HEADER STRUCTURAL GENOMICS, UNKNOWN FUNCTION 13-JUN-13 4L7A TITLE CRYSTAL STRUCTURE OF A PUTATIVE ZINC-BINDING METALLO-PEPTIDASE TITLE 2 (BACCAC_01431) FROM BACTEROIDES CACCAE ATCC 43185 AT 2.10 A TITLE 3 RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: UNCHARACTERIZED PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 28-297; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES CACCAE; SOURCE 3 ORGANISM_TAXID: 411901; SOURCE 4 ATCC: 43185; SOURCE 5 GENE: BACCAC_01431; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: PB1; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS PUTATIVE ZINC-BINDING METALLO-PEPTIDASE, PF15890 FAMILY PROTEIN, KEYWDS 2 STRUCTURAL GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, KEYWDS 3 PROTEIN STRUCTURE INITIATIVE, PSI-BIOLOGY, UNKNOWN FUNCTION EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 4 01-FEB-23 4L7A 1 SEQADV LINK REVDAT 3 15-NOV-17 4L7A 1 REMARK REVDAT 2 24-DEC-14 4L7A 1 TITLE REVDAT 1 03-JUL-13 4L7A 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A HYPOTHETICAL PROTEIN (BACCAC_01431) JRNL TITL 2 FROM BACTEROIDES CACCAE ATCC 43185 AT 2.10 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.09 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.09 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.59 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.0 REMARK 3 NUMBER OF REFLECTIONS : 37017 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.204 REMARK 3 R VALUE (WORKING SET) : 0.203 REMARK 3 FREE R VALUE : 0.234 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1853 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.10 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.15 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2326 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 89.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.2480 REMARK 3 BIN FREE R VALUE SET COUNT : 134 REMARK 3 BIN FREE R VALUE : 0.2890 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4244 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 332 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 28.33 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 29.19 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.08000 REMARK 3 B22 (A**2) : -1.22000 REMARK 3 B33 (A**2) : 1.30000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.229 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.182 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.129 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 9.451 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.952 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4434 ; 0.018 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): 4119 ; 0.004 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6039 ; 1.576 ; 1.944 REMARK 3 BOND ANGLES OTHERS (DEGREES): 9520 ; 0.974 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 543 ; 5.444 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 216 ;35.941 ;24.537 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 766 ;13.538 