HEADER TRANSCRIPTION 10-JUN-13 4L59 TITLE CRYSTAL STRUCTURE OF THE 3-MBT REPEAT DOMAIN OF L3MBTL3 AND UNC2533 TITLE 2 COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: LETHAL(3)MALIGNANT BRAIN TUMOR-LIKE PROTEIN 3; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: H-L(3)MBT-LIKE PROTEIN 3, L(3)MBT-LIKE PROTEIN 3, MBT-1; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: L3MBTL3, KIAA1798, MBT1; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-V2R-PRARE2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28-MHL KEYWDS 3-MBT REPEAT DOMAIN, L3MBTL3, UNC2533, STRUCTURAL GENOMICS, KEYWDS 2 STRUCTURAL GENOMICS CONSORTIUM, SGC, TRANSCRIPTION EXPDTA X-RAY DIFFRACTION AUTHOR N.ZHONG,A.DONG,M.RAVICHANDRAN,M.A.CAMERINO,B.M.DICKSON,L.I.JAMES, AUTHOR 2 B.M.BAUGHMAN,J.L.NORRIS,D.B.KIREEV,W.P.JANZEN,S.GRASLUND,S.V.FRYE, AUTHOR 3 C.BOUNTRA,A.M.EDWARDS,C.H.ARROWSMITH,P.J.BROWN,STRUCTURAL GENOMICS AUTHOR 4 CONSORTIUM (SGC) REVDAT 5 20-SEP-23 4L59 1 REMARK REVDAT 4 16-MAY-18 4L59 1 JRNL REVDAT 3 25-DEC-13 4L59 1 AUTHOR REVDAT 2 31-JUL-13 4L59 1 AUTHOR JRNL REMARK REVDAT 1 10-JUL-13 4L59 0 JRNL AUTH M.A.CAMERINO,N.ZHONG,A.DONG,B.M.DICKSON,L.I.JAMES, JRNL AUTH 2 B.M.BAUGHMAN,J.L.NORRIS,D.B.KIREEV,W.P.JANZEN, JRNL AUTH 3 C.H.ARROWSMITH,S.V.FRYE JRNL TITL THE STRUCTURE-ACTIVITY RELATIONSHIPS OF L3MBTL3 INHIBITORS: JRNL TITL 2 FLEXIBILITY OF THE DIMER INTERFACE. JRNL REF MEDCHEMCOMM V. 4 1501 2013 JRNL REFN ISSN 2040-2503 JRNL PMID 24466405 JRNL DOI 10.1039/C3MD00197K REMARK 2 REMARK 2 RESOLUTION. 2.29 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.29 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.40 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 3 NUMBER OF REFLECTIONS : 31414 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.250 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.200 REMARK 3 FREE R VALUE TEST SET COUNT : 1000 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.29 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.35 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2062 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 90.96 REMARK 3 BIN R VALUE (WORKING SET) : 0.3080 REMARK 3 BIN FREE R VALUE SET COUNT : 70 REMARK 3 BIN FREE R VALUE : 0.3360 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2431 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 41 REMARK 3 SOLVENT ATOMS : 80 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 45.60 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 51.48 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -1.08000 REMARK 3 B22 (A**2) : -1.08000 REMARK 3 B33 (A**2) : 3.49000 REMARK 3 B12 (A**2) : -1.08000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.175 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.168 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.138 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 5.930 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.953 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2551 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2227 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3488 ; 1.390 ; 1.930 REMARK 3 BOND ANGLES OTHERS (DEGREES): 5140 ; 1.018 ; 3.008 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 304 ; 6.419 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 118 ;28.091 ;23.983 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 353 ;13.801 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 8 ;18.925 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 356 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 2880 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 613 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4L59 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080197. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97904 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 31431 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.290 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 8.600 REMARK 200 R MERGE (I) : 0.07300 REMARK 200 R SYM (I) : 0.07200 REMARK 200 FOR THE DATA SET : 33.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.30 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.34 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.7 REMARK 200 DATA REDUNDANCY IN SHELL : 8.30 REMARK 200 R MERGE FOR SHELL (I) : 0.87200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4FL6 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 74.30 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 4.79 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.5M NA CITRATE, 0.1M HEPES PH7.5, REMARK 280 TEMPERATURE 291K, VAPOR DIFFUSION, HANGING DROP REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 31 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+1/3 REMARK 290 3555 -X+Y,-X,Z+2/3 REMARK 290 4555 Y,X,-Z REMARK 290 5555 X-Y,-Y,-Z+2/3 REMARK 290 6555 -X,-X+Y,-Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 36.88133 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 73.76267 REMARK 290 SMTRY1 4 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 4 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 73.76267 REMARK 290 SMTRY1 6 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 36.88133 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2800 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 29830 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -28.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -0.500000 -0.866025 0.000000 157.19700 REMARK 350 BIOMT2 2 -0.866025 0.500000 0.000000 90.75773 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 36.88133 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 228 REMARK 465 LYS A 229 REMARK 465 LYS A 230 REMARK 465 ALA A 231 REMARK 465 ASN A 361 REMARK 465 GLN A 362 REMARK 465 ASN A 363 REMARK 465 ILE A 364 REMARK 465 THR A 365 REMARK 465 PRO A 443 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 239 CG CD OE1 OE2 REMARK 470 LYS A 242 CG CD CE NZ REMARK 470 LYS A 252 CD CE NZ REMARK 470 GLU A 253 CG CD OE1 OE2 REMARK 470 LYS A 261 CG CD CE NZ REMARK 470 LYS A 324 CE NZ REMARK 470 LYS A 328 CE NZ REMARK 470 LYS A 336 CD CE NZ REMARK 470 LYS A 347 CD CE NZ REMARK 470 LYS A 350 CE NZ REMARK 470 LYS A 356 NZ REMARK 470 ILE A 367 CG1 CG2 CD1 REMARK 470 LYS A 430 CG CD CE NZ REMARK 470 ARG A 433 CG CD NE CZ NH1 NH2 REMARK 470 ASN A 444 CG OD1 ND2 REMARK 470 VAL A 445 CG1 CG2 REMARK 470 LYS A 446 CG CD CE NZ REMARK 470 HIS A 447 CG ND1 CD2 CE1 NE2 REMARK 470 LYS A 452 CG CD CE NZ REMARK 470 GLU A 455 CD OE1 OE2 REMARK 470 ASN A 458 CG OD1 ND2 REMARK 470 ARG A 465 NH1 NH2 REMARK 470 LYS A 468 CD CE NZ REMARK 470 LYS A 478 CE NZ REMARK 470 SER A 534 OG REMARK 470 LYS A 535 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 SG CYS A 304 UNK UNX A 604 2.12 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 CYS A 304 CA - CB - SG ANGL. DEV. = 6.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 259 51.21 -111.24 REMARK 500 ASN A 260 145.13 -170.51 REMARK 500 ASP A 398 -115.49 53.38 REMARK 500 HIS A 447 65.49 -159.39 REMARK 500 PHE A 467 89.10 -69.97 REMARK 500 LYS A 478 -13.87 84.89 REMARK 500 ASN A 488 80.45 -156.90 REMARK 500 PRO A 525 1.60 -68.23 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1VZ A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 602 DBREF 4L59 A 228 544 UNP Q96JM7 LMBL3_HUMAN 228 544 SEQRES 1 A 317 GLY LYS LYS ALA TRP CYS TRP ALA SER TYR LEU GLU GLU SEQRES 2 A 317 GLU LYS ALA VAL ALA VAL PRO ALA LYS LEU PHE LYS GLU SEQRES 3 A 317 HIS GLN SER PHE PRO TYR ASN LYS ASN GLY PHE LYS VAL SEQRES 4 A 317 GLY MET LYS LEU GLU GLY VAL ASP PRO GLU HIS GLN SER SEQRES 5 A 317 VAL TYR CYS VAL LEU THR VAL ALA GLU VAL CYS GLY TYR SEQRES 6 A 317 ARG ILE LYS LEU HIS PHE ASP GLY