HEADER HYDROLASE, SUGAR BINDING PROTEIN 13-JUN-13 4L6X TITLE CRYSTAL STRUCTURE OF A GH48 CELLOBIOHYDROLASE FROM TITLE 2 CALDICELLULOSIRUPTOR BESCII COMPND MOL_ID: 1; COMPND 2 MOLECULE: GLYCOSIDE HYDROLASE FAMILY 48; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 1122-1759; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CALDICELLULOSIRUPTOR BESCII; SOURCE 3 ORGANISM_TAXID: 521460; SOURCE 4 STRAIN: ATCC BAA-1888 / DSM 6725 / Z-1320; SOURCE 5 GENE: ATHE_1867; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21-CODONPLUS (DE3)-RIL; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET21B KEYWDS CELLOBIOHYDROLASE, PROCESSIVE, HYDROLASE, SUGAR BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.JIAO,A.BAI,F.YAN,W.GENG REVDAT 3 28-FEB-24 4L6X 1 REMARK SEQADV REVDAT 2 15-NOV-17 4L6X 1 REMARK REVDAT 1 28-MAY-14 4L6X 0 JRNL AUTH A.JIAO,A.BAI,F.YAN,W.GENG JRNL TITL CRYSTALLIZATION AND PRELIMINARY X-RAY ANALYSIS OF A JRNL TITL 2 PROCESSIVE CELLOBIOHYDROLASE CBCBH48A FROM JRNL TITL 3 CALDICELLULOSIRUPTOR BESCII JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.70 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.70 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.49 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.9 REMARK 3 NUMBER OF REFLECTIONS : 70407 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.217 REMARK 3 R VALUE (WORKING SET) : 0.216 REMARK 3 FREE R VALUE : 0.233 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3730 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.70 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.74 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4996 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 94.73 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 276 REMARK 3 BIN FREE R VALUE : 0.3030 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5070 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 8 REMARK 3 SOLVENT ATOMS : 216 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 33.66 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.70000 REMARK 3 B22 (A**2) : 1.56000 REMARK 3 B33 (A**2) : -2.00000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.29000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.111 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.095 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 6.595 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.941 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 5258 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 4640 ; 0.005 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 7151 ; 0.954 ; 1.919 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10701 ; 0.726 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 626 ; 5.757 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 258 ;34.991 ;23.953 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 791 ;16.286 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 19 ;14.459 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 684 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6044 ; 0.003 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1323 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2507 ; 0.260 ; 1.218 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2506 ; 0.260 ; 1.218 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3132 ; 0.489 ; 1.826 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2751 ; 0.140 ; 1.224 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 11 A 637 REMARK 3 ORIGIN FOR THE GROUP (A): 3.9579 0.6549 25.6586 REMARK 3 T TENSOR REMARK 3 T11: 0.1621 T22: 0.0610 REMARK 3 T33: 0.1212 T12: 0.0542 REMARK 3 T13: -0.0033 T23: -0.0091 REMARK 3 L TENSOR REMARK 3 L11: 0.3558 