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 18 ;19.570 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 644 ; 0.096 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5009 ; 0.008 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 1017 ; 0.004 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2106 ; 1.563 ; 2.042 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2105 ; 1.563 ; 2.042 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2635 ; 2.336 ; 3.054 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 37 A 297 REMARK 3 ORIGIN FOR THE GROUP (A): 7.2087 98.1276 17.0840 REMARK 3 T TENSOR REMARK 3 T11: 0.0079 T22: 0.0416 REMARK 3 T33: 0.0468 T12: -0.0054 REMARK 3 T13: 0.0059 T23: -0.0210 REMARK 3 L TENSOR REMARK 3 L11: 0.4096 L22: 0.9897 REMARK 3 L33: 0.8794 L12: -0.2047 REMARK 3 L13: -0.1714 L23: 0.3486 REMARK 3 S TENSOR REMARK 3 S11: -0.0117 S12: 0.0728 S13: -0.0222 REMARK 3 S21: -0.0348 S22: -0.0299 S23: 0.0331 REMARK 3 S31: -0.0606 S32: -0.0025 S33: 0.0416 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 38 B 297 REMARK 3 ORIGIN FOR THE GROUP (A): 7.0442 99.6163 51.4665 REMARK 3 T TENSOR REMARK 3 T11: 0.0096 T22: 0.0427 REMARK 3 T33: 0.0357 T12: -0.0001 REMARK 3 T13: -0.0045 T23: -0.0151 REMARK 3 L TENSOR REMARK 3 L11: 0.4240 L22: 1.5135 REMARK 3 L33: 1.0481 L12: 0.2106 REMARK 3 L13: 0.1343 L23: 0.5470 REMARK 3 S TENSOR REMARK 3 S11: 0.0059 S12: -0.0959 S13: 0.0012 REMARK 3 S21: 0.1030 S22: -0.0593 S23: -0.0684 REMARK 3 S31: 0.0697 S32: 0.0100 S33: 0.0535 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. A MET-INHIBITION PROTOCOL WAS USED REMARK 3 FOR SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. REMARK 3 THE OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 2. ATOM RECORD CONTAINS SUM OF TLS AND RESIDUAL B REMARK 3 FACTORS. ANISOU RECORD CONTAINS SUM OF TLS AND RESIDUAL U REMARK 3 FACTORS. 3. THE MAD PHASES WERE USED AS RESTRAINTS DURING REMARK 3 REFINEMENT. 4. HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS. 5. WATERS WERE EXCLUDED FROM AUTOMATIC TLS ASSIGNMENT. REMARK 4 REMARK 4 4L7A COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 17-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080270. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-OCT-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 9.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ALS REMARK 200 BEAMLINE : 8.2.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979284 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : KOHZU: DOUBLE CRYSTAL SI(111) REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE MARCH 15, 2012 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 37077 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.090 REMARK 200 RESOLUTION RANGE LOW (A) : 29.590 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.3 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.18700 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 7.5700 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.09 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.16 REMARK 200 