HEADER DNA BINDING PROTEIN/DNA 11-JUN-13 4L5S TITLE P202 HIN1 IN COMPLEX WITH 12-MER DSDNA COMPND MOL_ID: 1; COMPND 2 MOLECULE: INTERFERON-ACTIVABLE PROTEIN 202; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: P202 HIN1, UNP RESIDUES 46-243; COMPND 5 SYNONYM: IFI-202, INTERFERON-INDUCIBLE PROTEIN P202, LUPUS COMPND 6 SUSCEPTIBILITY PROTEIN P202; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 12-MER DNA; COMPND 10 CHAIN: C, D, E, F, G, H, I; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: MUS MUSCULUS; SOURCE 3 ORGANISM_COMMON: MOUSE; SOURCE 4 ORGANISM_TAXID: 10090; SOURCE 5 STRAIN: CZECH II; SOURCE 6 GENE: IFI202, IFI202A, IFI202B; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 9 EXPRESSION_SYSTEM_STRAIN: BL21 DE3 RIPL; SOURCE 10 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 11 EXPRESSION_SYSTEM_PLASMID: PSMT3; SOURCE 12 MOL_ID: 2; SOURCE 13 SYNTHETIC: YES; SOURCE 14 OTHER_DETAILS: CHEMICALLY SYNTHESIZED 12-MER DNA KEYWDS HIN200, OB FOLD, DSDNA BINDING DOMAIN, DNA BINDING PROTEIN-DNA KEYWDS 2 COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR Q.YIN,Y.TIAN,H.WU REVDAT 2 20-SEP-23 4L5S 1 REMARK SEQADV REVDAT 1 14-AUG-13 4L5S 0 JRNL AUTH Q.YIN,D.P.SESTER,Y.TIAN,Y.S.HSIAO,A.LU,J.A.CRIDLAND, JRNL AUTH 2 V.SAGULENKO,S.J.THYGESEN,D.CHOUBEY,V.HORNUNG,T.WALZ, JRNL AUTH 3 K.J.STACEY,H.WU JRNL TITL MOLECULAR MECHANISM FOR P202-MEDIATED SPECIFIC INHIBITION OF JRNL TITL 2 AIM2 INFLAMMASOME ACTIVATION. JRNL REF CELL REP V. 4 327 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 23850291 JRNL DOI 10.1016/J.CELREP.2013.06.024 REMARK 2 REMARK 2 RESOLUTION. 2.94 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.7.1_743) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.94 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.97 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.890 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 22039 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.207 REMARK 3 R VALUE (WORKING SET) : 0.204 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1129 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.9756 - 5.8819 1.00 2739 147 0.2098 0.2175 REMARK 3 2 5.8819 - 4.6700 1.00 2654 137 0.1879 0.2375 REMARK 3 3 4.6700 - 4.0801 1.00 2624 138 0.1585 0.2225 REMARK 3 4 4.0801 - 3.7072 1.00 2594 138 0.2062 0.2646 REMARK 3 5 3.7072 - 3.4416 1.00 2610 134 0.2062 0.2797 REMARK 3 6 3.4416 - 3.2387 1.00 2597 138 0.2019 0.2859 REMARK 3 7 3.2387 - 3.0765 1.00 2569 149 0.2402 0.2983 REMARK 3 8 3.0765 - 2.9426 0.98 2523 148 0.3368 0.3934 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.33 REMARK 3 B_SOL : 51.82 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.930 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 26.630 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.60500 REMARK 3 B22 (A**2) : 4.61770 REMARK 3 B33 (A**2) : 1.98730 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 4918 REMARK 3 