'mannanase, glycoside hydrolase family 5, HYDROLASE' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 TYR A 27 ? SER A 32 ? TYR A 27 SER A 32 5 ? 6 HELX_P HELX_P2 2 ASP A 33 ? GLY A 48 ? ASP A 33 GLY A 48 1 ? 16 HELX_P HELX_P3 3 LEU A 86 ? GLN A 99 ? LEU A 86 GLN A 99 1 ? 14 HELX_P HELX_P4 4 GLY A 115 ? GLY A 125 ? GLY A 115 GLY A 125 1 ? 11 HELX_P HELX_P5 5 TYR A 128 ? THR A 134 ? TYR A 128 THR A 134 5 ? 7 HELX_P HELX_P6 6 ASN A 135 ? ARG A 152 ? ASN A 135 ARG A 152 1 ? 18 HELX_P HELX_P7 7 LYS A 160 ? ASP A 164 ? LYS A 160 ASP A 164 5 ? 5 HELX_P HELX_P8 8 SER A 191 ? ASP A 210 ? SER A 191 ASP A 210 1 ? 20 HELX_P HELX_P9 9 ASP A 240 ? ALA A 246 ? ASP A 240 ALA A 246 1 ? 7 HELX_P HELX_P10 10 SER A 269 ? ALA A 285 ? SER A 269 ALA A 285 1 ? 17 HELX_P HELX_P11 11 THR A 298 ? GLU A 316 ? THR A 298 GLU A 316 1 ? 19 HELX_P HELX_P12 12 ASP A 344 ? VAL A 349 ? ASP A 344 VAL A 349 1 ? 6 HELX_P HELX_P13 13 VAL A 349 ? LYS A 359 ? VAL A 349 LYS A 359 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order disulf1 disulf ? ? A CYS 178 SG ? ? ? 1_555 A CYS 190 SG ? ? A CYS 178 A CYS 190 1_555 ? ? ? ? ? ? ? 2.051 ? disulf2 disulf ? ? A CYS 330 SG ? ? ? 1_555 A CYS 339 SG ? ? A CYS 330 A CYS 339 1_555 ? ? ? ? ? ? ? 2.054 ? # _struct_conn_type.id disulf _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_mon_prot_cis.pdbx_id _struct_mon_prot_cis.label_comp_id _struct_mon_prot_cis.label_seq_id _struct_mon_prot_cis.label_asym_id _struct_mon_prot_cis.label_alt_id _struct_mon_prot_cis.pdbx_PDB_ins_code _struct_mon_prot_cis.auth_comp_id _struct_mon_prot_cis.auth_seq_id _struct_mon_prot_cis.auth_asym_id _struct_mon_prot_cis.pdbx_label_comp_id_2 _struct_mon_prot_cis.pdbx_label_seq_id_2 _struct_mon_prot_cis.pdbx_label_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_ins_code_2 _struct_mon_prot_cis.pdbx_auth_comp_id_2 _struct_mon_prot_cis.pdbx_auth_seq_id_2 _struct_mon_prot_cis.pdbx_auth_asym_id_2 _struct_mon_prot_cis.pdbx_PDB_model_num _struct_mon_prot_cis.pdbx_omega_angle 1 TRP 324 A . ? TRP 324 A GLN 325 A ? GLN 325 A 1 -2.55 2 VAL 328 A . ? VAL 328 A PRO 329 A ? PRO 329 A 1 -4.59 # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 2 ? B ? 5 ? C ? 2 ? D ? 