L22: 0.4475 REMARK 3 L33: 3.6373 L12: -0.0680 REMARK 3 L13: 0.0118 L23: 0.5164 REMARK 3 S TENSOR REMARK 3 S11: -0.0272 S12: -0.0510 S13: 0.0540 REMARK 3 S21: 0.1341 S22: 0.0439 S23: -0.0335 REMARK 3 S31: 0.6598 S32: 0.0223 S33: -0.0167 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 801 A 1016 REMARK 3 ORIGIN FOR THE GROUP (A): 2.5364 5.5442 24.4305 REMARK 3 T TENSOR REMARK 3 T11: 0.0811 T22: 0.0712 REMARK 3 T33: 0.1388 T12: 0.0394 REMARK 3 T13: 0.0030 T23: -0.0089 REMARK 3 L TENSOR REMARK 3 L11: 0.3796 L22: 0.4996 REMARK 3 L33: 3.7369 L12: 0.0375 REMARK 3 L13: 0.1913 L23: 0.4232 REMARK 3 S TENSOR REMARK 3 S11: -0.0003 S12: -0.0469 S13: 0.0485 REMARK 3 S21: 0.0807 S22: 0.0132 S23: -0.0282 REMARK 3 S31: 0.3534 S32: -0.0646 S33: -0.0129 REMARK 3 REMARK 3 TLS GROUP : 3 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 702 A 702 REMARK 3 ORIGIN FOR THE GROUP (A): -3.0952 6.4539 30.3388 REMARK 3 T TENSOR REMARK 3 T11: 0.0617 T22: 0.1229 REMARK 3 T33: 0.0366 T12: 0.0396 REMARK 3 T13: 0.0316 T23: 0.0536 REMARK 3 L TENSOR REMARK 3 L11: 39.8464 L22: 17.0235 REMARK 3 L33: 3.8606 L12: -24.4116 REMARK 3 L13: -11.1010 L23: 8.0611 REMARK 3 S TENSOR REMARK 3 S11: -0.1592 S12: 0.1030 S13: 0.0527 REMARK 3 S21: 0.1430 S22: 0.1538 S23: 0.0022 REMARK 3 S31: 0.0717 S32: 0.1016 S33: 0.0054 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4L6X COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080257. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-MAY-11 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NULL REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : NULL REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75252 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.700 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 200 DATA REDUNDANCY : 7.300 REMARK 200 R MERGE (I) : 0.06100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 17.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.70 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.76 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 7.30 REMARK 200 R MERGE FOR SHELL (I) : 0.40500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: NULL REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 47.14 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.33 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% PEG 4000,0.1 M TRIS-BIS,18% 2 REMARK 280 -PROPANOL , PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE REMARK 280 287K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 58.06150 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 28.78100 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 58.06150 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 28.78100 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 PRO A 2 REMARK 465 THR A 3 REMARK 465 PRO A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 THR A 7 REMARK 465 PRO A 8 REMARK 465 SER A 9 REMARK 465 VAL A 10 REMARK 465 ASN A 638 REMARK 465 GLN A 639 REMARK 465 SER A 640 REMARK 465 SER A 641 REMARK 465 SER A 642 REMARK 465 VAL A 643 REMARK 465 ASP A 644 REMARK 465 LYS A 645 REMARK 465 LEU A 646 REMARK 465 ALA A 647 REMARK 465 ALA A 648 REMARK 465 ALA A 649 REMARK 465 LEU A 650 REMARK 465 GLU A 651 REMARK 465 HIS A 652 REMARK 465 HIS A 653 REMARK 465 HIS A 654 REMARK 465 HIS A 655 REMARK 465 HIS A 656 REMARK 465 HIS A 657 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 805 O HOH A 953 2555 1.60 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 49 -47.97 -164.47 REMARK 500 ALA A 50 -59.52 -131.15 REMARK 500 VAL A 173 -36.66 -135.99 REMARK 500 THR A 181 -75.61 -130.47 REMARK 500 ASP A 286 114.34 -162.20 REMARK 500 ASN A 331 84.18 -152.32 REMARK 500 ASN A 385 19.26 57.46 