ANGLE : 1.491 6927 REMARK 3 CHIRALITY : 0.092 772 REMARK 3 PLANARITY : 0.007 622 REMARK 3 DIHEDRAL : 26.680 1939 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 4.7265 38.5179 -9.8763 REMARK 3 T TENSOR REMARK 3 T11: 0.0136 T22: 0.1535 REMARK 3 T33: 0.0653 T12: 0.0004 REMARK 3 T13: -0.0678 T23: 0.0479 REMARK 3 L TENSOR REMARK 3 L11: 1.2284 L22: 0.8399 REMARK 3 L33: 0.4668 L12: -0.8010 REMARK 3 L13: -0.0797 L23: 0.0834 REMARK 3 S TENSOR REMARK 3 S11: 0.0275 S12: -0.0126 S13: -0.0779 REMARK 3 S21: 0.0182 S22: 0.0389 S23: -0.0055 REMARK 3 S31: 0.0123 S32: 0.0582 S33: -0.0414 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4L5S COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 29-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080216. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 31-JUL-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.3 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 SAGITTAL FOCUSING MONOCHROMETER REMARK 200 AND VERTICAL FOCUSING MIRROR REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.943 REMARK 200 RESOLUTION RANGE LOW (A) : 46.970 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: NULL REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: PDB ENTRY 4L5Q REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.66 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.2 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 CACODYLATE PH 5.2-5.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 5.3 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 58.80700 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 58.80700 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 55.65450 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 78.05900 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 55.65450 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 78.05900 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 58.80700 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 55.65450 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 78.05900 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 58.80700 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 55.65450 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 78.05900 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, C, D, E REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.80700 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: HEXAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, F, G REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -58.80700 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: H, I REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER B 45 REMARK 465 DG C 12 REMARK 465 DG E 12 REMARK 465 DG F 1 REMARK 465 DC F 2 REMARK 465 DG F 12 REMARK 465 DC G 10 REMARK 465 DT G 11 REMARK 465 DG G 12 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 146 CG CD CE NZ REMARK 470 LYS A 191 CE NZ REMARK 