TYR SER ASP CYS TYR SEQRES 7 A 317 ASP PHE TRP VAL ASN ALA ASP ALA LEU ASP ILE HIS PRO SEQRES 8 A 317 VAL GLY TRP CYS GLU LYS THR GLY HIS LYS LEU HIS PRO SEQRES 9 A 317 PRO LYS GLY TYR LYS GLU GLU GLU PHE ASN TRP GLN THR SEQRES 10 A 317 TYR LEU LYS THR CYS LYS ALA GLN ALA ALA PRO LYS SER SEQRES 11 A 317 LEU PHE GLU ASN GLN ASN ILE THR VAL ILE PRO SER GLY SEQRES 12 A 317 PHE ARG VAL GLY MET LYS LEU GLU ALA VAL ASP LYS LYS SEQRES 13 A 317 ASN PRO SER PHE ILE CYS VAL ALA THR VAL THR ASP MET SEQRES 14 A 317 VAL ASP ASN ARG PHE LEU VAL HIS PHE ASP ASN TRP ASP SEQRES 15 A 317 GLU SER TYR ASP TYR TRP CYS GLU ALA SER SER PRO HIS SEQRES 16 A 317 ILE HIS PRO VAL GLY TRP CYS LYS GLU HIS ARG ARG THR SEQRES 17 A 317 LEU ILE THR PRO PRO GLY TYR PRO ASN VAL LYS HIS PHE SEQRES 18 A 317 SER TRP ASP LYS TYR LEU GLU GLU THR ASN SER LEU PRO SEQRES 19 A 317 ALA PRO ALA ARG ALA PHE LYS VAL LYS PRO PRO HIS GLY SEQRES 20 A 317 PHE GLN LYS LYS MET LYS LEU GLU VAL VAL ASP LYS ARG SEQRES 21 A 317 ASN PRO MET PHE ILE ARG VAL ALA THR VAL ALA ASP THR SEQRES 22 A 317 ASP ASP HIS ARG VAL LYS VAL HIS PHE ASP GLY TRP ASN SEQRES 23 A 317 ASN CYS TYR ASP TYR TRP ILE ASP ALA ASP SER PRO ASP SEQRES 24 A 317 ILE HIS PRO VAL GLY TRP CYS SER LYS THR GLY HIS PRO SEQRES 25 A 317 LEU GLN PRO PRO LEU HET 1VZ A 601 24 HET SO4 A 602 5 HET UNX A 603 1 HET UNX A 604 1 HET UNX A 605 1 HET UNX A 606 1 HET UNX A 607 1 HET UNX A 608 1 HET UNX A 609 1 HET UNX A 610 1 HET UNX A 611 1 HET UNX A 612 1 HET UNX A 613 1 HET UNX A 614 1 HETNAM 1VZ 4-(PYRROLIDIN-1-YL)-1-{4-[2-(PYRROLIDIN-1-YL) HETNAM 2 1VZ ETHYL]PHENYL}PIPERIDINE HETNAM SO4 SULFATE ION HETNAM UNX UNKNOWN ATOM OR ION FORMUL 2 1VZ C21 H33 N3 FORMUL 3 SO4 O4 S 2- FORMUL 4 UNX 12(X) FORMUL 16 HOH *80(H2 O) HELIX 1 1 CYS A 233 GLU A 241 1 9 HELIX 2 2 PRO A 247 PHE A 251 5 5 HELIX 3 3 SER A 302 ASP A 306 5 5 HELIX 4 4 GLY A 320 GLY A 326 1 7 HELIX 5 5 LYS A 336 PHE A 340 5 5 HELIX 6 6 ASN A 341 LYS A 350 1 10 HELIX 7 7 PRO A 355 PHE A 359 5 5 HELIX 8 8 ASP A 409 ASP A 413 5 5 HELIX 9 9 GLY A 427 HIS A 432 1 6 HELIX 10 10 ASN A 444 PHE A 448 5 5 HELIX 11 11 SER A 449 THR A 457 1 9 HELIX 12 12 PRO A 463 PHE A 467 5 5 HELIX 13 13 ASN A 513 ASP A 517 5 5 HELIX 14 14 GLY A 531 GLY A 537 1 7 SHEET 1 A 5 PHE A 307 ASN A 310 0 SHEET 2 A 5 ARG A 293 PHE A 298 -1 N LEU A 296 O PHE A 307 SHEET 3 A 5 HIS A 277 CYS A 290 -1 N ALA A 287 O LYS A 295 SHEET 4 A 5 LYS A 269 ASP A 274 -1 N GLY A 272 O CYS A 282 SHEET 5 A 5 ILE A 316 HIS A 317 -1 O HIS A 317 N GLU A 271 SHEET 1 B 4 PHE A 307 ASN A 310 0 SHEET 2 B 4 ARG A 293 PHE A 298 -1 N LEU A 296 O PHE A 307 SHEET 3 B 4 HIS A 277 CYS A 290 -1 N ALA A 287 O LYS A 295 SHEET 4 B 4 LEU A 329 HIS A 330 1 O HIS A 330 N TYR A 281 SHEET 1 C 5 TYR A 414 CYS A 416 0 SHEET 2 C 5 ARG A 400 PHE A 405 -1 N VAL A 403 O TYR A 414 SHEET 3 C 5 ILE A 388 VAL A 397 -1 N VAL A 397 O ARG A 400 SHEET 4 C 5 LYS A 376 VAL A 380 -1 N ALA A 379 O CYS A 389 SHEET 5 C 5 ILE A 423 HIS A 424 -1 O HIS A 424 N GLU A 378 SHEET 1 D 4 TYR A 414 CYS A 416 0 SHEET 2 D 4 ARG A 400 PHE A 405 -1 N VAL A 403 O TYR A 414 SHEET 3 D 4 ILE A 388 VAL A 397 -1 N VAL A 397 O ARG A 400 SHEET 4 D 4 LEU A 436 ILE A 437 1 O ILE A 437 N ILE A 388 SHEET 1 E 5 TYR A 518 ASP A 521 0 SHEET 2 E 5 ARG A 504 PHE A 509 -1 N VAL A 505 O ILE A 520 SHEET 3 E 5 ILE A 492 THR A 500 -1 N ALA A 498 O LYS A 506 SHEET 4 E 5 LYS A 480 VAL A 484 -1 N VAL A 483 O ARG A 493 SHEET 5 E 5 ILE A 527 HIS A 528 -1 O HIS A 528 N GLU A 482 SITE 1 AC1 10 ASP A 274 HIS A 277 PHE A 298 TYR A 305 SITE 2 AC1 10 ASP A 381 PHE A 387 CYS A 389 PHE A 405 SITE 3 AC1 10 TRP A 408 TYR A 412 SITE 1 AC2 3 HIS A 508 ASP A 510 GLY A 511 CRYST1 104.798 104.798 110.644 90.00 90.00 120.00 P 31 2 1 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009542 0.005509 0.000000 0.00000 SCALE2 0.000000 0.011018 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009038 0.00000