data_4L58 # _entry.id 4L58 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.279 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4L58 RCSB RCSB080196 WWPDB D_1000080196 # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4L58 _pdbx_database_status.recvd_initial_deposition_date 2013-06-10 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Tong, Q.' 1 'Ali, M.' 2 'Kutateladze, T.G.' 3 # _citation.id primary _citation.title 'Molecular basis for chromatin binding and regulation of MLL5.' _citation.journal_abbrev Proc.Natl.Acad.Sci.USA _citation.journal_volume 110 _citation.page_first 11296 _citation.page_last 11301 _citation.year 2013 _citation.journal_id_ASTM PNASA6 _citation.country US _citation.journal_id_ISSN 0027-8424 _citation.journal_id_CSD 0040 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 23798402 _citation.pdbx_database_id_DOI 10.1073/pnas.1310156110 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Ali, M.' 1 primary 'Rincon-Arano, H.' 2 primary 'Zhao, W.' 3 primary 'Rothbart, S.B.' 4 primary 'Tong, Q.' 5 primary 'Parkhurst, S.M.' 6 primary 'Strahl, B.D.' 7 primary 'Deng, L.W.' 8 primary 'Groudine, M.' 9 primary 'Kutateladze, T.G.' 10 # _cell.entry_id 4L58 _cell.length_a 31.286 _cell.length_b 43.638 _cell.length_c 52.856 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 4 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4L58 _symmetry.space_group_name_H-M 'P 21 21 21' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 19 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Histone-lysine N-methyltransferase MLL5' 8186.495 1 2.1.1.43 ? 'PHD-type zinc finger domain residues 117-181' ? 2 polymer syn 'Histone H3 peptide' 1350.568 1 ? ? ? ? 3 non-polymer syn 'ZINC ION' 65.409 2 ? ? ? ? 4 water nat water 18.015 125 ? ? ? ? # loop_ _entity_name_com.entity_id _entity_name_com.name 1 'Lysine N-methyltransferase 2E, KMT2E, Myeloid/lymphoid or mixed-lineage leukemia protein 5' 2 'H3K4me3 peptide' # loop_ _entity_poly.entity_id _entity_poly.type _entity_poly.nstd_linkage _entity_poly.nstd_monomer _entity_poly.pdbx_seq_one_letter_code _entity_poly.pdbx_seq_one_letter_code_can _entity_poly.pdbx_strand_id _entity_poly.pdbx_target_identifier 1 'polypeptide(L)' no no GSHMDVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDKERAVLLQRRKR GSHMDVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDKERAVLLQRRKR A ? 2 'polypeptide(L)' no yes 'ART(M3L)QTARKSTG' ARTKQTARKSTG B ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 SER n 1 3 HIS n 1 4 MET n 1 5 ASP n 1 6 VAL n 1 7 THR n 1 8 ARG n 1 9 CYS n 1 10 ILE n 1 11 CYS n 1 12 GLY n 1 13 PHE n 1 14 THR n 1 15 HIS n 1 16 ASP n 1 17 ASP n 1 18 GLY n 1 19 TYR n 1 20 MET n 1 21 ILE n 1 22 CYS n 1 23 CYS n 1 24 ASP n 1 25 LYS n 1 26 CYS n 1 27 SER n 1 28 VAL n 1 29 TRP n 1 30 GLN n 1 31 HIS n 1 32 ILE n 1 33 ASP n 1 34 CYS n 1 35 MET n 1 36 