HEADER SIALIC ACID-BINDING PROTEIN 14-JUN-13 4L7T TITLE B. FRAGILIS NANU COMPND MOL_ID: 1; COMPND 2 MOLECULE: NANU SIALIC ACID BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BACTEROIDES FRAGILIS; SOURCE 3 ORGANISM_TAXID: 272559; SOURCE 4 STRAIN: NCTC 9343; SOURCE 5 GENE: BF1720, BF9343_1638; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PET 21 KEYWDS SUSD-LIKE, SIALIC ACID BINDING, NANO, OUTER MEMBRANE, SIALIC ACID- KEYWDS 2 BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR J.B.RAFFERTY,C.PHANSOPA,G.P.STAFFORD REVDAT 3 28-FEB-24 4L7T 1 REMARK SEQADV LINK REVDAT 2 12-MAR-14 4L7T 1 JRNL REVDAT 1 01-JAN-14 4L7T 0 JRNL AUTH C.PHANSOPA,S.ROY,J.B.RAFFERTY,C.W.DOUGLAS,J.PANDHAL, JRNL AUTH 2 P.C.WRIGHT,D.J.KELLY,G.P.STAFFORD JRNL TITL STRUCTURAL AND FUNCTIONAL CHARACTERIZATION OF NANU, A NOVEL JRNL TITL 2 HIGH-AFFINITY SIALIC ACID-INDUCIBLE BINDING PROTEIN OF ORAL JRNL TITL 3 AND GUT-DWELLING BACTEROIDETES SPECIES. JRNL REF BIOCHEM.J. V. 458 499 2014 JRNL REFN ISSN 0264-6021 JRNL PMID 24351045 JRNL DOI 10.1042/BJ20131415 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.5.0110 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 29.52 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 71425 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.193 REMARK 3 R VALUE (WORKING SET) : 0.191 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3789 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.61 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.65 REMARK 3 REFLECTION IN BIN (WORKING SET) : 5201 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 99.98 REMARK 3 BIN R VALUE (WORKING SET) : 0.2610 REMARK 3 BIN FREE R VALUE SET COUNT : 270 REMARK 3 BIN FREE R VALUE : 0.2820 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3919 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 21 REMARK 3 SOLVENT ATOMS : 458 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 21.54 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 1.59000 REMARK 3 B22 (A**2) : -1.19000 REMARK 3 B33 (A**2) : -0.40000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.089 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.094 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.068 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 1.926 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4041 ; 0.026 ; 0.022 REMARK 3 BOND LENGTHS OTHERS (A): NULL ; NULL ; NULL REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 5459 ; 2.042 ; 1.954 REMARK 3 BOND ANGLES OTHERS (DEGREES): NULL ; NULL ; NULL REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 494 ; 6.398 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 203 ;35.175 ;24.187 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 681 ;12.874 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 25 ;13.405 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 572 ; 0.146 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3127 ; 0.012 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2444 ; 1.328 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3901 ; 2.163 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1597 ; 3.297 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1555 ; 4.892 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4L7T COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080289. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUL-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : DIAMOND REMARK 200 BEAMLINE : I04-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.92 REMARK 200 MONOCHROMATOR : SINGLE BOUNCE REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 2M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 75294 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 29.520 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 6.700 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.61 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.65 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.9 REMARK 200 DATA REDUNDANCY IN SHELL : 6.70 REMARK 200 R MERGE FOR SHELL (I) : 0.82500 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.600 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 49.00 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.41 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 25MM NA PHOSPHATE PH7.4, 0.2 M REMARK 280 AMMONIUM ACETATE, 20 % W/V PEG3350 - 14 DAYS, VAPOR DIFFUSION, REMARK 280 HANGING DROP, TEMPERATURE 290K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 49.57000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 44.26500 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 49.57000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.76500 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 44.26500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 LEU A 2 REMARK 465 ALA A 3 REMARK 465 GLY A 4 REMARK 465 LEU A 5 REMARK 465 SER A 6 REMARK 465 LEU A 7 REMARK 465 LEU A 8 REMARK 465 LEU A 9 REMARK 465 PHE A 10 REMARK 465 SER A 11 REMARK 465 ARG A 12 REMARK 465 CYS A 13 REMARK 465 ASP A 14 REMARK 465 ALA A 15 REMARK 465 LEU A 16 REMARK 465 ASP A 17 REMARK 465 GLY A 158 REMARK 465 ALA A 159 REMARK 465 SER A 160 REMARK 465 LEU A 161 REMARK 465 ASP A 162 REMARK 465 LEU A 163 REMARK 465 SER A 164 REMARK 465 ASN A 165 REMARK 465 LEU A 166 REMARK 465 GLU A 517 REMARK 465 HIS A 518 REMARK 465 HIS A 519 REMARK 465 HIS A 520 REMARK 465 HIS A 521 REMARK 465 HIS A 522 REMARK 465 HIS A 523 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 89 CG CD OE1 OE2 REMARK 470 GLU A 174 CG CD OE1 OE2 REMARK 470 LYS A 350 CG CD CE NZ REMARK 470 GLN A 352 CG CD OE1 NE2 REMARK 470 GLN A 515 CG CD OE1 NE2 REMARK 470 ASN A 516 CG OD1 ND2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 TYR A 358 CE2 TYR A 358 CD2 0.108 REMARK 500 PHE A 379 CE1 PHE A 379 CZ 0.123 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 61 NE - CZ - NH2 ANGL. DEV. = -4.8 DEGREES REMARK 500 LEU A 81 CB - CG - CD1 ANGL. DEV. = 12.8 DEGREES REMARK 500 ARG A 377 CG - CD - NE ANGL. DEV. = -16.6 DEGREES REMARK 500 TYR A 383 CB - CG - CD1 ANGL. DEV. = -3.7 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 21 53.84 -142.23 REMARK 500 GLU A 59 -57.04 -129.55 REMARK 500 ALA A 62 -145.40 -95.08 REMARK 500 LYS A 275 127.56 -31.94 REMARK 500 ILE A 359 -61.92 -104.01 REMARK 500 ASP A 442 50.98 -117.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 605 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 483 O REMARK 620 2 THR A 486 O 89.1 REMARK 620 3 HOH A 771 O 106.4 89.5 REMARK 620 4 HOH A1021 O 86.3 82.2 164.7 REMARK 620 5 HOH A1120 O 166.4 95.4 86.6 81.5 REMARK 620 N 1 2 3 4 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 602 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 603 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 604 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 605 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 606 DBREF 4L7T A 1 516 UNP Q5LEN2 Q5LEN2_BACFN 1 516 SEQADV 4L7T GLU A 517 UNP Q5LEN2 EXPRESSION TAG SEQADV 4L7T HIS A 518 UNP Q5LEN2 EXPRESSION TAG SEQADV 4L7T HIS A 519 UNP Q5LEN2 EXPRESSION TAG SEQADV 4L7T HIS A 520 UNP Q5LEN2 EXPRESSION TAG SEQADV 4L7T HIS A 521 UNP Q5LEN2 EXPRESSION TAG SEQADV 4L7T HIS A 522 UNP Q5LEN2 EXPRESSION TAG SEQADV 4L7T HIS A 523 UNP Q5LEN2 