3 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel B 1 2 ? parallel B 2 3 ? parallel B 3 4 ? parallel B 4 5 ? parallel C 1 2 ? anti-parallel D 1 2 ? parallel D 2 3 ? parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLN A 6 ? SER A 8 ? GLN A 6 SER A 8 A 2 GLN A 11 ? THR A 13 ? GLN A 11 THR A 13 B 1 THR A 24 ? ASN A 25 ? THR A 24 ASN A 25 B 2 VAL A 51 ? TRP A 55 ? VAL A 51 TRP A 55 B 3 LYS A 102 ? THR A 106 ? LYS A 102 THR A 106 B 4 ILE A 167 ? GLU A 171 ? ILE A 167 GLU A 171 B 5 LEU A 214 ? ALA A 216 ? LEU A 214 ALA A 216 C 1 GLN A 67 ? ASP A 70 ? GLN A 67 ASP A 70 C 2 LYS A 75 ? ILE A 78 ? LYS A 75 ILE A 78 D 1 GLY A 253 ? LEU A 257 ? GLY A 253 LEU A 257 D 2 VAL A 289 ? TYR A 294 ? VAL A 289 TYR A 294 D 3 ALA A 320 ? ASP A 321 ? ALA A 320 ASP A 321 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLN A 6 ? N GLN A 6 O THR A 13 ? O THR A 13 B 1 2 N THR A 24 ? N THR A 24 O ARG A 53 ? O ARG A 53 B 2 3 N VAL A 52 ? N VAL A 52 O ILE A 104 ? O ILE A 104 B 3 4 N LEU A 103 ? N LEU A 103 O PHE A 168 ? O PHE A 168 B 4 5 N TRP A 170 ? N TRP A 170 O LEU A 214 ? O LEU A 214 C 1 2 N ASP A 70 ? N ASP A 70 O LYS A 75 ? O LYS A 75 D 1 2 N PHE A 255 ? N PHE A 255 O ILE A 290 ? O ILE A 290 D 2 3 N MET A 291 ? N MET A 291 O ALA A 320 ? O ALA A 320 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id ? _struct_site.pdbx_auth_comp_id ? _struct_site.pdbx_auth_seq_id ? _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 4 _struct_site.details 'BINDING SITE FOR RESIDUE SO4 A 401' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 GLY A 60 ? GLY A 60 . ? 1_555 ? 2 AC1 4 SER A 61 ? SER A 61 . ? 1_555 ? 3 AC1 4 TYR A 119 ? TYR A 119 . ? 1_555 ? 4 AC1 4 LYS A 122 ? LYS A 122 . ? 1_555 ? # _database_PDB_matrix.entry_id 4L3M _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4L3M _atom_sites.fract_transf_matrix[1][1] 0.011577 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.011147 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.008986 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 ALA 1 1 ? ? ? A . n A 1 2 SER 2 2 ? ? ? A . n A 1 3 SER 3 3 3 SER SER A . n A 1 4 PHE 4 4 4 PHE PHE A . n A 1 5 VAL 5 5 5 VAL VAL A . n A 1 6 GLN 6 6 6 GLN GLN A . n A 1 7 THR 7 7 7 THR THR A . n A 1 8 SER 8 8 8 SER SER A . n A 1 9 GLY 9 9 9 GLY GLY A . n A 1 10 PRO 10 10 10 PRO PRO A . n A 1 11 GLN 11 11 11 GLN GLN A . n A 1 12 PHE 12 12 12 PHE PHE A . n A 1 13 THR 13 13 13 THR THR A . n A 1 14 LEU 14 14 14 LEU LEU A . n A 1 15 ASP 15 15 15 ASP ASP A . n A 1 16 GLY 16 16 16 GLY GLY A . n A 1 17 LYS 17 17 17 LYS LYS A . n A 1 18 PRO 18 18 18 PRO PRO A . n A 1 19 PHE 19 19 19 PHE PHE A . n A 1 20 TYR 20 20 20 TYR TYR A . n A 1 21 PHE 21 21 21 PHE PHE A . n A 1 22 GLU 22 22 22 GLU GLU A . n A 1 23 GLY 23 23 23 GLY GLY A . n A 1 24 THR 24 24 24 THR THR A . n A 1 25 ASN 25 25 25 ASN ASN A . n A 1 26 ALA 26 26 26 ALA ALA A . n A 1 27 TYR 27 27 27 TYR TYR A . n A 1 28 TYR 28 28 28 TYR TYR A . n A 1 29 LEU 29 