GLY n 1 37 ILE n 1 38 ASP n 1 39 ARG n 1 40 GLN n 1 41 HIS n 1 42 ILE n 1 43 PRO n 1 44 ASP n 1 45 THR n 1 46 TYR n 1 47 LEU n 1 48 CYS n 1 49 GLU n 1 50 ARG n 1 51 CYS n 1 52 GLN n 1 53 PRO n 1 54 ARG n 1 55 ASN n 1 56 LEU n 1 57 ASP n 1 58 LYS n 1 59 GLU n 1 60 ARG n 1 61 ALA n 1 62 VAL n 1 63 LEU n 1 64 LEU n 1 65 GLN n 1 66 ARG n 1 67 ARG n 1 68 LYS n 1 69 ARG n 2 1 ALA n 2 2 ARG n 2 3 THR n 2 4 M3L n 2 5 GLN n 2 6 THR n 2 7 ALA n 2 8 ARG n 2 9 LYS n 2 10 SER n 2 11 THR n 2 12 GLY n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'MLL5, KMT2E' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _pdbx_entity_src_syn.entity_id 2 _pdbx_entity_src_syn.pdbx_src_id 1 _pdbx_entity_src_syn.pdbx_alt_source_flag sample _pdbx_entity_src_syn.pdbx_beg_seq_num ? _pdbx_entity_src_syn.pdbx_end_seq_num ? _pdbx_entity_src_syn.organism_scientific 'Homo sapiens' _pdbx_entity_src_syn.organism_common_name human _pdbx_entity_src_syn.ncbi_taxonomy_id 9606 _pdbx_entity_src_syn.details 'The modified peptide was synthesized.' # loop_ _struct_ref.id _struct_ref.db_name _struct_ref.db_code _struct_ref.pdbx_db_accession _struct_ref.entity_id _struct_ref.pdbx_seq_one_letter_code _struct_ref.pdbx_align_begin _struct_ref.pdbx_db_isoform 1 UNP MLL5_HUMAN Q8IZD2 1 DVTRCICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQPRNLDKERAVLLQRRKR 117 ? 2 PDB 4L58 4L58 2 ? ? ? # loop_ _struct_ref_seq.align_id _struct_ref_seq.ref_id _struct_ref_seq.pdbx_PDB_id_code _struct_ref_seq.pdbx_strand_id _struct_ref_seq.seq_align_beg _struct_ref_seq.pdbx_seq_align_beg_ins_code _struct_ref_seq.seq_align_end _struct_ref_seq.pdbx_seq_align_end_ins_code _struct_ref_seq.pdbx_db_accession _struct_ref_seq.db_align_beg _struct_ref_seq.pdbx_db_align_beg_ins_code _struct_ref_seq.db_align_end _struct_ref_seq.pdbx_db_align_end_ins_code _struct_ref_seq.pdbx_auth_seq_align_beg _struct_ref_seq.pdbx_auth_seq_align_end 1 1 4L58 A 5 ? 69 ? Q8IZD2 117 ? 181 ? 1 65 2 2 4L58 B 1 ? 12 ? 4L58 1 ? 12 ? 1 12 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4L58 GLY A 1 ? UNP Q8IZD2 ? ? 'EXPRESSION TAG' -3 1 1 4L58 SER A 2 ? UNP Q8IZD2 ? ? 'EXPRESSION TAG' -2 2 1 4L58 HIS A 3 ? UNP Q8IZD2 ? ? 'EXPRESSION TAG' -1 3 1 4L58 MET A 4 ? UNP Q8IZD2 ? ? 'EXPRESSION TAG' 0 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 M3L 'L-peptide linking' n N-TRIMETHYLLYSINE ? 'C9 H21 N2 O2 1' 189.275 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 ZN non-polymer . 'ZINC ION' ? 