COMPLETENESS FOR SHELL (%) : 84.9 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 1.07000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.43 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 30.00% POLYETHYLENE GLYCOL 3000, 0.01M REMARK 280 EDTA SODIUM SALT, 0.1M CHES PH 9.5, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 19.54800 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 67.91150 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 58.05850 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 67.91150 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 19.54800 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 58.05850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 2150 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23360 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -8.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 0 REMARK 465 CYS A 28 REMARK 465 GLN A 29 REMARK 465 ASP A 30 REMARK 465 ASP A 31 REMARK 465 ASP A 32 REMARK 465 LEU A 33 REMARK 465 GLU A 34 REMARK 465 ASP A 35 REMARK 465 GLN A 36 REMARK 465 GLY B 0 REMARK 465 CYS B 28 REMARK 465 GLN B 29 REMARK 465 ASP B 30 REMARK 465 ASP B 31 REMARK 465 ASP B 32 REMARK 465 LEU B 33 REMARK 465 GLU B 34 REMARK 465 ASP B 35 REMARK 465 GLN B 36 REMARK 465 SER B 37 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ILE A 38 CG1 CG2 CD1 REMARK 470 PHE A 39 CG CD1 CD2 CE1 CE2 CZ REMARK 470 ILE B 38 CG1 CG2 CD1 REMARK 470 PHE B 39 CG CD1 CD2 CE1 CE2 CZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ASP A 84 CB - CG - OD1 ANGL. DEV. = 5.5 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TYR A 57 -52.66 -121.12 REMARK 500 TRP A 99 -65.80 -121.97 REMARK 500 LYS A 130 32.05 -95.60 REMARK 500 TYR A 164 -56.48 -136.78 REMARK 500 ILE A 296 -71.43 -82.50 REMARK 500 TRP B 99 -65.81 -121.31 REMARK 500 LYS B 130 32.03 -94.97 REMARK 500 TYR B 164 -55.72 -136.45 REMARK 500 ILE B 296 -73.33 -79.05 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-419032 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THE CONSTRUCT (28-297) WAS EXPRESSED WITH A PURIFICATION TAG REMARK 999 MGSDKIHHHHHHENLYFQG. THE TAG WAS REMOVED WITH TEV PROTEASE LEAVING REMARK 999 ONLY A GLYCINE (0) FOLLOWED BY THE TARGET SEQUENCE. DBREF 4L7A A 28 297 UNP A5ZEW7 A5ZEW7_9BACE 28 297 DBREF 4L7A B 28 297 UNP A5ZEW7 A5ZEW7_9BACE 28 297 SEQADV 4L7A GLY A 0 UNP A5ZEW7 EXPRESSION TAG SEQADV 4L7A GLY B 0 UNP A5ZEW7 EXPRESSION TAG SEQRES 1 A 271 GLY CYS GLN ASP ASP ASP LEU GLU ASP GLN SER ILE PHE SEQRES 2 A 271 ASP ALA SER GLU LYS GLU LYS SER GLU PHE ASP ARG TRP SEQRES 3 A 271 LEU LEU GLU ASN TYR VAL ASN PRO TYR ASN ILE ASP PHE SEQRES 4 A 271 LYS TYR ARG MSE GLU HIS ILE GLU SER ASP TYR THR HIS SEQRES 5 A 271 ASN LEU VAL PRO THR ASP PHE TRP LEU SER VAL LYS LEU SEQRES 6 A 271 ALA LYS ILE VAL LYS HIS CYS TRP LEU GLU ALA TYR ASP SEQRES 7 A 271 GLU VAL GLY GLY LEU ASP PHE THR ARG ALA CYS ALA PRO SEQRES 8 A 271 LYS VAL ILE HIS LEU ILE GLY SER ALA SER TRP ASP LYS SEQRES 9 A 271 GLY THR TYR THR LEU GLY THR ALA GLU GLY GLY LEU LYS SEQRES 10 A 271 VAL THR LEU TYR