470 LYS B 76 CG CD CE NZ REMARK 470 GLU B 211 CG CD OE1 OE2 REMARK 470 DT C 11 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT C 11 C7 C6 REMARK 470 DG D 1 O5' REMARK 470 DT F 11 N1 C2 O2 N3 C4 O4 C5 REMARK 470 DT F 11 C7 C6 REMARK 470 DG H 12 C5' C4' O4' C3' O3' C2' C1' REMARK 470 DG H 12 N9 C8 N7 C5 C6 O6 N1 REMARK 470 DG H 12 C2 N2 N3 C4 REMARK 470 DG I 12 OP1 C5' C4' O4' C3' O3' C2' REMARK 470 DG I 12 C1' N9 C8 N7 C5 C6 O6 REMARK 470 DG I 12 N1 C2 N2 N3 C4 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLY B 78 N GLU B 80 1.52 REMARK 500 CE1 PHE B 188 OH TYR B 210 1.73 REMARK 500 O PRO A 72 O MET A 82 1.94 REMARK 500 OE1 GLU A 77 OE1 GLU A 204 2.06 REMARK 500 OD1 ASN A 147 O HOH A 402 2.10 REMARK 500 C GLY B 78 N GLU B 80 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O3' DT C 11 O2 SO4 D 101 3554 1.37 REMARK 500 OE1 GLN B 205 CB GLU B 211 4555 2.06 REMARK 500 NZ LYS B 198 OP2 DA F 4 3554 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DT I 11 O3' DT I 11 C3' -0.037 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 GLY B 78 N - CA - C ANGL. DEV. = -15.9 DEGREES REMARK 500 DA C 4 O4' - C1' - N9 ANGL. DEV. = -5.7 DEGREES REMARK 500 DT C 7 O4' - C1' - N1 ANGL. DEV. = 2.0 DEGREES REMARK 500 DC C 8 O4' - C1' - N1 ANGL. DEV. = -9.4 DEGREES REMARK 500 DC C 10 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DG D 1 O4' - C4' - C3' ANGL. DEV. = -2.7 DEGREES REMARK 500 DC D 2 C3' - C2' - C1' ANGL. DEV. = -5.0 DEGREES REMARK 500 DA D 4 O4' - C4' - C3' ANGL. DEV. = -2.8 DEGREES REMARK 500 DA D 4 O4' - C1' - N9 ANGL. DEV. = -4.6 DEGREES REMARK 500 DT D 5 O4' - C1' - N1 ANGL. DEV. = -4.5 DEGREES REMARK 500 DT D 5 N3 - C4 - O4 ANGL. DEV. = 3.7 DEGREES REMARK 500 DA D 6 O4' - C1' - N9 ANGL. DEV. = -6.1 DEGREES REMARK 500 DC D 10 C1' - O4' - C4' ANGL. DEV. = -6.8 DEGREES REMARK 500 DC D 10 O4' - C1' - N1 ANGL. DEV. = -4.7 DEGREES REMARK 500 DT D 11 O4' - C1' - N1 ANGL. DEV. = 3.1 DEGREES REMARK 500 DG D 12 O4' - C1' - N9 ANGL. DEV. = 2.7 DEGREES REMARK 500 DG E 1 O4' - C1' - C2' ANGL. DEV. = -4.9 DEGREES REMARK 500 DC E 2 C1' - O4' - C4' ANGL. DEV. = -7.7 DEGREES REMARK 500 DC E 2 O4' - C1' - C2' ANGL. DEV. = -6.2 DEGREES REMARK 500 DC E 2 C5 - C6 - N1 ANGL. DEV. = -3.4 DEGREES REMARK 500 DG E 3 O4' - C1' - N9 ANGL. DEV. = 2.3 DEGREES REMARK 500 DT E 7 C1' - O4' - C4' ANGL. DEV. = -6.1 DEGREES REMARK 500 DG F 3 O4' - C1' - N9 ANGL. DEV. = 2.5 DEGREES REMARK 500 DT F 5 C1' - O4' - C4' ANGL. DEV. = -6.3 DEGREES REMARK 500 DG G 1 O4' - C1' - N9 ANGL. DEV. = -4.4 DEGREES REMARK 500 DG G 3 C1' - O4' - C4' ANGL. DEV. = -7.4 DEGREES REMARK 500 DG G 3 O4' - C1' - N9 ANGL. DEV. = 5.4 DEGREES REMARK 500 DC H 10 O4' - C1' - N1 ANGL. DEV. = 4.7 DEGREES REMARK 500 DA I 6 O4' - C1' - N9 ANGL. DEV. = 2.2 DEGREES REMARK 500 DG I 9 O4' - C1' - N9 ANGL. DEV. = 3.9 DEGREES REMARK 500 DC I 10 O4' - C4' - C3' ANGL. DEV. = -3.2 DEGREES REMARK 500 DC I 10 O4' - C1' - N1 ANGL. DEV. = 