HEADER TRANSFERASE 12-JUN-13 4L67 TITLE CRYSTAL STRUCTURE OF CATALYTIC DOMAIN OF PAK4 COMPND MOL_ID: 1; COMPND 2 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 4; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 300-591; COMPND 5 SYNONYM: P21-ACTIVATED KINASE 4, PAK-4; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: SERINE/THREONINE-PROTEIN KINASE PAK 4; COMPND 10 CHAIN: B; COMPND 11 FRAGMENT: UNP RESIDUES 36-60; COMPND 12 SYNONYM: P21-ACTIVATED KINASE 4, PAK-4; COMPND 13 EC: 2.7.11.1; COMPND 14 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: PAK4, KIAA1142; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CONDONPLUS RP; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PYS5M; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: PAK4, KIAA1142; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PGEX-4T-1 KEYWDS CATALYTIC DOMAIN OF PAK4, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR W.WANG,J.SONG REVDAT 3 08-NOV-23 4L67 1 LINK REVDAT 2 04-SEP-13 4L67 1 JRNL REVDAT 1 14-AUG-13 4L67 0 JRNL AUTH W.WANG,L.LIM,Y.BASKARAN,E.MANSER,J.SONG JRNL TITL NMR BINDING AND CRYSTAL STRUCTURE REVEAL THAT JRNL TITL 2 INTRINSICALLY-UNSTRUCTURED REGULATORY DOMAIN AUTO-INHIBITS JRNL TITL 3 PAK4 BY A MECHANISM DIFFERENT FOR THAT OF PAK1 JRNL REF BIOCHEM.BIOPHYS.RES.COMMUN. V. 438 169 2013 JRNL REFN ISSN 0006-291X JRNL PMID 23876315 JRNL DOI 10.1016/J.BBRC.2013.07.047 REMARK 2 REMARK 2 RESOLUTION. 2.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 61.46 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 9878 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.233 REMARK 3 R VALUE (WORKING SET) : 0.228 REMARK 3 FREE R VALUE : 0.333 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.800 REMARK 3 FREE R VALUE TEST SET COUNT : 498 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.87 REMARK 3 REFLECTION IN BIN (WORKING SET) : 589 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.04 REMARK 3 BIN R VALUE (WORKING SET) : 0.3540 REMARK 3 BIN FREE R VALUE SET COUNT : 29 REMARK 3 BIN FREE R VALUE : 0.5370 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2455 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 38 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 72.80 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.02000 REMARK 3 B22 (A**2) : 2.02000 REMARK 3 B33 (A**2) : -4.04000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): NULL REMARK 3 ESU BASED ON FREE R VALUE (A): 0.478 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.425 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 23.057 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.943 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.873 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2507 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3398 ; 1.805 ; 1.986 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 308 ; 7.443 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 108 ;36.916 ;23.333 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 450 ;20.503 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;19.748 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 383 ; 0.116 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 1869 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4L67 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 24-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080231. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 200 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-D REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : SAGITALLY FOCUSED SI(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 9878 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.800 REMARK 200 RESOLUTION RANGE LOW (A) : 61.460 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 1.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : 4.800 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.07700 REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 61.49 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 10.50 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.07700 REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: CCP4 REMARK 200 STARTING MODEL: 4FIJ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.93 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.73 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M TRIS PH 8.5, 12%(M/V) PEG8000, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 298.0K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 41 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+3/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+1/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+3/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 92.28350 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 32.58750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 32.58750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 46.14175 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 32.58750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 32.58750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 138.42525 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 32.58750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 32.58750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 46.14175 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 32.58750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 32.58750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 138.42525 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 92.28350 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 THR A 590 REMARK 465 ARG A 591 REMARK 465 PRO B 36 REMARK 465 ARG B 37 REMARK 465 GLN B 38 REMARK 465 ILE B 59 REMARK 465 THR B 60 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O GLU A 485 OG SER A 488 2.02 REMARK 500 O PRO A 484 OG SER A 488 2.03 REMARK 500 C GLU A 485 OG SER A 488 2.10 REMARK 500 OG1 THR A 404 OG SER A 443 2.16 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TRP A 392 CE2 TRP A 392 CD2 0.075 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 491 C - N - CD ANGL. DEV. = -16.8 DEGREES REMARK 500 PRO A 583 C - N - CA ANGL. DEV. = -9.2 DEGREES REMARK 500 PRO B 56 C - N - CA ANGL. DEV. = 10.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 323 61.63 61.38 REMARK 500 ILE A 327 10.50 -150.51 REMARK 500 SER A 331 -124.17 62.73 REMARK 500 GLU A 366 -77.46 -17.75 REMARK 500 ILE A 369 42.39 -79.91 REMARK 500 ASP A 389 30.93 -93.87 REMARK 500 GLN A 426 -35.47 -34.71 REMARK 500 ARG A 439 -7.13 82.90 REMARK 500 ASP A 440 58.07 -145.23 REMARK 500 LYS A 442 166.99 176.50 REMARK 500 HIS A 450 -7.98 -55.37 REMARK 500 SER A 466 -170.00 -128.21 REMARK 500 PRO A 479 -71.35 -31.92 REMARK 500 ARG A 489 104.50 62.66 REMARK 500 PRO A 532 150.76 -44.59 REMARK 500 ASN A 537 48.28 -102.95 REMARK 500 LEU A 553 46.80 -89.76 REMARK 500 HIS A 569 128.85 -32.87 REMARK 500 ALA A 575 121.56 -37.16 REMARK 500 ARG A 586 -39.01 -25.60 REMARK 500 GLN A 587 0.55 -68.13 REMARK 500 GLN B 40 70.59 -152.76 REMARK 500 SER B 41 -113.50 65.86 REMARK 