MSE GLY ASN TRP LEU ASP LEU THR ASN SEQRES 11 A 271 VAL ASP ARG MSE ASN GLU TYR TYR PHE LYS VAL MSE HIS SEQRES 12 A 271 HIS GLU PHE ALA HIS ILE LEU HIS GLN LYS LYS ASN TYR SEQRES 13 A 271 PRO VAL ASP TYR ASP LYS ILE SER ALA GLY ASN TYR THR SEQRES 14 A 271 PRO THR GLY TRP GLN ASN ARG LYS LEU ALA GLU VAL ALA SEQRES 15 A 271 PRO LEU GLY PHE VAL THR PRO TYR ALA GLY SER LYS PRO SEQRES 16 A 271 SER GLU ASP ILE ALA GLU VAL THR ALA CYS PHE LEU THR SEQRES 17 A 271 TYR PRO GLU ALA GLN TRP GLU ASN VAL MSE THR LEU ALA SEQRES 18 A 271 GLY GLU LYS GLY LYS PRO ILE ILE ASP GLN LYS LEU ALA SEQRES 19 A 271 MSE VAL LYS LYS TYR MSE LYS ASP SER TRP GLN VAL ASP SEQRES 20 A 271 LEU ASP LEU LEU ARG LYS VAL ILE ALA ARG ARG THR ASN SEQRES 21 A 271 GLU ILE SER GLU LEU ASP LEU ASP HIS ILE TYR SEQRES 1 B 271 GLY CYS GLN ASP ASP ASP LEU GLU ASP GLN SER ILE PHE SEQRES 2 B 271 ASP ALA SER GLU LYS GLU LYS SER GLU PHE ASP ARG TRP SEQRES 3 B 271 LEU LEU GLU ASN TYR VAL ASN PRO TYR ASN ILE ASP PHE SEQRES 4 B 271 LYS TYR ARG MSE GLU HIS ILE GLU SER ASP TYR THR HIS SEQRES 5 B 271 ASN LEU VAL PRO THR ASP PHE TRP LEU SER VAL LYS LEU SEQRES 6 B 271 ALA LYS ILE VAL LYS HIS CYS TRP LEU GLU ALA TYR ASP SEQRES 7 B 271 GLU VAL GLY GLY LEU ASP PHE THR ARG ALA CYS ALA PRO SEQRES 8 B 271 LYS VAL ILE HIS LEU ILE GLY SER ALA SER TRP ASP LYS SEQRES 9 B 271 GLY THR TYR THR LEU GLY THR ALA GLU GLY GLY LEU LYS SEQRES 10 B 271 VAL THR LEU TYR MSE GLY ASN TRP LEU ASP LEU THR ASN SEQRES 11 B 271 VAL ASP ARG MSE ASN GLU TYR TYR PHE LYS VAL MSE HIS SEQRES 12 B 271 HIS GLU PHE ALA HIS ILE LEU HIS GLN LYS LYS ASN TYR SEQRES 13 B 271 PRO VAL ASP TYR ASP LYS ILE SER ALA GLY ASN TYR THR SEQRES 14 B 271 PRO THR GLY TRP GLN ASN ARG LYS LEU ALA GLU VAL ALA SEQRES 15 B 271 PRO LEU GLY PHE VAL THR PRO TYR ALA GLY SER LYS PRO SEQRES 16 B 271 SER GLU ASP ILE ALA GLU VAL THR ALA CYS PHE LEU THR SEQRES 17 B 271 TYR PRO GLU ALA GLN TRP GLU ASN VAL MSE THR LEU ALA SEQRES 18 B 271 GLY GLU LYS GLY LYS PRO ILE ILE ASP GLN LYS LEU ALA SEQRES 19 B 271 MSE VAL LYS LYS TYR MSE LYS ASP SER TRP GLN VAL ASP SEQRES 20 B 271 LEU ASP LEU LEU ARG LYS VAL ILE ALA ARG ARG THR ASN SEQRES 21 B 271 GLU ILE SER GLU LEU ASP LEU ASP HIS ILE TYR MODRES 4L7A MSE A 69 MET SELENOMETHIONINE MODRES 4L7A MSE A 148 MET SELENOMETHIONINE MODRES 4L7A MSE A 160 MET SELENOMETHIONINE MODRES 4L7A MSE A 168 MET SELENOMETHIONINE MODRES 4L7A MSE A 244 MET SELENOMETHIONINE MODRES 4L7A MSE A 261 MET SELENOMETHIONINE MODRES 4L7A MSE A 266 MET SELENOMETHIONINE MODRES 4L7A MSE B 69 MET SELENOMETHIONINE MODRES 4L7A MSE B 148 MET SELENOMETHIONINE MODRES 4L7A MSE B 160 MET SELENOMETHIONINE MODRES 4L7A MSE B 168 MET SELENOMETHIONINE MODRES 4L7A MSE B 244 MET SELENOMETHIONINE MODRES 4L7A MSE B 261 MET SELENOMETHIONINE MODRES 4L7A MSE B 266 MET SELENOMETHIONINE HET MSE A 69 8 HET MSE A 148 8 HET MSE A 160 8 HET MSE A 168 8 HET MSE A 244 8 HET MSE A 261 8 HET MSE A 266 8 HET MSE B 69 8 HET MSE B 148 8 HET MSE B 160 8 HET MSE B 168 8 HET MSE B 244 8 HET MSE B 261 8 HET MSE B 266 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 14(C5 H11 N O2 