'Zn 2' 65.409 # _exptl.entry_id 4L58 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 1.89 _exptl_crystal.density_percent_sol 34.98 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, HANGING DROP' _exptl_crystal_grow.temp 291 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.4 _exptl_crystal_grow.pdbx_details '0.14 mM potassium acetate and 35 % PEG 3350, pH 7.4, VAPOR DIFFUSION, HANGING DROP, temperature 291K' _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type NOIR-1 _diffrn_detector.pdbx_collection_date 2012-11-18 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator 'double crystal' _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 1.000 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'ALS BEAMLINE 4.2.2' _diffrn_source.pdbx_synchrotron_site ALS _diffrn_source.pdbx_synchrotron_beamline 4.2.2 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 1.000 # _reflns.entry_id 4L58 _reflns.observed_criterion_sigma_I 2.0 _reflns.observed_criterion_sigma_F 2.0 _reflns.d_resolution_low 33 _reflns.d_resolution_high 1.48 _reflns.number_obs 22776 _reflns.number_all ? _reflns.percent_possible_obs 97 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate 9.64 _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.48 _reflns_shell.d_res_low 1.55 _reflns_shell.percent_possible_all 67.5 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value ? _reflns_shell.meanI_over_sigI_obs ? _reflns_shell.pdbx_redundancy ? _reflns_shell.percent_possible_obs ? _reflns_shell.number_unique_all ? _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4L58 _refine.ls_number_reflns_obs 22776 _refine.ls_number_reflns_all 22776 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.36 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 33 _refine.ls_d_res_high 1.480 _refine.ls_percent_reflns_obs 97.59 _refine.ls_R_factor_obs 0.1258 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1251 _refine.ls_R_factor_R_free 0.1402 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.00 _refine.ls_number_reflns_R_free 1138 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.08 _refine.pdbx_overall_phase_error 12.15 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 591 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 2 _refine_hist.number_atoms_solvent 125 _refine_hist.number_atoms_total 718 _refine_hist.d_res_high 1.480 _refine_hist.d_res_low 33 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.004 ? ? 599 ? 'X-RAY DIFFRACTION' f_angle_d 1.054 ? ? 804 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.979 ? ? 235 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.067 ? ? 86 ? 'X-RAY DIFFRACTION' f_plane_restr 0.003 ? ? 104 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.4797 1.5470 2400 0.1505 86.00 0.1624 . . 126 . . . . 'X-RAY DIFFRACTION' . 1.5470 1.6286 2734 0.1173 98.00 0.1545 . . 147 . . . . 'X-RAY DIFFRACTION' . 1.6286 1.7306 2716 0.1009 99.00 0.1411 . . 145 . . . . 'X-RAY DIFFRACTION' . 1.7306 1.8642 2730 0.1009 99.00 0.1306 . . 139 . . . . 'X-RAY DIFFRACTION' . 1.8642 2.0518 2772 0.1206 99.00 0.1342 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.0518 2.3487 2750 0.1230 100.00 0.1336 . . 143 . . . . 'X-RAY DIFFRACTION' . 