500 PRO B 56 -171.96 -35.68 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 SER A 331 THR A 332 145.00 REMARK 500 REMARK 500 REMARK: NULL DBREF 4L67 A 300 591 UNP O96013 PAK4_HUMAN 300 591 DBREF 4L67 B 36 60 UNP O96013 PAK4_HUMAN 36 60 SEQRES 1 A 292 SER HIS GLU GLN PHE ARG ALA ALA LEU GLN LEU VAL VAL SEQRES 2 A 292 ASP PRO GLY ASP PRO ARG SER TYR LEU ASP ASN PHE ILE SEQRES 3 A 292 LYS ILE GLY GLU GLY SER THR GLY ILE VAL CYS ILE ALA SEQRES 4 A 292 THR VAL ARG SER SER GLY LYS LEU VAL ALA VAL LYS LYS SEQRES 5 A 292 MET ASP LEU ARG LYS GLN GLN ARG ARG GLU LEU LEU PHE SEQRES 6 A 292 ASN GLU VAL VAL ILE MET ARG ASP TYR GLN HIS GLU ASN SEQRES 7 A 292 VAL VAL GLU MET TYR ASN SER TYR LEU VAL GLY ASP GLU SEQRES 8 A 292 LEU TRP VAL VAL MET GLU PHE LEU GLU GLY GLY ALA LEU SEQRES 9 A 292 THR ASP ILE VAL THR HIS THR ARG MET ASN GLU GLU GLN SEQRES 10 A 292 ILE ALA ALA VAL CYS LEU ALA VAL LEU GLN ALA LEU SER SEQRES 11 A 292 VAL LEU HIS ALA GLN GLY VAL ILE HIS ARG ASP ILE LYS SEQRES 12 A 292 SER ASP SER ILE LEU LEU THR HIS ASP GLY ARG VAL LYS SEQRES 13 A 292 LEU SER ASP PHE GLY PHE CYS ALA GLN VAL SER LYS GLU SEQRES 14 A 292 VAL PRO ARG ARG LYS SEP LEU VAL GLY THR PRO TYR TRP SEQRES 15 A 292 MET ALA PRO GLU LEU ILE SER ARG LEU PRO TYR GLY PRO SEQRES 16 A 292 GLU VAL ASP ILE TRP SER LEU GLY ILE MET VAL ILE GLU SEQRES 17 A 292 MET VAL ASP GLY GLU PRO PRO TYR PHE ASN GLU PRO PRO SEQRES 18 A 292 LEU LYS ALA MET LYS MET ILE ARG ASP ASN LEU PRO PRO SEQRES 19 A 292 ARG LEU LYS ASN LEU HIS LYS VAL SER PRO SER LEU LYS SEQRES 20 A 292 GLY PHE LEU ASP ARG LEU LEU VAL ARG ASP PRO ALA GLN SEQRES 21 A 292 ARG ALA THR ALA ALA GLU LEU LEU LYS HIS PRO PHE LEU SEQRES 22 A 292 ALA LYS ALA GLY PRO PRO ALA SER ILE VAL PRO LEU MET SEQRES 23 A 292 ARG GLN ASN ARG THR ARG SEQRES 1 B 25 PRO ARG GLN TRP GLN SER LEU ILE GLU GLU SER ALA ARG SEQRES 2 B 25 ARG PRO LYS PRO LEU VAL ASP PRO ALA CYS ILE THR MODRES 4L67 SEP A 474 SER PHOSPHOSERINE HET SEP A 474 10 HETNAM SEP PHOSPHOSERINE HETSYN SEP PHOSPHONOSERINE FORMUL 1 SEP C3 H8 N O6 P FORMUL 3 HOH *38(H2 O) HELIX 1 1 SER A 300 LEU A 310 1 11 HELIX 2 2 ASP A 316 SER A 319 5 4 HELIX 3 3 GLU A 361 ILE A 369 1 9 HELIX 4 4 LEU A 403 THR A 408 1 6 HELIX 5 5 ASN A 413 GLN A 434 1 22 HELIX 6 6 LYS A 442 ASP A 444 5 3 HELIX 7 7 THR A 478 MET A 482 5 5 HELIX 8 8 ALA A 483 SER A 488 1 6 HELIX 9 9 GLU A 495 GLY A 511 1 17 HELIX 10 10 PRO A 519 ASN A 530 1 12 HELIX 11 11 ASN A 537 VAL A 541 5 5 HELIX 12 12 SER A 542 LEU A 553 1 12 HELIX 13 13 THR A 562 LEU A 567 1 6 HELIX 14 14 LYS A 568 ALA A 575 5 8 HELIX 15 15 PRO A 577 VAL A 582 1 6 HELIX 16 16 PRO A 583 MET A 585 5 3 HELIX 17 17 SER B 41 SER B 46 1 6 SHEET 1 A 5 LEU A 321 LYS A 326 0 SHEET 2 A 5 VAL A 335 VAL A 340 -1 O THR A 339 N ASP A 322 SHEET 3 A 5 LEU A 346 ASP A 353 -1 O VAL A 349 N CYS A 336 SHEET 4 A 5 GLU A 390 MET A 395 -1 O MET A 395 N ALA A 348 SHEET 5 A 5 MET A 381 VAL A 387 -1 N TYR A 385 O TRP A 392 SHEET 1 B 3 GLY A 401 ALA A 402 0 SHEET 2 B 3 ILE A 446 LEU A 448 -1 O LEU A 448 N GLY A 401 SHEET 3 B 3 VAL A 454 LEU A 456 -1 O LYS A 455 N LEU A 447 LINK C LYS A 473 N SEP A 474 1555 1555 1.34 LINK C SEP A 474 N LEU A 475 1555 1555 1.33 CISPEP 1 ASP A 372 TYR A 373 0 -16.22 CISPEP 2 TYR A 373 GLN A 374 0 5.84 CISPEP 3 ASN A 588 ARG A 589 0 -12.05 CISPEP 4 GLN B 40 SER B 41 0 2.56 CRYST1 65.175 65.175 184.567 90.00 90.00 90.00 P 41 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015343 0.000000 0.000000 0.00000 SCALE2 0.000000 0.015343 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005418 0.00000