SE) FORMUL 3 HOH *332(H2 O) HELIX 1 1 SER A 42 TYR A 57 1 16 HELIX 2 2 TYR A 57 ASN A 62 1 6 HELIX 3 3 ARG A 68 ILE A 72 5 5 HELIX 4 4 ASP A 84 TRP A 99 1 16 HELIX 5 5 TRP A 99 GLY A 108 1 10 HELIX 6 6 GLY A 108 CYS A 115 1 8 HELIX 7 7 ASN A 156 TYR A 164 1 9 HELIX 8 8 TYR A 164 LYS A 180 1 17 HELIX 9 9 PRO A 183 ILE A 189 5 7 HELIX 10 10 GLY A 198 ARG A 202 5 5 HELIX 11 11 LYS A 203 ALA A 208 1 6 HELIX 12 12 PRO A 209 GLY A 211 5 3 HELIX 13 13 PRO A 215 SER A 219 5 5 HELIX 14 14 LYS A 220 TYR A 235 1 16 HELIX 15 15 PRO A 236 GLN A 271 1 36 HELIX 16 16 ASP A 273 GLU A 287 1 15 HELIX 17 17 ILE A 288 LEU A 291 5 4 HELIX 18 18 SER B 42 TYR B 57 1 16 HELIX 19 19 TYR B 57 ASN B 62 1 6 HELIX 20 20 ARG B 68 ILE B 72 5 5 HELIX 21 21 ASP B 84 TRP B 99 1 16 HELIX 22 22 TRP B 99 GLY B 108 1 10 HELIX 23 23 GLY B 108 CYS B 115 1 8 HELIX 24 24 ASN B 156 TYR B 164 1 9 HELIX 25 25 TYR B 164 LYS B 180 1 17 HELIX 26 26 PRO B 183 ILE B 189 5 7 HELIX 27 27 GLY B 198 ARG B 202 5 5 HELIX 28 28 LYS B 203 ALA B 208 1 6 HELIX 29 29 PRO B 209 GLY B 211 5 3 HELIX 30 30 PRO B 215 SER B 219 5 5 HELIX 31 31 LYS B 220 TYR B 235 1 16 HELIX 32 32 PRO B 236 GLN B 271 1 36 HELIX 33 33 ASP B 273 ASN B 286 1 14 HELIX 34 34 GLU B 287 LEU B 291 5 5 SHEET 1 A 4 ASP A 64 LYS A 66 0 SHEET 2 A 4 VAL A 119 GLY A 124 1 O ILE A 120 N LYS A 66 SHEET 3 A 4 GLY A 141 MSE A 148 1 O LEU A 146 N HIS A 121 SHEET 4 A 4 TYR A 133 ALA A 138 -1 N THR A 134 O THR A 145 SHEET 1 B 4 ASP B 64 LYS B 66 0 SHEET 2 B 4 VAL B 119 GLY B 124 1 O ILE B 120 N LYS B 66 SHEET 3 B 4 GLY B 141 MSE B 148 1 O LEU B 146 N HIS B 121 SHEET 4 B 4 TYR B 133 ALA B 138 -1 N THR B 134 O THR B 145 LINK C ARG A 68 N MSE A 69 1555 1555 1.32 LINK C MSE A 69 N GLU A 70 1555 1555 1.32 LINK C TYR A 147 N MSE A 148 1555 1555 1.33 LINK C MSE A 148 N GLY A 149 1555 1555 1.33 LINK C ARG A 159 N MSE A 160 1555 1555 1.34 LINK C MSE A 160 N ASN A 161 1555 1555 1.30 LINK C VAL A 167 N MSE A 168 1555 1555 1.32 LINK C MSE A 168 N HIS A 169 1555 1555 1.34 LINK C VAL A 243 N MSE A 244 1555 1555 1.34 LINK C MSE A 244 N THR A 245 1555 1555 1.33 LINK C ALA A 260 N MSE A 261 1555 1555 1.32 LINK C MSE A 261 N VAL A 262 1555 1555 1.33 LINK C TYR A 265 N MSE A 266 1555 1555 1.34 LINK C MSE A 266 N LYS A 267 1555 1555 1.34 LINK C ARG B 68 N MSE B 69 1555 1555 1.32 LINK C MSE B 69 N GLU B 70 1555 1555 1.32 LINK C TYR B 147 N MSE B 148 1555 1555 1.32 LINK C MSE B 148 N GLY B 149 1555 1555 1.33 LINK C ARG B 159 N MSE B 160 1555 1555 1.35 LINK C MSE B 160 N ASN B 161 1555 1555 1.31 LINK C VAL B 167 N MSE B 168 1555 1555 1.32 LINK C MSE B 168 N HIS B 169 1555 1555 1.33 LINK C VAL B 243 N MSE B 244 1555 1555 1.33 LINK C MSE B 244 N THR B 245 1555 1555 1.33 LINK C ALA B 260 N MSE B 261 1555 1555 1.32 LINK C MSE B 261 N VAL B 262 1555 1555 1.34 LINK C TYR B 265 N MSE B 266 1555 1555 1.32 LINK C MSE B 266 N LYS B 267 1555 1555 1.34 CRYST1 39.096 116.117 135.823 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.025578 0.000000 0.000000 0.00000 SCALE2 0.000000 0.008612 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007363 0.00000