2.3487 2.9588 2759 0.1311 100.00 0.1421 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.9588 33.6599 2777 0.1347 100.00 0.1401 . . 148 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4L58 _struct.title 'Crystal structure of the MLL5 PHD finger in complex with H3K4me3' _struct.pdbx_descriptor 'Histone-lysine N-methyltransferase MLL5 (E.C.2.1.1.43), histone3 peptide' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4L58 _struct_keywords.pdbx_keywords TRANSFERASE _struct_keywords.text TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 3 ? E N N 4 ? F N N 4 ? # _struct_biol.id 1 _struct_biol.details ? # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ILE A 32 ? GLY A 36 ? ILE A 28 GLY A 32 1 ? 5 HELX_P HELX_P2 2 ASP A 57 ? ARG A 67 ? ASP A 53 ARG A 63 1 ? 11 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? B THR 3 C ? ? ? 1_555 B M3L 4 N ? ? B THR 3 B M3L 4 1_555 ? ? ? ? ? ? ? 1.328 ? covale2 covale ? ? B M3L 4 C ? ? ? 1_555 B GLN 5 N ? ? B M3L 4 B GLN 5 1_555 ? ? ? ? ? ? ? 1.327 ? metalc1 metalc ? ? A HIS 31 ND1 ? ? ? 1_555 D ZN . ZN ? ? A HIS 27 A ZN 102 1_555 ? ? ? ? ? ? ? 2.090 ? metalc2 metalc ? ? A CYS 34 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 30 A ZN 102 1_555 ? ? ? ? ? ? ? 2.283 ? metalc3 metalc ? ? A CYS 26 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 22 A ZN 101 1_555 ? ? ? ? ? ? ? 2.284 ? metalc4 metalc ? ? A CYS 51 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 47 A ZN 101 1_555 ? ? ? ? ? ? ? 2.296 ? metalc5 metalc ? ? A CYS 9 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 5 A ZN 102 1_555 ? ? ? ? ? ? ? 2.307 ? metalc6 metalc ? ? A CYS 23 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 19 A ZN 101 1_555 ? ? ? ? ? ? ? 2.325 ? metalc7 metalc ? ? A CYS 11 SG ? ? ? 1_555 D ZN . ZN ? ? A CYS 7 A ZN 102 1_555 ? ? ? ? ? ? ? 2.331 ? metalc8 metalc ? ? A CYS 48 SG ? ? ? 1_555 C ZN . ZN ? ? A CYS 44 A ZN 101 1_555 ? ? ? ? ? ? ? 2.345 ? # loop_ _struct_conn_type.id _struct_conn_type.criteria _struct_conn_type.reference covale ? ? metalc ? ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 3 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 TRP A 29 ? HIS A 31 ? TRP A 25 HIS A 27 A 2 MET A 20 ? CYS A 22 ? MET A 16 CYS A 18 A 3 THR B 3 ? M3L B 4 ? THR B 3 M3L B 4 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 O GLN A 30 ? O GLN A 26 N ILE A 21 ? N ILE A 17 A 2 3 N MET A 20 ? N MET A 16 O M3L B 4 ? O M3L B 4 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 101' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE ZN A 102' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 4 CYS A 23 ? CYS A 19 . ? 1_555 ? 2 AC1 4 CYS A 26 ? CYS A 22 . ? 1_555 ? 3 AC1 4 CYS A 48 ? CYS A 44 . ? 1_555 ? 4 AC1 4 CYS A 51 ? CYS A 47 . ? 1_555 ? 5 AC2 4 CYS A 9 ? CYS A 5 . ? 1_555 ? 6 AC2 4 CYS A 11 ? CYS A 7 . ? 1_555 ? 7 AC2 4 HIS A 31 ? HIS A 27 . ? 1_555 ? 8 AC2 4 CYS A 34 ? CYS A 30 . ? 