29 29 LEU LEU A . n A 1 30 MET 30 30 30 MET MET A . n A 1 31 THR 31 31 31 THR THR A . n A 1 32 SER 32 32 32 SER SER A . n A 1 33 ASP 33 33 33 ASP ASP A . n A 1 34 GLN 34 34 34 GLN GLN A . n A 1 35 SER 35 35 35 SER SER A . n A 1 36 ASN 36 36 36 ASN ASN A . n A 1 37 VAL 37 37 37 VAL VAL A . n A 1 38 LYS 38 38 38 LYS LYS A . n A 1 39 GLN 39 39 39 GLN GLN A . n A 1 40 VAL 40 40 40 VAL VAL A . n A 1 41 PHE 41 41 41 PHE PHE A . n A 1 42 SER 42 42 42 SER SER A . n A 1 43 ASP 43 43 43 ASP ASP A . n A 1 44 MET 44 44 44 MET MET A . n A 1 45 LYS 45 45 45 LYS LYS A . n A 1 46 SER 46 46 46 SER SER A . n A 1 47 LEU 47 47 47 LEU LEU A . n A 1 48 GLY 48 48 48 GLY GLY A . n A 1 49 LEU 49 49 49 LEU LEU A . n A 1 50 PRO 50 50 50 PRO PRO A . n A 1 51 VAL 51 51 51 VAL VAL A . n A 1 52 VAL 52 52 52 VAL VAL A . n A 1 53 ARG 53 53 53 ARG ARG A . n A 1 54 THR 54 54 54 THR THR A . n A 1 55 TRP 55 55 55 TRP TRP A . n A 1 56 LEU 56 56 56 LEU LEU A . n A 1 57 PHE 57 57 57 PHE PHE A . n A 1 58 ASN 58 58 58 ASN ASN A . n A 1 59 LEU 59 59 59 LEU LEU A . n A 1 60 GLY 60 60 60 GLY GLY A . n A 1 61 SER 61 61 61 SER SER A . n A 1 62 ASP 62 62 62 ASP ASP A . n A 1 63 SER 63 63 63 SER SER A . n A 1 64 VAL 64 64 64 VAL VAL A . n A 1 65 TRP 65 65 65 TRP TRP A . n A 1 66 PHE 66 66 66 PHE PHE A . n A 1 67 GLN 67 67 67 GLN GLN A . n A 1 68 GLN 68 68 68 GLN GLN A . n A 1 69 TRP 69 69 69 TRP TRP A . n A 1 70 ASP 70 70 70 ASP ASP A . n A 1 71 SER 71 71 71 SER SER A . n A 1 72 SER 72 72 72 SER SER A . n A 1 73 SER 73 73 73 SER SER A . n A 1 74 ASN 74 74 74 ASN ASN A . n A 1 75 LYS 75 75 75 LYS LYS A . n A 1 76 MET 76 76 76 MET MET A . n A 1 77 VAL 77 77 77 VAL VAL A . n A 1 78 ILE 78 78 78 ILE ILE A . n A 1 79 ASN 79 79 79 ASN ASN A . n A 1 80 ASP 80 80 80 ASP ASP A . n A 1 81 ASN 81 81 81 ASN ASN A . n A 1 82 SER 82 82 82 SER SER A . n A 1 83 ASP 83 83 83 ASP ASP A . n A 1 84 THR 84 84 84 THR THR A . n A 1 85 GLY 85 85 85 GLY GLY A . n A 1 86 LEU 86 86 86 LEU LEU A . n A 1 87 GLY 87 87 87 GLY GLY A . n A 1 88 ARG 88 88 88 ARG ARG A . n A 1 89 ILE 89 89 89 ILE ILE A . n A 1 90 ASP 90 90 90 ASP ASP A . n A 1 91 TYR 91 91 91 TYR TYR A . n A 1 92 ILE 92 92 92 ILE ILE A . n A 1 93 ILE 93 93 93 ILE ILE A . n A 1 94 GLN 94 94 94 GLN GLN A . n A 1 95 GLN 95 95 95 GLN GLN A . n A 1 96 ALA 96 96 96 ALA ALA A . n A 1 97 ALA 97 97 97 ALA ALA A . n A 1 98 SER 98 98 98 SER SER A . n A 1 99 GLN 99 99 99 GLN GLN A . n A 1 100 ASP 100 100 100 ASP ASP A . n A 1 101 ILE 101 101 101 ILE ILE A . n A 1 102 LYS 102 102 102 LYS LYS A . n A 1 103 LEU 103 103 103 LEU LEU A . n A 1 104 ILE 104 