2.9 DEGREES REMARK 500 DT I 11 P - O5' - C5' ANGL. DEV. = -9.9 DEGREES REMARK 500 DT I 11 C3' - C2' - C1' ANGL. DEV. = -6.0 DEGREES REMARK 500 DT I 11 O4' - C1' - N1 ANGL. DEV. = 3.3 DEGREES REMARK 500 DT I 11 C4 - C5 - C7 ANGL. DEV. = 5.3 DEGREES REMARK 500 DT I 11 C6 - C5 - C7 ANGL. DEV. = -6.9 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 46 136.08 -175.06 REMARK 500 ASN A 50 -4.03 72.09 REMARK 500 PHE A 73 -161.59 43.46 REMARK 500 LYS A 76 71.08 45.94 REMARK 500 GLU A 80 75.51 56.15 REMARK 500 ASN A 110 -1.82 79.89 REMARK 500 ASN A 193 84.64 61.63 REMARK 500 GLU A 194 3.01 104.68 REMARK 500 ASP A 195 159.87 174.21 REMARK 500 ASN A 196 72.73 69.01 REMARK 500 GLU A 204 159.10 171.54 REMARK 500 HIS A 206 -56.28 -136.84 REMARK 500 ASN A 207 -172.07 -66.43 REMARK 500 TYR A 210 35.26 72.96 REMARK 500 GLU A 211 80.13 44.82 REMARK 500 LYS A 212 -57.33 -29.36 REMARK 500 LYS A 225 -81.20 -108.45 REMARK 500 ASN B 50 -6.34 75.12 REMARK 500 GLU B 59 -62.13 -90.46 REMARK 500 TYR B 75 -61.24 -128.97 REMARK 500 GLU B 77 75.12 48.19 REMARK 500 LYS B 79 -28.44 27.90 REMARK 500 GLU B 80 -98.51 45.44 REMARK 500 LYS B 146 -74.58 -45.44 REMARK 500 ASN B 147 -117.44 36.61 REMARK 500 ASN B 193 -19.96 53.83 REMARK 500 LYS B 203 -75.85 -94.21 REMARK 500 GLN B 205 -167.33 -74.99 REMARK 500 HIS B 206 82.55 65.25 REMARK 500 ASN B 207 -168.08 62.46 REMARK 500 ASN B 209 -165.23 103.50 REMARK 500 LYS B 212 -143.56 129.81 REMARK 500 LYS B 225 -75.48 -121.93 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LYS A 76 GLU A 77 -131.87 REMARK 500 ASN A 193 GLU A 194 -141.82 REMARK 500 GLU A 194 ASP A 195 140.40 REMARK 500 ASN A 196 ILE A 197 145.34 REMARK 500 ILE A 208 ASN A 209 147.40 REMARK 500 ASN A 209 TYR A 210 36.74 REMARK 500 TYR A 210 GLU A 211 132.61 REMARK 500 GLU A 211 LYS A 212 -140.86 REMARK 500 GLU B 77 GLY B 78 -140.44 REMARK 500 LYS B 79 GLU B 80 149.96 REMARK 500 LYS B 146 ASN B 147 138.14 REMARK 500 LYS B 191 ASP B 192 141.99 REMARK 500 ASP B 192 ASN B 193 133.72 REMARK 500 HIS B 206 ASN B 207 147.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 101 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 101 DBREF 4L5S A 46 243 UNP Q9R002 IFI2_MOUSE 46 243 DBREF 4L5S B 46 243 UNP Q9R002 IFI2_MOUSE 46 243 DBREF 4L5S C 1 12 PDB 4L5S 4L5S 1 12 DBREF 4L5S D 1 12 PDB 4L5S 4L5S 1 12 DBREF 4L5S E 1 12 PDB 4L5S 4L5S 1 12 DBREF 4L5S F 1 12 PDB 4L5S 4L5S 1 12 DBREF 4L5S G 1 12 PDB 4L5S 4L5S 1 12 DBREF 4L5S H 1 12 PDB 4L5S 4L5S 1 12 DBREF 4L5S I 1 12 PDB 4L5S 4L5S 1 12 SEQADV 4L5S SER A 45 UNP Q9R002 EXPRESSION TAG SEQADV 4L5S LYS A 92 UNP Q9R002 GLN 92 VARIANT SEQADV 4L5S GLN A 111 UNP Q9R002 LYS 111 VARIANT SEQADV 4L5S MET A 141 UNP Q9R002 ILE 141 VARIANT SEQADV 4L5S PHE A 142 UNP Q9R002 ILE 142 VARIANT SEQADV 4L5S GLU A 204 UNP Q9R002 LYS 204 VARIANT SEQADV 4L5S SER B 45 UNP Q9R002 EXPRESSION TAG SEQADV 4L5S LYS B 92 UNP Q9R002 GLN 92 VARIANT SEQADV 4L5S GLN B 111 UNP Q9R002 LYS 111 