HEADER HYDROLASE 08-JUN-13 4L4O TITLE THE CRYSTAL STRUCTURE OF CBXYN10B IN NATIVE FORM COMPND MOL_ID: 1; COMPND 2 MOLECULE: ENDO-1,4-BETA-XYLANASE; COMPND 3 CHAIN: A; COMPND 4 EC: 3.2.1.8; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDICELLULOSIRUPTOR BESCII; SOURCE 3 ORGANISM_TAXID: 521460; SOURCE 4 STRAIN: DSM 6725; SOURCE 5 GENE: ATHE_0185; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS GH10 FAMILY, XYLANASE, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR J.AN,Y.FENG,G.WU REVDAT 3 20-MAR-24 4L4O 1 REMARK SEQADV REVDAT 2 15-NOV-17 4L4O 1 REMARK REVDAT 1 07-MAY-14 4L4O 0 JRNL AUTH J.AN,Y.FENG,G.WU JRNL TITL CRYSTAL STRUCTURE OF CBXYN10B FROM CALDICELLULOSIRUPTOR JRNL TITL 2 BESCII AND ITS MUTANT(E139A) IN COMPLEX WITH XYLOTRIOSE JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 50.00 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.8 REMARK 3 NUMBER OF REFLECTIONS : 24052 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.188 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1292 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.10 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1576 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.34 REMARK 3 BIN R VALUE (WORKING SET) : 0.2120 REMARK 3 BIN FREE R VALUE SET COUNT : 88 REMARK 3 BIN FREE R VALUE : 0.2580 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2776 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 87 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 32.11 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.79000 REMARK 3 B22 (A**2) : 2.02000 REMARK 3 B33 (A**2) : -2.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.188 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.170 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.106 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.489 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.930 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2852 ; 0.021 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3855 ; 2.115 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 329 ; 7.034 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 150 ;33.524 ;23.933 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 520 ;16.305 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 20 ;17.878 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 413 ; 0.149 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2160 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 10 A 339 REMARK 3 ORIGIN FOR THE GROUP (A): 9.9365 -11.0559 -18.3987 REMARK 3 T TENSOR REMARK 3 T11: 0.0295 T22: 0.0381 REMARK 3 T33: 0.0370 T12: 0.0244 REMARK 3 T13: 0.0108 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 0.2247 L22: 0.5393 REMARK 3 L33: 0.5395 L12: -0.0587 REMARK 3 L13: 0.2699 L23: -0.3214 REMARK 3 S TENSOR REMARK 3 S11: 0.0248 S12: 0.0309 S13: 0.0417 REMARK 3 S21: -0.1207 S22: -0.0816 S23: -0.0314 REMARK 3 S31: 0.0779 S32: 0.0780 S33: 0.0568 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 401 A 401 REMARK 3 ORIGIN FOR THE GROUP (A): 6.3411 -6.2384 -18.0144 REMARK 3 T TENSOR REMARK 3 T11: 0.1384 T22: 0.1766 REMARK 3 T33: 0.2031 T12: 0.0679 REMARK 3 T13: 0.0581 T23: -0.0045 REMARK 3 L TENSOR REMARK 3 L11: 205.7394 L22: 55.3440 REMARK 3 L33: 0.9057 L12: 23.0144 REMARK 3 L13: -9.1115 L23: 4.1285 REMARK 3 S TENSOR REMARK 3 S11: 0.9259 S12: -1.1750 S13: 2.8198 REMARK 3 S21: 0.1019 S22: -0.8959 S23: 0.7514 REMARK 3 S31: -0.0383 S32: -0.0281 S33: -0.0299 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 536 REMARK 3 ORIGIN FOR THE GROUP (A): 5.0951 -10.2040 -11.5601 REMARK 3 T TENSOR REMARK 3 T11: 0.0067 T22: 0.0127 REMARK 3 T33: 0.0266 T12: 0.0071 