104 104 ILE ILE A . n A 1 105 PHE 105 105 105 PHE PHE A . n A 1 106 THR 106 106 106 THR THR A . n A 1 107 LEU 107 107 107 LEU LEU A . n A 1 108 ASN 108 108 108 ASN ASN A . n A 1 109 ASN 109 109 109 ASN ASN A . n A 1 110 ASN 110 110 110 ASN ASN A . n A 1 111 TRP 111 111 111 TRP TRP A . n A 1 112 GLU 112 112 112 GLU GLU A . n A 1 113 ASP 113 113 113 ASP ASP A . n A 1 114 TYR 114 114 114 TYR TYR A . n A 1 115 GLY 115 115 115 GLY GLY A . n A 1 116 GLY 116 116 116 GLY GLY A . n A 1 117 MET 117 117 117 MET MET A . n A 1 118 ASP 118 118 118 ASP ASP A . n A 1 119 TYR 119 119 119 TYR TYR A . n A 1 120 TYR 120 120 120 TYR TYR A . n A 1 121 VAL 121 121 121 VAL VAL A . n A 1 122 LYS 122 122 122 LYS LYS A . n A 1 123 ASN 123 123 123 ASN ASN A . n A 1 124 PHE 124 124 124 PHE PHE A . n A 1 125 GLY 125 125 125 GLY GLY A . n A 1 126 GLY 126 126 126 GLY GLY A . n A 1 127 THR 127 127 127 THR THR A . n A 1 128 TYR 128 128 128 TYR TYR A . n A 1 129 HIS 129 129 129 HIS HIS A . n A 1 130 ASP 130 130 130 ASP ASP A . n A 1 131 ASP 131 131 131 ASP ASP A . n A 1 132 PHE 132 132 132 PHE PHE A . n A 1 133 TYR 133 133 133 TYR TYR A . n A 1 134 THR 134 134 134 THR THR A . n A 1 135 ASN 135 135 135 ASN ASN A . n A 1 136 THR 136 136 136 THR THR A . n A 1 137 GLU 137 137 137 GLU GLU A . n A 1 138 MET 138 138 138 MET MET A . n A 1 139 ILE 139 139 139 ILE ILE A . n A 1 140 ASP 140 140 140 ASP ASP A . n A 1 141 SER 141 141 141 SER SER A . n A 1 142 PHE 142 142 142 PHE PHE A . n A 1 143 LYS 143 143 143 LYS LYS A . n A 1 144 GLU 144 144 144 GLU GLU A . n A 1 145 TYR 145 145 145 TYR TYR A . n A 1 146 ILE 146 146 146 ILE ILE A . n A 1 147 SER 147 147 147 SER SER A . n A 1 148 HIS 148 148 148 HIS HIS A . n A 1 149 VAL 149 149 149 VAL VAL A . n A 1 150 LEU 150 150 150 LEU LEU A . n A 1 151 ASN 151 151 151 ASN ASN A . n A 1 152 ARG 152 152 152 ARG ARG A . n A 1 153 GLU 153 153 153 GLU GLU A . n A 1 154 ASN 154 154 154 ASN ASN A . n A 1 155 SER 155 155 155 SER SER A . n A 1 156 LEU 156 156 156 LEU LEU A . n A 1 157 THR 157 157 157 THR THR A . n A 1 158 GLY 158 158 158 GLY GLY A . n A 1 159 VAL 159 159 159 VAL VAL A . n A 1 160 LYS 160 160 160 LYS LYS A . n A 1 161 TYR 161 161 161 TYR TYR A . n A 1 162 LYS 162 162 162 LYS LYS A . n A 1 163 ASP 163 163 163 ASP ASP A . n A 1 164 ASP 164 164 164 ASP ASP A . n A 1 165 PRO 165 165 165 PRO PRO A . n A 1 166 THR 166 166 166 THR THR A . n A 1 167 ILE 167 167 167 ILE ILE A . n A 1 168 PHE 168 168 168 PHE PHE A . n A 1 169 GLY 169 169 169 GLY GLY A . n A 1 170 TRP 170 170 170 TRP TRP A . n A 1 171 GLU 171 171 171 GLU GLU A . n