VARIANT SEQADV 4L5S MET B 141 UNP Q9R002 ILE 141 VARIANT SEQADV 4L5S PHE B 142 UNP Q9R002 ILE 142 VARIANT SEQADV 4L5S GLU B 204 UNP Q9R002 LYS 204 VARIANT SEQRES 1 A 199 SER THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 A 199 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 A 199 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 A 199 HIS ALA THR VAL ALA THR GLU SER LYS TYR TYR ARG VAL SEQRES 5 A 199 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 A 199 ASN GLN PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 A 199 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 A 199 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 A 199 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 A 199 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 A 199 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 A 199 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 A 199 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 A 199 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 A 199 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 A 199 ILE LYS GLY GLU SEQRES 1 B 199 SER THR PRO LYS LYS ASN ILE SER LYS GLY ALA VAL LEU SEQRES 2 B 199 HIS GLU LYS PRO MET THR VAL MET VAL LEU THR ALA THR SEQRES 3 B 199 GLU PRO PHE ASN TYR LYS GLU GLY LYS GLU ASN MET PHE SEQRES 4 B 199 HIS ALA THR VAL ALA THR GLU SER LYS TYR TYR ARG VAL SEQRES 5 B 199 LYS VAL PHE ASN MET ASP LEU LYS GLU LYS PHE THR GLU SEQRES 6 B 199 ASN GLN PHE ILE THR ILE SER LYS TYR PHE ASN SER SER SEQRES 7 B 199 GLY ILE LEU GLU ILE ASN GLU THR ALA THR VAL SER GLU SEQRES 8 B 199 ALA ALA PRO ASN GLN MET PHE GLU VAL PRO LYS ASN ILE SEQRES 9 B 199 ILE ARG SER ALA LYS GLU THR LEU LYS ILE SER LYS ILE SEQRES 10 B 199 LYS GLU LEU ASP SER GLY THR LEU ILE TYR GLY VAL PHE SEQRES 11 B 199 ALA VAL GLU LYS LYS LYS VAL ASN ASP LYS SER ILE THR SEQRES 12 B 199 PHE LYS ILE LYS ASP ASN GLU ASP ASN ILE LYS VAL VAL SEQRES 13 B 199 TRP ASP LYS GLU GLN HIS ASN ILE ASN TYR GLU LYS GLY SEQRES 14 B 199 ASP LYS LEU GLN LEU PHE SER PHE HIS LEU ARG LYS GLY SEQRES 15 B 199 ASN GLY LYS PRO ILE LEU HIS SER GLY ASN HIS SER PHE SEQRES 16 B 199 ILE LYS GLY GLU SEQRES 1 C 12 DG DC DG DA DT DA DT DC DG DC DT DG SEQRES 1 D 12 DG DC DG DA DT DA DT DC DG DC DT DG SEQRES 1 E 12 DG DC DG DA DT DA DT DC DG DC DT DG SEQRES 1 F 12 DG DC DG DA DT DA DT DC DG DC DT DG SEQRES 1 G 12 DG DC DG DA DT DA DT DC DG DC DT DG SEQRES 1 H 12 DG DC DG DA DT DA DT DC DG DC DT DG SEQRES 1 I 12 DG DC DG DA DT DA DT DC DG DC DT DG HET SO4 A 301 5 HET SO4 A 302 5 HET SO4 B 301 5 HET SO4 C 101 5 HET SO4 D 101 5 HETNAM SO4 SULFATE ION FORMUL 10 SO4 5(O4 S 2-) FORMUL 15 HOH *7(H2 O) HELIX 1 1 ASN A 100 LYS A 104 5 5 HELIX 2 2 ALA A 137 MET A 141 5 5 HELIX 3 3 PRO A 145 GLU A 154 1 10 HELIX 4 4 LYS A 157 GLU A 163 1 7 HELIX 5 5 ASN B 100 PHE B 107 5 8 HELIX 6 6 ALA B 137 MET B 141 5 5 HELIX 7 7 PRO B 145 GLU B 154 1 10 HELIX 8 8 LYS B 157 LYS B 162 1 6 SHEET 1 