REMARK 500 VAL A 408 -52.27 76.46 REMARK 500 ARG A 590 50.50 -140.28 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 TYR A 305 TYR A 306 148.33 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 701 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 702 DBREF 4L6X A 2 639 UNP B9MKU7 B9MKU7_CALBD 1122 1759 SEQADV 4L6X SER A 640 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X SER A 641 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X SER A 642 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X VAL A 643 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X ASP A 644 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X LYS A 645 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X LEU A 646 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X ALA A 647 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X ALA A 648 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X ALA A 649 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X LEU A 650 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X GLU A 651 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X HIS A 652 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X HIS A 653 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X HIS A 654 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X HIS A 655 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X HIS A 656 UNP B9MKU7 EXPRESSION TAG SEQADV 4L6X HIS A 657 UNP B9MKU7 EXPRESSION TAG SEQRES 1 A 656 PRO THR PRO SER SER THR PRO SER VAL LEU GLY GLU TYR SEQRES 2 A 656 GLY GLN ARG PHE MET TRP LEU TRP ASN LYS ILE HIS ASP SEQRES 3 A 656 PRO ALA ASN GLY TYR PHE ASN GLN ASP GLY ILE PRO TYR SEQRES 4 A 656 HIS SER VAL GLU THR LEU ILE CYS GLU ALA PRO ASP TYR SEQRES 5 A 656 GLY HIS LEU THR THR SER GLU ALA PHE SER TYR TYR VAL SEQRES 6 A 656 TRP LEU GLU ALA VAL TYR GLY LYS LEU THR GLY ASP TRP SEQRES 7 A 656 SER LYS PHE LYS THR ALA TRP ASP THR LEU GLU LYS TYR SEQRES 8 A 656 MET ILE PRO SER ALA GLU ASP GLN PRO MET ARG SER TYR SEQRES 9 A 656 ASP PRO ASN LYS PRO ALA THR TYR ALA GLY GLU TRP GLU SEQRES 10 A 656 THR PRO ASP LYS TYR PRO SER PRO LEU GLU PHE ASN VAL SEQRES 11 A 656 PRO VAL GLY LYS ASP PRO LEU HIS ASN GLU LEU VAL SER SEQRES 12 A 656 THR TYR GLY SER THR LEU MET TYR GLY MET HIS TRP LEU SEQRES 13 A 656 MET ASP VAL ASP ASN TRP TYR GLY TYR GLY LYS ARG GLY SEQRES 14 A 656 ASP GLY VAL SER ARG ALA SER PHE ILE ASN THR PHE GLN SEQRES 15 A 656 ARG GLY PRO GLU GLU SER VAL TRP GLU THR VAL PRO HIS SEQRES 16 A 656 PRO SER TRP GLU GLU PHE LYS TRP GLY GLY PRO ASN GLY SEQRES 17 A 656 PHE LEU ASP LEU PHE ILE LYS ASP GLN ASN TYR SER LYS SEQRES 18 A 656 GLN TRP ARG TYR THR ASP ALA PRO ASP ALA ASP ALA ARG SEQRES 19 A 656 ALA ILE GLN ALA THR TYR TRP ALA LYS VAL TRP ALA LYS SEQRES 20 A 656 GLU GLN GLY LYS PHE ASN GLU ILE SER SER TYR VAL ALA SEQRES 21 A 656 LYS ALA ALA LYS MET GLY ASP TYR LEU ARG TYR ALA MET SEQRES 22 A 656 PHE ASP LYS TYR PHE LYS PRO LEU GLY CYS GLN ASP LYS SEQRES 23 A 656 ASN ALA ALA GLY GLY THR GLY TYR ASP SER ALA HIS TYR SEQRES 24 A 656 LEU LEU SER TRP TYR TYR ALA TRP GLY GLY ALA LEU ASP SEQRES 25 A 656 GLY ALA TRP SER TRP LYS ILE GLY SER SER HIS VAL HIS SEQRES 26 A 656 PHE GLY TYR GLN ASN PRO MET ALA ALA TRP ALA LEU ALA SEQRES 27 A 656 ASN ASP SER ASP MET LYS PRO LYS SER PRO ASN GLY ALA SEQRES 28 A 656 SER ASP TRP ALA LYS SER LEU LYS ARG GLN ILE GLU PHE SEQRES 29 A 656 TYR ARG TRP LEU GLN SER ALA GLU GLY ALA ILE ALA GLY SEQRES 30 A 656 GLY ALA THR ASN SER TRP ASN GLY ARG TYR GLU LYS TYR SEQRES 31 A 656 PRO ALA GLY THR ALA THR PHE TYR GLY MET ALA TYR GLU SEQRES 32 A 656 PRO ASN PRO VAL TYR HIS ASP PRO GLY SER ASN THR TRP SEQRES 33 A 656 PHE GLY PHE GLN ALA TRP SER MET GLN ARG VAL ALA GLU SEQRES 34 A 656 TYR TYR