A 1 172 ILE 172 172 172 ILE ILE A . n A 1 173 ALA 173 173 173 ALA ALA A . n A 1 174 ASN 174 174 174 ASN ASN A . n A 1 175 GLU 175 175 175 GLU GLU A . n A 1 176 PRO 176 176 176 PRO PRO A . n A 1 177 ARG 177 177 177 ARG ARG A . n A 1 178 CYS 178 178 178 CYS CYS A . n A 1 179 VAL 179 179 179 VAL VAL A . n A 1 180 GLY 180 180 180 GLY GLY A . n A 1 181 SER 181 181 181 SER SER A . n A 1 182 GLY 182 182 182 GLY GLY A . n A 1 183 ASP 183 183 183 ASP ASP A . n A 1 184 PHE 184 184 184 PHE PHE A . n A 1 185 PRO 185 185 185 PRO PRO A . n A 1 186 ALA 186 186 186 ALA ALA A . n A 1 187 SER 187 187 187 SER SER A . n A 1 188 SER 188 188 188 SER SER A . n A 1 189 ASN 189 189 189 ASN ASN A . n A 1 190 CYS 190 190 190 CYS CYS A . n A 1 191 SER 191 191 191 SER SER A . n A 1 192 THR 192 192 192 THR THR A . n A 1 193 THR 193 193 193 THR THR A . n A 1 194 VAL 194 194 194 VAL VAL A . n A 1 195 THR 195 195 195 THR THR A . n A 1 196 THR 196 196 196 THR THR A . n A 1 197 ALA 197 197 197 ALA ALA A . n A 1 198 TRP 198 198 198 TRP TRP A . n A 1 199 ILE 199 199 199 ILE ILE A . n A 1 200 LYS 200 200 200 LYS LYS A . n A 1 201 GLU 201 201 201 GLU GLU A . n A 1 202 ILE 202 202 202 ILE ILE A . n A 1 203 SER 203 203 203 SER SER A . n A 1 204 GLU 204 204 204 GLU GLU A . n A 1 205 TYR 205 205 205 TYR TYR A . n A 1 206 ILE 206 206 206 ILE ILE A . n A 1 207 LYS 207 207 207 LYS LYS A . n A 1 208 SER 208 208 208 SER SER A . n A 1 209 ILE 209 209 209 ILE ILE A . n A 1 210 ASP 210 210 210 ASP ASP A . n A 1 211 SER 211 211 211 SER SER A . n A 1 212 ASN 212 212 212 ASN ASN A . n A 1 213 HIS 213 213 213 HIS HIS A . n A 1 214 LEU 214 214 214 LEU LEU A . n A 1 215 VAL 215 215 215 VAL VAL A . n A 1 216 ALA 216 216 216 ALA ALA A . n A 1 217 VAL 217 217 217 VAL VAL A . n A 1 218 GLY 218 218 218 GLY GLY A . n A 1 219 ASP 219 219 219 ASP ASP A . n A 1 220 GLU 220 220 220 GLU GLU A . n A 1 221 GLY 221 221 221 GLY GLY A . n A 1 222 PHE 222 222 222 PHE PHE A . n A 1 223 PHE 223 223 223 PHE PHE A . n A 1 224 ASN 224 224 224 ASN ASN A . n A 1 225 ARG 225 225 225 ARG ARG A . n A 1 226 LYS 226 226 226 LYS LYS A . n A 1 227 GLY 227 227 227 GLY GLY A . n A 1 228 GLU 228 228 228 GLU GLU A . n A 1 229 SER 229 229 229 SER SER A . n A 1 230 ASP 230 230 230 ASP ASP A . n A 1 231 TYR 231 231 231 TYR TYR A . n A 1 232 GLU 232 232 232 GLU GLU A . n A 1 233 TYR 233 233 233 TYR TYR A . n A 1 234 ASN 234 234 234 ASN ASN A . n A 1 235 GLY 235 235 235 GLY GLY A . n A 1 236 GLY 236 236 236 GLY GLY A . n A 1 237 SER 237 237 237 SER SER A . n A 1 238 GLY 238 238 238 GLY GLY A . n A 1 239 MET 239 239 