REMARK 3 T13: 0.0038 T23: -0.0019 REMARK 3 L TENSOR REMARK 3 L11: 0.2683 L22: 0.5756 REMARK 3 L33: 0.6349 L12: 0.0039 REMARK 3 L13: 0.1690 L23: -0.2398 REMARK 3 S TENSOR REMARK 3 S11: 0.0080 S12: -0.0184 S13: 0.0497 REMARK 3 S21: -0.0360 S22: -0.0697 S23: 0.0349 REMARK 3 S31: 0.0036 S32: 0.0168 S33: 0.0617 REMARK 3 REMARK 3 TLS GROUP : 4 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 537 A 567 REMARK 3 ORIGIN FOR THE GROUP (A): 5.4462 -9.9843 -16.4371 REMARK 3 T TENSOR REMARK 3 T11: 0.0199 T22: 0.0216 REMARK 3 T33: 0.0129 T12: 0.0073 REMARK 3 T13: -0.0027 T23: 0.0143 REMARK 3 L TENSOR REMARK 3 L11: 0.0065 L22: 0.7599 REMARK 3 L33: 0.2003 L12: -0.0101 REMARK 3 L13: 0.0352 L23: -0.1331 REMARK 3 S TENSOR REMARK 3 S11: 0.0028 S12: 0.0073 S13: 0.0040 REMARK 3 S21: -0.1116 S22: -0.0196 S23: 0.0391 REMARK 3 S31: 0.0442 S32: 0.0443 S33: 0.0168 REMARK 3 REMARK 3 TLS GROUP : 5 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 568 A 587 REMARK 3 ORIGIN FOR THE GROUP (A): 7.6799 -9.9490 -16.1592 REMARK 3 T TENSOR REMARK 3 T11: 0.1221 T22: 0.0585 REMARK 3 T33: 0.1928 T12: 0.0359 REMARK 3 T13: 0.0016 T23: 0.0256 REMARK 3 L TENSOR REMARK 3 L11: 0.1080 L22: 0.5089 REMARK 3 L33: 0.6726 L12: -0.0646 REMARK 3 L13: 0.1337 L23: -0.5666 REMARK 3 S TENSOR REMARK 3 S11: -0.0241 S12: -0.0120 S13: 0.1197 REMARK 3 S21: -0.0726 S22: -0.0651 S23: -0.0281 REMARK 3 S31: 0.0674 S32: 0.0469 S33: 0.0893 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4L4O COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 19-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080176. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-DEC-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 25400 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 14.10 REMARK 200 R MERGE (I) : 0.13700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.05 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.12 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 14.20 REMARK 200 R MERGE FOR SHELL (I) : 0.43500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.89 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25% PEG 3350, 0.1M TRIS-HCL, PH 8.5, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 21.35050 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 57.97950 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 39.40050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 57.97950 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 21.35050 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 39.40050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLU A 3 REMARK 465 ASP A 4 REMARK 465 TYR A 5 REMARK 465 TYR A 6 REMARK 465 GLU A 7 REMARK 465 LYS A 8 REMARK 465 SER A 9 REMARK 465 HIS A 340 REMARK 465 HIS A 341 REMARK 465 HIS A 342 REMARK 465 HIS A 343 REMARK 465 HIS A 344 REMARK 465 HIS A 345 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LEU A 338 CG CD1 CD2 REMARK 470 GLU A 339 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 128 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 ASP A 129 CB - CG - OD1 ANGL. DEV. = 6.5 DEGREES REMARK 500 ASP A 143 CB - CG - OD1 ANGL. DEV. = 6.2 DEGREES REMARK 500 LEU A 203 CB - CG - CD1 ANGL. DEV. = -11.