TYR VAL THR GLY ASP LYS ASP ALA GLY ALA LEU SEQRES 35 A 656 LEU GLU LYS TRP VAL SER TRP VAL LYS SER VAL VAL LYS SEQRES 36 A 656 LEU ASN SER ASP GLY THR PHE ALA ILE PRO SER THR LEU SEQRES 37 A 656 ASP TRP SER GLY GLN PRO ASP THR TRP ASN GLY ALA TYR SEQRES 38 A 656 THR GLY ASN SER ASN LEU HIS VAL LYS VAL VAL ASP TYR SEQRES 39 A 656 GLY THR ASP LEU GLY ILE THR ALA SER LEU ALA ASN ALA SEQRES 40 A 656 LEU LEU TYR TYR SER ALA GLY THR LYS LYS TYR GLY VAL SEQRES 41 A 656 PHE ASP GLU GLY ALA LYS ASN LEU ALA LYS GLU LEU LEU SEQRES 42 A 656 ASP ARG MET TRP LYS LEU TYR ARG ASP GLU LYS GLY LEU SEQRES 43 A 656 SER ALA PRO GLU LYS ARG ALA ASP TYR LYS ARG PHE PHE SEQRES 44 A 656 GLU GLN GLU VAL TYR ILE PRO ALA GLY TRP ILE GLY LYS SEQRES 45 A 656 MET PRO ASN GLY ASP VAL ILE LYS SER GLY VAL LYS PHE SEQRES 46 A 656 ILE ASP ILE ARG SER LYS TYR LYS GLN ASP PRO ASP TRP SEQRES 47 A 656 PRO LYS LEU GLU ALA ALA TYR LYS SER GLY GLN ALA PRO SEQRES 48 A 656 GLU PHE ARG TYR HIS ARG PHE TRP ALA GLN CYS ASP ILE SEQRES 49 A 656 ALA ILE ALA ASN ALA THR TYR GLU ILE LEU PHE GLY ASN SEQRES 50 A 656 GLN SER SER SER VAL ASP LYS LEU ALA ALA ALA LEU GLU SEQRES 51 A 656 HIS HIS HIS HIS HIS HIS HET EDO A 701 4 HET EDO A 702 4 HETNAM EDO 1,2-ETHANEDIOL HETSYN EDO ETHYLENE GLYCOL FORMUL 2 EDO 2(C2 H6 O2) FORMUL 4 HOH *216(H2 O) HELIX 1 1 GLY A 12 ASP A 27 1 16 HELIX 2 2 PRO A 28 GLY A 31 5 4 HELIX 3 3 SER A 59 GLY A 77 1 19 HELIX 4 4 TRP A 79 MET A 93 1 15 HELIX 5 5 THR A 119 TYR A 123 5 5 HELIX 6 6 LEU A 138 GLY A 147 1 10 HELIX 7 7 SER A 189 THR A 193 5 5 HELIX 8 8 PHE A 210 PHE A 214 1 5 HELIX 9 9 ALA A 229 GLY A 251 1 23 HELIX 10 10 LYS A 252 LEU A 270 1 19 HELIX 11 11 ARG A 271 PHE A 275 5 5 HELIX 12 12 GLY A 294 ALA A 298 5 5 HELIX 13 13 GLY A 328 GLN A 330 5 3 HELIX 14 14 ASN A 331 ASP A 341 1 11 HELIX 15 15 ASN A 350 LEU A 369 1 20 HELIX 16 16 SER A 383 ARG A 387 5 5 HELIX 17 17 PHE A 418 GLY A 436 1 19 HELIX 18 18 ASP A 437 VAL A 455 1 19 HELIX 19 19 ASP A 498 GLY A 520 1 23 HELIX 20 20 ASP A 523 TYR A 541 1 19 HELIX 21 21 ALA A 554 TYR A 556 5 3 HELIX 22 22 LYS A 557 GLN A 562 1 6 HELIX 23 23 PHE A 586 ASP A 596 5 11 HELIX 24 24 ASP A 598 SER A 608 1 11 HELIX 25 25 ARG A 618 GLY A 637 1 20 SHEET 1 A 4 LEU A 56 THR A 58 0 SHEET 2 A 4 LEU A 157 ASP A 159 -1 O MET A 158 N THR A 57 SHEET 3 A 4 SER A 177 ASN A 180 -1 O SER A 177 N ASP A 159 SHEET 4 A 4 HIS A 196 PRO A 197 -1 O HIS A 196 N ASN A 180 SHEET 1 B 2 SER A 125 PRO A 126 0 SHEET 2 B 2 ILE A 215 LYS A 216 1 O LYS A 216 N SER A 125 SHEET 1 C 4 TRP A 199 GLU A 200 0 SHEET 2 C 4 GLN A 223 ASP A 228 -1 O GLN A 223 N GLU A 200 SHEET 3 C 4 TYR A 306 ALA A 311 -1 O TYR A 306 N ASP A 228 SHEET 4 C 4 SER A 317 ILE A 320 -1 O TRP A 318 N GLY A 309 SHEET 1 D 4 HIS A 324 HIS A 326 0 SHEET 2 D 4 GLY A 379 THR A 381 -1 O ALA A 380 N VAL A 325 SHEET 3 D 4 MET A 401 GLU A 404 -1 O ALA A 402 N THR A 381 SHEET 4 D 4 THR A 397 PHE A 398 -1 N PHE A 398 O MET A 401 SHEET 1 E 3 LYS A 456 LEU A 457 0 SHEET 2 E 3 PHE A 463 SER A 472 -1 O ALA A 464 N LYS A 456 SHEET 3 E 3 HIS A 489 GLY A 496 -1 O GLY A 496 N ILE A 465 SHEET 1 F 2 ARG A 542 ASP A 543 0 SHEET 2 F 2 GLY A 546 LEU A 547 -1 O GLY A 546 N ASP A 543 SHEET 1 G 2 GLU A 551 LYS A 552 0 SHEET 2 G 2 GLU A 613 PHE A 614 -1 O PHE A 614 N GLU A 551 SHEET 1 H 2 GLY A 572 LYS A 573 0 SHEET 2 H 2 VAL A 579 ILE A 580 -1 O ILE A 580 N GLY A 572 CISPEP 1 TYR A 123 PRO A 124 0 8.05 CISPEP 2 ASP A 411 PRO A 412 0 -3.24 SITE 1 AC1 4 GLU A 60 ALA A 229 ASP A 231 HOH A 858 SITE 1 AC2 1 ARG A 225 CRYST1 116.123 57.562 106.469 90.00 102.57 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.008612 0.000000 0.001920 0.00000 SCALE2 0.000000 0.017373 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009623 0.00000