239 MET MET A . n A 1 240 ASP 240 240 240 ASP ASP A . n A 1 241 PHE 241 241 241 PHE PHE A . n A 1 242 ASP 242 242 242 ASP ASP A . n A 1 243 ALA 243 243 243 ALA ALA A . n A 1 244 ILE 244 244 244 ILE ILE A . n A 1 245 LEU 245 245 245 LEU LEU A . n A 1 246 ALA 246 246 246 ALA ALA A . n A 1 247 LEU 247 247 247 LEU LEU A . n A 1 248 SER 248 248 248 SER SER A . n A 1 249 SER 249 249 249 SER SER A . n A 1 250 ILE 250 250 250 ILE ILE A . n A 1 251 ASP 251 251 251 ASP ASP A . n A 1 252 PHE 252 252 252 PHE PHE A . n A 1 253 GLY 253 253 253 GLY GLY A . n A 1 254 THR 254 254 254 THR THR A . n A 1 255 PHE 255 255 255 PHE PHE A . n A 1 256 HIS 256 256 256 HIS HIS A . n A 1 257 LEU 257 257 257 LEU LEU A . n A 1 258 TYR 258 258 258 TYR TYR A . n A 1 259 PRO 259 259 259 PRO PRO A . n A 1 260 GLU 260 260 260 GLU GLU A . n A 1 261 ALA 261 261 261 ALA ALA A . n A 1 262 TRP 262 262 262 TRP TRP A . n A 1 263 SER 263 263 263 SER SER A . n A 1 264 LYS 264 264 264 LYS LYS A . n A 1 265 GLY 265 265 265 GLY GLY A . n A 1 266 THR 266 266 266 THR THR A . n A 1 267 ASP 267 267 267 ASP ASP A . n A 1 268 SER 268 268 268 SER SER A . n A 1 269 SER 269 269 269 SER SER A . n A 1 270 TRP 270 270 270 TRP TRP A . n A 1 271 SER 271 271 271 SER SER A . n A 1 272 VAL 272 272 272 VAL VAL A . n A 1 273 GLN 273 273 273 GLN GLN A . n A 1 274 TRP 274 274 274 TRP TRP A . n A 1 275 ILE 275 275 275 ILE ILE A . n A 1 276 LYS 276 276 276 LYS LYS A . n A 1 277 ASP 277 277 277 ASP ASP A . n A 1 278 HIS 278 278 278 HIS HIS A . n A 1 279 ALA 279 279 279 ALA ALA A . n A 1 280 ALA 280 280 280 ALA ALA A . n A 1 281 ALA 281 281 281 ALA ALA A . n A 1 282 GLN 282 282 282 GLN GLN A . n A 1 283 ALA 283 283 283 ALA ALA A . n A 1 284 ASP 284 284 284 ASP ASP A . n A 1 285 ALA 285 285 285 ALA ALA A . n A 1 286 ASP 286 286 286 ASP ASP A . n A 1 287 LYS 287 287 287 LYS LYS A . n A 1 288 PRO 288 288 288 PRO PRO A . n A 1 289 VAL 289 289 289 VAL VAL A . n A 1 290 ILE 290 290 290 ILE ILE A . n A 1 291 MET 291 291 291 MET MET A . n A 1 292 GLU 292 292 292 GLU GLU A . n A 1 293 GLU 293 293 293 GLU GLU A . n A 1 294 TYR 294 294 294 TYR TYR A . n A 1 295 GLY 295 295 295 GLY GLY A . n A 1 296 LEU 296 296 296 LEU LEU A . n A 1 297 SER 297 297 297 SER SER A . n A 1 298 THR 298 298 298 THR THR A . n A 1 299 ASP 299 299 299 ASP ASP A . n A 1 300 ALA 300 300 300 ALA ALA A . n A 1 301 LEU 301 301 301 LEU LEU A . n A 1 302 ARG 302 302 302 ARG ARG A . n A 1 303 VAL 303 303 303 VAL VAL A . n A 1 304 ALA 304 304 304 ALA ALA A . n A 1 305 GLN 305 305 305 GLN GLN A . n A 1 306 TYR 306 306 306 TYR TYR A . n A 1 