1_555 ? # _database_PDB_matrix.entry_id 4L58 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4L58 _atom_sites.fract_transf_matrix[1][1] 0.031963 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.022916 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.018919 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S ZN # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 -3 ? ? ? A . n A 1 2 SER 2 -2 ? ? ? A . n A 1 3 HIS 3 -1 ? ? ? A . n A 1 4 MET 4 0 ? ? ? A . n A 1 5 ASP 5 1 1 ASP ASP A . n A 1 6 VAL 6 2 2 VAL VAL A . n A 1 7 THR 7 3 3 THR THR A . n A 1 8 ARG 8 4 4 ARG ARG A . n A 1 9 CYS 9 5 5 CYS CYS A . n A 1 10 ILE 10 6 6 ILE ILE A . n A 1 11 CYS 11 7 7 CYS CYS A . n A 1 12 GLY 12 8 8 GLY GLY A . n A 1 13 PHE 13 9 9 PHE PHE A . n A 1 14 THR 14 10 10 THR THR A . n A 1 15 HIS 15 11 11 HIS HIS A . n A 1 16 ASP 16 12 12 ASP ASP A . n A 1 17 ASP 17 13 13 ASP ASP A . n A 1 18 GLY 18 14 14 GLY GLY A . n A 1 19 TYR 19 15 15 TYR TYR A . n A 1 20 MET 20 16 16 MET MET A . n A 1 21 ILE 21 17 17 ILE ILE A . n A 1 22 CYS 22 18 18 CYS CYS A . n A 1 23 CYS 23 19 19 CYS CYS A . n A 1 24 ASP 24 20 20 ASP ASP A . n A 1 25 LYS 25 21 21 LYS LYS A . n A 1 26 CYS 26 22 22 CYS CYS A . n A 1 27 SER 27 23 23 SER SER A . n A 1 28 VAL 28 24 24 VAL VAL A . n A 1 29 TRP 29 25 25 TRP TRP A . n A 1 30 GLN 30 26 26 GLN GLN A . n A 1 31 HIS 31 27 27 HIS HIS A . n A 1 32 ILE 32 28 28 ILE ILE A . n A 1 33 ASP 33 29 29 ASP ASP A . n A 1 34 CYS 34 30 30 CYS CYS A . n A 1 35 MET 35 31 31 MET MET A . n A 1 36 GLY 36 32 32 GLY GLY A . n A 1 37 ILE 37 33 33 ILE ILE A . n A 1 38 ASP 38 34 34 ASP ASP A . n A 1 39 ARG 39 35 35 ARG ARG A . n A 1 40 GLN 40 36 36 GLN GLN A . n A 1 41 HIS 41 37 37 HIS HIS A . n A 1 42 ILE 42 38 38 ILE ILE A . n A 1 43 PRO 43 39 39 PRO PRO A . n A 1 44 ASP 44 40 40 ASP ASP A . n A 1 45 THR 45 41 41 THR THR A . n A 1 46 TYR 46 42 42 TYR TYR A . n A 1 47 LEU 47 43 43 LEU LEU A . n A 1 48 CYS 48 44 44 CYS CYS A . n A 1 49 GLU 49 45 45 GLU GLU A . n A 1 50 ARG 50 46 46 ARG ARG A . n A 1 51 CYS 51 47 47 CYS CYS A . n A 1 52 GLN 52 48 48 GLN GLN A . n A 1 53 PRO 53 49 49 PRO PRO A . n A 1 54 ARG 54 50 50 ARG ARG A . n A 1 55 ASN 55 51 51 ASN ASN A . n A 1 56 LEU 56 52 52 LEU LEU A . n A 1 57 ASP 57 53 53 ASP ASP A . n A 1 58 LYS 58 54 54 LYS LYS A . n A 1 59 GLU 59 55 55 GLU GLU A . n A 1 60 ARG 60 56 56 ARG ARG A . n A 1 61 ALA 61 57 57 ALA ALA A . n A 1 62 VAL 62 58 58 VAL VAL A . n A 1 63 LEU 63 59 59 LEU LEU A . n A 1 64 LEU 64 60 60 LEU LEU A . n A 1 65 GLN 65 61 61 GLN GLN A . n A 1 66 ARG 66 62 62 ARG ARG A . n A 1 67 ARG 67 63 63 ARG ARG A . n A 1 68 LYS 68 64 64 LYS LYS A . n A 1 69 ARG 69 65 65 ARG ARG A . n B 2 1 ALA 1 1 1 ALA ALA B . n B 2 2 ARG 2 2 2 ARG ARG B . n B 2 3 THR 3 3 3 THR THR B . n B 2 4 M3L 4 4 4 M3L M3L B . n B 2 5 GLN 5 5 5 GLN GLN B . n B 2 6 THR 6 6 6 THR THR B . n B 2 7 ALA 7 7 7 ALA ALA B . n B 2 