A 8 VAL A 56 HIS A 58 0 SHEET 2 A 8 TYR A 118 SER A 121 -1 O TYR A 118 N HIS A 58 SHEET 3 A 8 ILE A 124 ILE A 127 -1 O GLU A 126 N PHE A 119 SHEET 4 A 8 TYR A 93 VAL A 98 1 N LYS A 97 O ILE A 127 SHEET 5 A 8 PHE A 83 ALA A 88 -1 N ALA A 85 O VAL A 96 SHEET 6 A 8 MET A 62 ALA A 69 -1 N MET A 65 O ALA A 88 SHEET 7 A 8 PHE A 112 SER A 116 -1 O ILE A 115 N MET A 62 SHEET 8 A 8 THR A 132 GLU A 135 -1 O SER A 134 N THR A 114 SHEET 1 B 2 ASN A 74 TYR A 75 0 SHEET 2 B 2 LYS A 79 ASN A 81 -1 O LYS A 79 N TYR A 75 SHEET 1 C 5 VAL A 181 ASN A 182 0 SHEET 2 C 5 SER A 185 LYS A 191 -1 O SER A 185 N ASN A 182 SHEET 3 C 5 LEU A 169 VAL A 176 -1 N ALA A 175 O LYS A 191 SHEET 4 C 5 LEU A 216 ARG A 224 -1 O LEU A 216 N PHE A 174 SHEET 5 C 5 PHE A 239 GLY A 242 -1 O PHE A 239 N PHE A 219 SHEET 1 D 6 VAL A 181 ASN A 182 0 SHEET 2 D 6 SER A 185 LYS A 191 -1 O SER A 185 N ASN A 182 SHEET 3 D 6 ASN A 196 TRP A 201 -1 O TRP A 201 N ILE A 186 SHEET 4 D 6 ILE A 231 HIS A 233 1 O LEU A 232 N VAL A 200 SHEET 5 D 6 LEU A 216 ARG A 224 -1 N HIS A 222 O HIS A 233 SHEET 6 D 6 PHE A 239 GLY A 242 -1 O PHE A 239 N PHE A 219 SHEET 1 E 6 VAL B 56 HIS B 58 0 SHEET 2 E 6 TYR B 118 SER B 121 -1 O ASN B 120 N VAL B 56 SHEET 3 E 6 ILE B 124 ILE B 127 -1 O GLU B 126 N PHE B 119 SHEET 4 E 6 TYR B 93 VAL B 98 1 N LYS B 97 O ILE B 127 SHEET 5 E 6 ASN B 81 ALA B 88 -1 N ALA B 85 O VAL B 96 SHEET 6 E 6 PHE B 73 ASN B 74 -1 N PHE B 73 O MET B 82 SHEET 1 F 8 VAL B 56 HIS B 58 0 SHEET 2 F 8 TYR B 118 SER B 121 -1 O ASN B 120 N VAL B 56 SHEET 3 F 8 ILE B 124 ILE B 127 -1 O GLU B 126 N PHE B 119 SHEET 4 F 8 TYR B 93 VAL B 98 1 N LYS B 97 O ILE B 127 SHEET 5 F 8 ASN B 81 ALA B 88 -1 N ALA B 85 O VAL B 96 SHEET 6 F 8 MET B 62 ALA B 69 -1 N LEU B 67 O THR B 86 SHEET 7 F 8 GLN B 111 SER B 116 -1 O ILE B 113 N VAL B 64 SHEET 8 F 8 THR B 132 GLU B 135 -1 O SER B 134 N THR B 114 SHEET 1 G 7 PHE B 239 GLY B 242 0 SHEET 2 G 7 LEU B 216 ARG B 224 -1 N GLN B 217 O LYS B 241 SHEET 3 G 7 ILE B 231 HIS B 233 -1 O HIS B 233 N HIS B 222 SHEET 4 G 7 ASN B 196 TRP B 201 1 N VAL B 200 O LEU B 232 SHEET 5 G 7 ILE B 186 LYS B 191 -1 N ILE B 186 O TRP B 201 SHEET 6 G 7 LEU B 169 VAL B 181 -1 N GLU B 177 O LYS B 189 SHEET 7 G 7 LEU B 216 ARG B 224 -1 O LEU B 218 N GLY B 172 CISPEP 1 ASP A 195 ASN A 196 0 23.98 CISPEP 2 ASN B 207 ILE B 208 0 5.25 CISPEP 3 TYR B 210 GLU B 211 0 9.31 CISPEP 4 GLU B 211 LYS B 212 0 0.21 SITE 1 AC1 3 LYS A 106 SER A 134 GLU A 135 SITE 1 AC2 6 ALA A 69 THR A 70 GLU A 71 LYS A 104 SITE 2 AC2 6 DG H 1 DC H 2 SITE 1 AC3 3 ARG B 95 GLY B 172 LEU B 218 SITE 1 AC4 5 ASP A 202 ARG A 224 HIS A 233 DA C 6 SITE 2 AC4 5 DA E 4 SITE 1 AC5 5 LYS A 53 DT C 11 DG D 9 DC D 10 SITE 2 AC5 5 DT D 11 CRYST1 111.309 156.118 117.614 90.00 90.00 90.00 C 2 2 21 56 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008984 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006405 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008502 0.00000