307 PRO 307 307 307 PRO PRO A . n A 1 308 VAL 308 308 308 VAL VAL A . n A 1 309 TRP 309 309 309 TRP TRP A . n A 1 310 GLN 310 310 310 GLN GLN A . n A 1 311 GLY 311 311 311 GLY GLY A . n A 1 312 THR 312 312 312 THR THR A . n A 1 313 VAL 313 313 313 VAL VAL A . n A 1 314 GLU 314 314 314 GLU GLU A . n A 1 315 ASP 315 315 315 ASP ASP A . n A 1 316 GLU 316 316 316 GLU GLU A . n A 1 317 ASP 317 317 317 ASP ASP A . n A 1 318 LEU 318 318 318 LEU LEU A . n A 1 319 ALA 319 319 319 ALA ALA A . n A 1 320 ALA 320 320 320 ALA ALA A . n A 1 321 ASP 321 321 321 ASP ASP A . n A 1 322 ALA 322 322 322 ALA ALA A . n A 1 323 PHE 323 323 323 PHE PHE A . n A 1 324 TRP 324 324 324 TRP TRP A . n A 1 325 GLN 325 325 325 GLN GLN A . n A 1 326 ILE 326 326 326 ILE ILE A . n A 1 327 ALA 327 327 327 ALA ALA A . n A 1 328 VAL 328 328 328 VAL VAL A . n A 1 329 PRO 329 329 329 PRO PRO A . n A 1 330 CYS 330 330 330 CYS CYS A . n A 1 331 SER 331 331 331 SER SER A . n A 1 332 THR 332 332 332 THR THR A . n A 1 333 MET 333 333 333 MET MET A . n A 1 334 ASP 334 334 334 ASP ASP A . n A 1 335 GLY 335 335 335 GLY GLY A . n A 1 336 PHE 336 336 336 PHE PHE A . n A 1 337 GLY 337 337 337 GLY GLY A . n A 1 338 ILE 338 338 338 ILE ILE A . n A 1 339 CYS 339 339 339 CYS CYS A . n A 1 340 ALA 340 340 340 ALA ALA A . n A 1 341 SER 341 341 341 SER SER A . n A 1 342 ASP 342 342 342 ASP ASP A . n A 1 343 ASN 343 343 343 ASN ASN A . n A 1 344 ASP 344 344 344 ASP ASP A . n A 1 345 ILE 345 345 345 ILE ILE A . n A 1 346 ALA 346 346 346 ALA ALA A . n A 1 347 THR 347 347 347 THR THR A . n A 1 348 THR 348 348 348 THR THR A . n A 1 349 VAL 349 349 349 VAL VAL A . n A 1 350 THR 350 350 350 THR THR A . n A 1 351 ASN 351 351 351 ASN ASN A . n A 1 352 HIS 352 352 352 HIS HIS A . n A 1 353 ALA 353 353 353 ALA ALA A . n A 1 354 ASP 354 354 354 ASP ASP A . n A 1 355 ALA 355 355 355 ALA ALA A . n A 1 356 MET 356 356 356 MET MET A . n A 1 357 ALA 357 357 357 ALA ALA A . n A 1 358 LYS 358 358 358 LYS LYS A . n A 1 359 LYS 359 359 359 LYS LYS A . n # _pdbx_nonpoly_scheme.asym_id B _pdbx_nonpoly_scheme.entity_id 2 _pdbx_nonpoly_scheme.mon_id SO4 _pdbx_nonpoly_scheme.ndb_seq_num 1 _pdbx_nonpoly_scheme.pdb_seq_num 401 _pdbx_nonpoly_scheme.auth_seq_num 1 _pdbx_nonpoly_scheme.pdb_mon_id SO4 _pdbx_nonpoly_scheme.auth_mon_id SO4 _pdbx_nonpoly_scheme.pdb_strand_id A _pdbx_nonpoly_scheme.pdb_ins_code . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2014-06-11 2 'Structure model' 1 1 2014-11-05 # loop_ _pdbx_audit_revision_details.ordinal _pdbx_audit_revision_details.revision_ordinal _pdbx_audit_revision_details.data_content_type _pdbx_audit_revision_details.provider _pdbx_audit_revision_details.type _pdbx_audit_revision_details.description 1 1 'Structure model' repository 'Initial release' ? 