8 ARG 8 8 ? ? ? B . n B 2 9 LYS 9 9 ? ? ? B . n B 2 10 SER 10 10 ? ? ? B . n B 2 11 THR 11 11 ? ? ? B . n B 2 12 GLY 12 12 ? ? ? B . n # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code C 3 ZN 1 101 1 ZN ZN A . D 3 ZN 1 102 2 ZN ZN A . E 4 HOH 1 201 1 HOH HOH A . E 4 HOH 2 202 2 HOH HOH A . E 4 HOH 3 203 3 HOH HOH A . E 4 HOH 4 204 4 HOH HOH A . E 4 HOH 5 205 6 HOH HOH A . E 4 HOH 6 206 7 HOH HOH A . E 4 HOH 7 207 8 HOH HOH A . E 4 HOH 8 208 9 HOH HOH A . E 4 HOH 9 209 10 HOH HOH A . E 4 HOH 10 210 11 HOH HOH A . E 4 HOH 11 211 12 HOH HOH A . E 4 HOH 12 212 13 HOH HOH A . E 4 HOH 13 213 14 HOH HOH A . E 4 HOH 14 214 15 HOH HOH A . E 4 HOH 15 215 16 HOH HOH A . E 4 HOH 16 216 17 HOH HOH A . E 4 HOH 17 217 18 HOH HOH A . E 4 HOH 18 218 19 HOH HOH A . E 4 HOH 19 219 20 HOH HOH A . E 4 HOH 20 220 21 HOH HOH A . E 4 HOH 21 221 22 HOH HOH A . E 4 HOH 22 222 23 HOH HOH A . E 4 HOH 23 223 24 HOH HOH A . E 4 HOH 24 224 25 HOH HOH A . E 4 HOH 25 225 26 HOH HOH A . E 4 HOH 26 226 27 HOH HOH A . E 4 HOH 27 227 28 HOH HOH A . E 4 HOH 28 228 29 HOH HOH A . E 4 HOH 29 229 30 HOH HOH A . E 4 HOH 30 230 31 HOH HOH A . E 4 HOH 31 231 33 HOH HOH A . E 4 HOH 32 232 34 HOH HOH A . E 4 HOH 33 233 35 HOH HOH A . E 4 HOH 34 234 36 HOH HOH A . E 4 HOH 35 235 37 HOH HOH A . E 4 HOH 36 236 38 HOH HOH A . E 4 HOH 37 237 39 HOH HOH A . E 4 HOH 38 238 40 HOH HOH A . E 4 HOH 39 239 41 HOH HOH A . E 4 HOH 40 240 42 HOH HOH A . E 4 HOH 41 241 43 HOH HOH A . E 4 HOH 42 242 44 HOH HOH A . E 4 HOH 43 243 45 HOH HOH A . E 4 HOH 44 244 46 HOH HOH A . E 4 HOH 45 245 47 HOH HOH A . E 4 HOH 46 246 48 HOH HOH A . E 4 HOH 47 247 49 HOH HOH A . E 4 HOH 48 248 50 HOH HOH A . E 4 HOH 49 249 51 HOH HOH A . E 4 HOH 50 250 52 HOH HOH A . E 4 HOH 51 251 53 HOH HOH A . E 4 HOH 52 252 55 HOH HOH A . E 4 HOH 53 253 56 HOH HOH A . E 4 HOH 54 254 57 HOH HOH A . E 4 HOH 55 255 60 HOH HOH A . E 4 HOH 56 256 61 HOH HOH A . E 4 HOH 57 257 62 HOH HOH A . E 4 HOH 58 258 63 HOH HOH A . E 4 HOH 59 259 65 HOH HOH A . E 4 HOH 60 260 66 HOH HOH A . E 4 HOH 61 261 67 HOH HOH A . E 4 HOH 62 262 68 HOH HOH A . E 4 HOH 63 263 69 HOH HOH A . E 4 HOH 64 264 70 HOH HOH A . E 4 HOH 65 265 72 HOH HOH A . E 4 HOH 66 266 73 HOH HOH A . E 4 HOH 67 267 74 HOH HOH A . E 4 HOH 68 268 75 HOH HOH A . E 4 HOH 69 269 76 HOH HOH A . E 4 HOH 70 270 77 HOH HOH A . E 4 HOH 71 271 78 HOH HOH A . E 4 HOH 72 272 79 HOH HOH A . E 4 HOH 73 273 80 HOH HOH A . E 4 HOH 74 274 81 HOH HOH A . E 4 HOH 75 275 82 HOH HOH A . E 4 HOH 76 276 83 HOH HOH A . E 4 HOH 77 277 84 HOH HOH A . E 4 HOH 78 278 85 HOH HOH A . E 4 HOH 79 279 86 HOH HOH A . E 4 HOH 80 280 87 HOH HOH A . E 4 HOH 81 281 88 HOH HOH A . E 4 HOH 82 282 89 HOH HOH A . E 4 HOH 83 283 91 HOH HOH A . E 4 HOH 84 284 92 HOH HOH A . E 4 HOH 85 285 93 HOH HOH A . E 4 HOH 86 286 94 HOH HOH A . E 4 HOH 87 287 96 HOH HOH A . E 4 HOH 88 288 97 HOH HOH