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 103 -111.23 45.92 REMARK 500 ARG A 314 -166.74 -106.39 REMARK 500 LEU A 319 -166.35 -117.84 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 144 A 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4L4P RELATED DB: PDB DBREF 4L4O A 1 337 UNP B9MMA5 B9MMA5_CALBD 1 337 SEQADV 4L4O LEU A 338 UNP B9MMA5 EXPRESSION TAG SEQADV 4L4O GLU A 339 UNP B9MMA5 EXPRESSION TAG SEQADV 4L4O HIS A 340 UNP B9MMA5 EXPRESSION TAG SEQADV 4L4O HIS A 341 UNP B9MMA5 EXPRESSION TAG SEQADV 4L4O HIS A 342 UNP B9MMA5 EXPRESSION TAG SEQADV 4L4O HIS A 343 UNP B9MMA5 EXPRESSION TAG SEQADV 4L4O HIS A 344 UNP B9MMA5 EXPRESSION TAG SEQADV 4L4O HIS A 345 UNP B9MMA5 EXPRESSION TAG SEQRES 1 A 345 MET SER GLU ASP TYR TYR GLU LYS SER THR VAL SER LEU SEQRES 2 A 345 THR GLU LYS TYR LYS GLU PHE PHE LYS ILE GLY ALA ALA SEQRES 3 A 345 VAL THR VAL LYS ASP PHE GLU GLY ILE HIS GLY ARG ILE SEQRES 4 A 345 LEU THR LYS HIS PHE ASN SER LEU THR PRO GLU ASN ASP SEQRES 5 A 345 MET LYS PHE GLU ARG ILE HIS PRO LYS GLU ASP PHE TYR SEQRES 6 A 345 ASN PHE GLU ALA THR ASP LYS ILE LYS ASP PHE ALA LEU SEQRES 7 A 345 LYS HIS ASN MET GLN LEU ARG GLY HIS THR LEU VAL TRP SEQRES 8 A 345 HIS ASN GLN THR PRO GLU TRP VAL PHE ARG ASP ASN ASP SEQRES 9 A 345 LYS GLU ALA PRO LYS GLU LEU VAL ILE GLU ARG LEU ARG SEQRES 10 A 345 GLU HIS ILE LYS THR ILE CYS THR ARG TYR ARG ASP VAL SEQRES 11 A 345 VAL TYR SER TRP ASP VAL VAL ASN GLU ALA VAL GLU ASP SEQRES 12 A 345 LYS THR ASP VAL LEU LEU ARG ASP SER LYS TRP ARG ARG SEQRES 13 A 345 ILE ILE GLY ASP ASP TYR ILE LYS ILE ALA PHE GLU ILE SEQRES 14 A 345 ALA LYS LYS TYR THR GLY ASN GLY LYS LEU PHE TYR ASN SEQRES 15 A 345 ASP TYR ASN ASN GLU MET PRO TYR LYS LEU GLU LYS THR SEQRES 16 A 345 TYR LYS VAL LEU LYS SER LEU LEU GLU GLU GLY THR PRO SEQRES 17 A 345 ILE ASP GLY VAL GLY ILE GLN ALA HIS TRP ASN ILE TRP SEQRES 18 A 345 ASP LYS ASN LEU ILE ASP ASN LEU LYS ARG ALA ILE GLU SEQRES 19 A 345 THR TYR ALA SER LEU GLY LEU GLU ILE GLN ILE THR GLU SEQRES 20 A 345 LEU ASP ILE SER VAL PHE GLU PHE GLU ASP ARG ARG THR SEQRES 21 A 345 ASP LEU LEU GLU PRO THR GLU GLU MET VAL GLU LEU GLN SEQRES 22 A 345 ALA LYS VAL TYR GLU ASP VAL PHE ARG VAL PHE ARG GLU SEQRES 23 A 345 TYR ARG ASP VAL ILE THR SER VAL THR LEU TRP GLY ILE SEQRES 24 A 345 SER ASP ARG HIS THR TRP LYS ASP ASN PHE PRO VAL ILE SEQRES 25 A 345 GLY ARG LYS ASP TRP PRO LEU LEU PHE ASP ILE ASP GLY SEQRES 26 A 345 LYS PRO LYS LYS ALA PHE PHE ARG ILE ILE ASP PHE LEU SEQRES 27 A 345 GLU HIS HIS HIS HIS HIS HIS HET 144 A 401 8 HETNAM 144 TRIS-HYDROXYMETHYL-METHYL-AMMONIUM FORMUL 2 144 C4 H12 N O3 1+ FORMUL 3 HOH *87(H2 O) HELIX 1 1 SER A 12 TYR A 17 1 6 HELIX 2 2 THR A 28 PHE A 32 5 5 HELIX 3 3 GLU A 33 PHE A 44 1 12 HELIX 4 4 LYS A 54 HIS A 59 1 6 HELIX 5 5 PHE A 67 HIS A 80 1 14 HELIX 6 6 PRO A 96 VAL A 99 5 4 HELIX 7 7 PRO A 108 ARG A 128 1 21 HELIX 8 8 SER A 152 GLY A 159 1 8 HELIX 9 9 ASP A 161 THR A 174 1 14 HELIX 10 10 MET A 188 GLU A 205 1 18 HELIX 11 11 ASN A 224 SER A 238 1 15 HELIX 12 12 THR A 266 TYR A 287 1 22 HELIX 13 13 THR A 304 ASN A 308 5 5 HELIX 14 14 LYS A 328 ILE A 335 1 8 SHEET 1 A10 HIS A 217 ASN A 219 0 SHEET 2 A10 GLU A 242 SER A 251 1 O SER A 251 N TRP A 218 SHEET 3 A10 ILE A 291 LEU A 296 1 O THR A 295 N ILE A 245 SHEET 4 A10 LYS A 22 VAL A 27 1 N GLY A 24 O VAL A 294 SHEET 5 A10 SER A 46 PRO A 49 1 O THR A 48 N VAL A 27 SHEET 6 A10 GLN A 83 TRP A 91 1 O ARG A 85 N LEU A 47 SHEET 7 A10 VAL A 131 ASN A 138 1 O ASP A 135 N GLY A 86 SHEET 8 A10 LYS A 178 ASP A 183 1 O PHE A 180 N TRP A 134 SHEET 9 A10 GLY A 211 ILE A 214 1 O GLY A 213 N TYR A 181 SHEET 10 A10 GLU A 242 SER A 251 1 O GLN A 244 N ILE A 214 SHEET 1 B 2 ARG A 101 ASP A 102 0 SHEET 2 B 2 LYS A 105 GLU A 106 -1 O LYS A 105 N ASP A 102 CISPEP 1 HIS A 87 THR A 88 0 -2.12 CISPEP 2 PHE A 309 PRO A 310 0 7.26 SITE 1 AC1 9 LYS A 54 HIS A 87 TRP A 91 ASN A 138 SITE 2 AC1 9 GLU A 139 GLN A 215 HIS A 217 GLU A 247 SITE 3 AC1 9 HOH A 554 CRYST1 42.701 78.801 115.959 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.023419 0.000000 0.000000 0.00000 SCALE2 0.000000 0.012690 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008624 0.00000