2 2 'Structure model' repository Obsolete ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group Other # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal HKL-2000 'data collection' . ? 1 PHENIX 'model building' . ? 2 REFMAC refinement 5.0 ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 O _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 GLU _pdbx_validate_close_contact.auth_seq_id_1 22 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 ASP _pdbx_validate_close_contact.auth_seq_id_2 321 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.06 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 LEU A 14 ? ? -88.77 -74.96 2 1 ASP A 15 ? ? -97.57 -101.61 3 1 GLU A 22 ? ? -88.60 -79.93 4 1 ALA A 26 ? ? -158.66 69.46 5 1 ASN A 58 ? ? -175.80 88.44 6 1 SER A 61 ? ? -140.69 33.73 7 1 TRP A 262 ? ? -117.44 -163.24 8 1 LYS A 264 ? ? -178.41 134.57 9 1 THR A 266 ? ? -102.95 41.75 10 1 ASP A 267 ? ? -156.83 -23.22 11 1 MET A 333 ? ? 52.33 -105.71 12 1 VAL A 349 ? ? -139.05 -46.53 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A ASP 15 ? OD1 ? A ASP 15 OD1 2 1 Y 1 A ASP 15 ? OD2 ? A ASP 15 OD2 3 1 Y 1 A ASP 100 ? OD1 ? A ASP 100 OD1 4 1 Y 1 A GLU 112 ? OE1 ? A GLU 112 OE1 5 1 Y 1 A GLU 112 ? OE2 ? A GLU 112 OE2 6 1 Y 1 A ASP 113 ? OD2 ? A ASP 113 OD2 7 1 Y 1 A GLU 137 ? OE1 ? A GLU 137 OE1 8 1 Y 1 A GLU 137 ? OE2 ? A GLU 137 OE2 9 1 Y 1 A GLU 144 ? CG ? A GLU 144 CG 10 1 Y 1 A GLU 144 ? CD ? A GLU 144 CD 11 1 Y 1 A GLU 144 ? OE1 ? A GLU 144 OE1 12 1 Y 1 A GLU 144 ? OE2 ? A GLU 144 OE2 13 1 Y 1 A ASN 189 ? CG ? A ASN 189 CG 14 1 Y 1 A ASN 189 ? OD1 ? A ASN 189 OD1 15 1 Y 1 A ASN 189 ? ND2 ? A ASN 189 ND2 16 1 Y 1 A LYS 226 ? CG ? A LYS 226 CG 17 1 Y 1 A LYS 226 ? CD ? A LYS 226 CD 18 1 Y 1 A LYS 226 ? CE ? A LYS 226 CE 19 1 Y 1 A LYS 226 ? NZ ? A LYS 226 NZ 20 1 Y 1 A SER 263 ? OG ? A SER 263 OG 21 1 Y 1 A LYS 264 ? CG ? A LYS 264 CG 22 1 Y 1 A LYS 264 ? CD ? A LYS 264 CD 23 1 Y 1 A LYS 264 ? CE ? A LYS 264 CE 24 1 Y 1 A LYS 264 ? NZ ? A LYS 264 NZ 25 1 Y 1 A VAL 328 ? CG1 ? A VAL 328 CG1 26 1 Y 1 A VAL 328 ? CG2 ? A VAL 328 CG2 27 1 Y 1 A THR 332 ? OG1 ? A THR 332 OG1 28 1 Y 1 A THR 332 ? CG2 ? A THR 332 CG2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A ALA 1 ? A ALA 1 2 1 Y 1 A SER 2 ? A SER 2 # _pdbx_entity_nonpoly.entity_id 2 _pdbx_entity_nonpoly.name 'SULFATE ION' _pdbx_entity_nonpoly.comp_id SO4 #