A . E 4 HOH 89 289 98 HOH HOH A . E 4 HOH 90 290 100 HOH HOH A . E 4 HOH 91 291 101 HOH HOH A . E 4 HOH 92 292 102 HOH HOH A . E 4 HOH 93 293 103 HOH HOH A . E 4 HOH 94 294 104 HOH HOH A . E 4 HOH 95 295 105 HOH HOH A . E 4 HOH 96 296 106 HOH HOH A . E 4 HOH 97 297 107 HOH HOH A . E 4 HOH 98 298 110 HOH HOH A . E 4 HOH 99 299 111 HOH HOH A . E 4 HOH 100 300 112 HOH HOH A . E 4 HOH 101 301 113 HOH HOH A . E 4 HOH 102 302 114 HOH HOH A . E 4 HOH 103 303 115 HOH HOH A . E 4 HOH 104 304 116 HOH HOH A . E 4 HOH 105 305 117 HOH HOH A . E 4 HOH 106 306 118 HOH HOH A . E 4 HOH 107 307 119 HOH HOH A . E 4 HOH 108 308 120 HOH HOH A . E 4 HOH 109 309 121 HOH HOH A . E 4 HOH 110 310 122 HOH HOH A . E 4 HOH 111 311 123 HOH HOH A . E 4 HOH 112 312 124 HOH HOH A . E 4 HOH 113 313 125 HOH HOH A . F 4 HOH 1 101 5 HOH HOH B . F 4 HOH 2 102 32 HOH HOH B . F 4 HOH 3 103 54 HOH HOH B . F 4 HOH 4 104 58 HOH HOH B . F 4 HOH 5 105 59 HOH HOH B . F 4 HOH 6 106 64 HOH HOH B . F 4 HOH 7 107 71 HOH HOH B . F 4 HOH 8 108 90 HOH HOH B . F 4 HOH 9 109 95 HOH HOH B . F 4 HOH 10 110 99 HOH HOH B . F 4 HOH 11 111 108 HOH HOH B . F 4 HOH 12 112 109 HOH HOH B . # _pdbx_struct_mod_residue.id 1 _pdbx_struct_mod_residue.label_asym_id B _pdbx_struct_mod_residue.label_comp_id M3L _pdbx_struct_mod_residue.label_seq_id 4 _pdbx_struct_mod_residue.auth_asym_id B _pdbx_struct_mod_residue.auth_comp_id M3L _pdbx_struct_mod_residue.auth_seq_id 4 _pdbx_struct_mod_residue.PDB_ins_code ? _pdbx_struct_mod_residue.parent_comp_id LYS _pdbx_struct_mod_residue.details N-TRIMETHYLLYSINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details dimeric _pdbx_struct_assembly.oligomeric_count 2 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 880 ? 1 MORE -6 ? 1 'SSA (A^2)' 4780 ? # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_struct_conn_angle.id _pdbx_struct_conn_angle.ptnr1_label_atom_id _pdbx_struct_conn_angle.ptnr1_label_alt_id _pdbx_struct_conn_angle.ptnr1_label_asym_id _pdbx_struct_conn_angle.ptnr1_label_comp_id _pdbx_struct_conn_angle.ptnr1_label_seq_id _pdbx_struct_conn_angle.ptnr1_auth_atom_id _pdbx_struct_conn_angle.ptnr1_auth_asym_id _pdbx_struct_conn_angle.ptnr1_auth_comp_id _pdbx_struct_conn_angle.ptnr1_auth_seq_id _pdbx_struct_conn_angle.ptnr1_PDB_ins_code _pdbx_struct_conn_angle.ptnr1_symmetry _pdbx_struct_conn_angle.ptnr2_label_atom_id _pdbx_struct_conn_angle.ptnr2_label_alt_id _pdbx_struct_conn_angle.ptnr2_label_asym_id _pdbx_struct_conn_angle.ptnr2_label_comp_id _pdbx_struct_conn_angle.ptnr2_label_seq_id _pdbx_struct_conn_angle.ptnr2_auth_atom_id _pdbx_struct_conn_angle.ptnr2_auth_asym_id _pdbx_struct_conn_angle.ptnr2_auth_comp_id _pdbx_struct_conn_angle.ptnr2_auth_seq_id _pdbx_struct_conn_angle.ptnr2_PDB_ins_code _pdbx_struct_conn_angle.ptnr2_symmetry _pdbx_struct_conn_angle.ptnr3_label_atom_id _pdbx_struct_conn_angle.ptnr3_label_alt_id _pdbx_struct_conn_angle.ptnr3_label_asym_id _pdbx_struct_conn_angle.ptnr3_label_comp_id _pdbx_struct_conn_angle.ptnr3_label_seq_id _pdbx_struct_conn_angle.ptnr3_auth_atom_id _pdbx_struct_conn_angle.ptnr3_auth_asym_id _pdbx_struct_conn_angle.ptnr3_auth_comp_id _pdbx_struct_conn_angle.ptnr3_auth_seq_id _pdbx_struct_conn_angle.ptnr3_PDB_ins_code _pdbx_struct_conn_angle.ptnr3_symmetry _pdbx_struct_conn_angle.value _pdbx_struct_conn_angle.value_esd 1 ND1 ? A HIS 31 ? A HIS 27 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 34 ? A CYS 30 ? 1_555 114.3 ? 2 ND1 ? A HIS 31 ? A HIS 27 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 9 ? A CYS 5 ? 1_555 104.7 ? 3 SG ? A CYS 34 ? A CYS 30 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 9 ? A CYS 5 ? 1_555 110.5 ? 4 ND1 ? A HIS 31 ? A HIS 27 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 11 ? A CYS 7 ? 1_555 100.0 ? 5 SG ? A CYS 34 ? A CYS 30 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 11 ? A CYS 7 ? 1_555 113.4 ? 6 SG ? A CYS 9 ? A CYS 5 ? 1_555 ZN ? D ZN . ? A ZN 102 ? 1_555 SG ? A CYS 11 ? A CYS 7 ? 1_555 113.3 ? 7 SG ? A CYS 26 ? A CYS 22 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 51 ? A CYS 47 ? 1_555 112.0 ? 8 SG ? A CYS 26 ? A CYS 22 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 23 ? A CYS 19 ? 1_555 106.9 ? 9 SG ? A CYS 51 ? A CYS 47 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 23 ? A CYS 19 ? 1_555 106.6 ? 10 SG ? A CYS 26 ? A CYS 22 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 48 ? A CYS 44 ? 1_555 110.3 ? 11 SG ? A CYS 51 ? A CYS 47 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 48 ? A CYS 44 ? 1_555 107.2 ? 12 SG ? A CYS 23 ? A CYS 19 ? 1_555 ZN ? C ZN . ? A ZN 101 ? 1_555 SG ? A CYS 48 ? A CYS 44 ? 1_555 113.9 ? # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-06-26 2 'Structure model' 1 1 2013-07-17 3 'Structure model' 1 2 2013-07-24 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal ADSC 'data collection' Quantum ? 1 PHENIX 'model building' . ? 2 PHENIX refinement '(phenix.refine: 1.8.1_1168)' ? 3 HKL-2000 'data reduction' . ? 4 HKL-2000 'data scaling' . ? 5 PHENIX phasing . ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 NH1 A ARG 35 ? ? O A HOH 211 ? ? 2.14 2 1 O A HOH 270 ? ? O A HOH 303 ? ? 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 299 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 301 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 3_545 _pdbx_validate_symm_contact.dist 2.17 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY -3 ? A GLY 1 2 1 Y 1 A SER -2 ? A SER 2 3 1 Y 1 A HIS -1 ? A HIS 3 4 1 Y 1 A MET 0 ? A MET 4 5 1 Y 1 B ARG 8 ? B ARG 8 6 1 Y 1 B LYS 9 ? B LYS 9 7 1 Y 1 B SER 10 ? B SER 10 8 1 Y 1 B THR 11 ? B THR 11 9 1 Y 1 B GLY 12 ? B GLY 12 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 3 'ZINC ION' ZN 4 water HOH #