EXPRESSION TAG SEQRES 1 A 523 MET LEU ALA GLY LEU SER LEU LEU LEU PHE SER ARG CYS SEQRES 2 A 523 ASP ALA LEU ASP ILE ASP PRO THR SER SER ILE ALA ASP SEQRES 3 A 523 SER ASN TYR TRP LYS THR GLU ALA GLN PHE SER THR PHE SEQRES 4 A 523 ASN VAL GLY LEU HIS ALA LEU LEU ARG GLU CYS SER PHE SEQRES 5 A 523 ASN PHE PHE LEU LEU GLY GLU PRO ARG ALA ASP ILE TYR SEQRES 6 A 523 GLY ASP VAL PRO PHE GLY GLY GLU ALA THR GLN GLY MET SEQRES 7 A 523 GLU ARG LEU PRO PHE ASN THR ILE ASN LYS GLU ASN THR SEQRES 8 A 523 GLY ILE SER ASN PHE ALA GLY MET TYR LYS VAL ILE ASN SEQRES 9 A 523 GLN ILE ASN LEU MET ILE ALA LYS THR LYS GLU THR THR SEQRES 10 A 523 VAL LEU SER GLU ALA GLY LYS ASN TYR TYR LEU GLY GLU SEQRES 11 A 523 ALA TYR GLY MET ARG ALA TYR LEU TYR PHE HIS LEU LEU SEQRES 12 A 523 ARG SER TRP GLY ASP VAL ILE LEU TYR LEU ASP TYR THR SEQRES 13 A 523 ASN GLY ALA SER LEU ASP LEU SER ASN LEU SER LYS ALA SEQRES 14 A 523 ALA SER PRO ALA GLU GLU VAL MET LYS GLN ILE LYS GLU SEQRES 15 A 523 ASP ILE THR ALA SER GLU LYS GLY PHE GLY SER ASP TYR SEQRES 16 A 523 SER PHE LYS TYR GLY ARG TYR TYR TRP SER MET ALA ALA SEQRES 17 A 523 THR GLN MET LEU LYS GLY GLU VAL TYR LEU TRP SER GLY SEQRES 18 A 523 ARG GLN MET GLY GLY GLY THR ALA ASP TYR THR THR ALA SEQRES 19 A 523 LYS THR ALA LEU GLN SER ILE VAL SER ASN ALA ASN VAL SEQRES 20 A 523 SER LEU GLN ASP ASP PHE SER LYS VAL PHE ALA TYR ASN SEQRES 21 A 523 ASN LYS ASP ASN SER GLU ILE ILE PHE SER ILE ARG ASN SEQRES 22 A 523 ALA LYS ASP GLU TYR ASN MET TRP ASP ASP ARG PHE ARG SEQRES 23 A 523 GLN ASN LEU VAL PRO GLN GLN ALA TYR MET THR SER THR SEQRES 24 A 523 TYR CYS ASN LYS GLU GLY VAL SER PHE LYS ASP LEU PRO SEQRES 25 A 523 GLU GLY GLN LEU ASN GLY LEU ILE ARG LEU GLN ILE ARG SEQRES 26 A 523 TYR ASP LEU TYR ASN LYS ALA PHE ARG ASP GLY ASP THR SEQRES 27 A 523 ARG LYS ASP ALA SER MET THR ALA VAL TYR GLN LYS GLN SEQRES 28 A 523 GLN ASP GLY THR VAL LYS TYR ILE ALA PRO PHE CYS ASN SEQRES 29 A 523 LYS TYR GLN GLY VAL LEU LEU ASP GLY ALA SER GLN ARG SEQRES 30 A 523 SER PHE LEU ASN ASP TYR PRO ILE TYR ARG TYR ALA ASP SEQRES 31 A 523 CYS LEU LEU LEU LEU ALA GLU ALA LYS ALA LEU LEU GLY SEQRES 32 A 523 GLU ASP PRO THR ALA GLU ILE ASN GLN VAL ARG GLU ARG SEQRES 33 A 523 ALA TYR GLY LYS GLU PHE PHE GLU ALA ASN LYS ALA THR SEQRES 34 A 523 LEU ALA TYR PRO ASN ASP LYS GLY ASP PHE TYR THR ASP SEQRES 35 A 523 ASN LYS TYR MET SER GLY ASP GLU ASP PRO LEU GLU ALA SEQRES 36 A 523 ILE LEU LYS GLU ARG MET ARG GLU PHE MET PHE GLU GLY SEQRES 37 A 523 LYS ARG TRP TYR ASP LEU ARG LEU LEU GLY ALA ASP TYR SEQRES 38 A 523 VAL THR LYS ARG THR SER ALA VAL ALA THR ARG LEU LEU SEQRES 39 A 523 TRP PRO ILE ASN GLU SER VAL LEU THR ASP ASN PRO ALA SEQRES 40 A 523 LEU LYS GLN THR PRO GLY TYR GLN ASN GLU HIS HIS HIS SEQRES 41 A 523 HIS HIS HIS HET ACT A 601 4 HET ACT A 602 4 HET EDO A 603 4 HET EDO A 604 4 HET NA A 605 1 HET EDO A 606 4 HETNAM ACT ACETATE ION HETNAM EDO 1,2-ETHANEDIOL HETNAM NA SODIUM ION HETSYN EDO ETHYLENE GLYCOL FORMUL 2 ACT 2(C2 H3 O2 1-) FORMUL 4 EDO 3(C2 H6 O2) FORMUL 6 NA NA 1+ FORMUL 8 HOH *458(H2 O) HELIX 1 1 ASP A 26 TRP A 30 5 5 HELIX 2 2 THR A 32 GLU A 49 1 18 HELIX 3 3 CYS A 50 GLU A 59 1 10 HELIX 4 4 GLY A 77 LEU A 81 5 5 HELIX 5 5 SER A 94 ALA A 97 5 4 HELIX 6 6 GLY A 98 THR A 116 1 19 HELIX 7 7 SER A 120 GLY A 147 1 28 HELIX 8 8 PRO A 172 GLY A 192 1 21 HELIX 9 9 SER A 205 MET A 224 1 20 HELIX 10 10 GLY A 226 ALA A 245 1 20 HELIX 11 11 ASP A 252 LYS A 262 5 11 HELIX 12 12 ASN A 279 ASP A 282 5 4 HELIX 13 13 ASP A 283 VAL A 290 1 8 HELIX 14 14 GLN A 292 TYR A 300 1 9 HELIX 15 15 SER A 307 LEU A 316 5 10 HELIX 16 16 ASP A 327 ALA A 332 1 6 HELIX 17 17 THR A 338 SER A 343 1 6 HELIX 18 18 TYR A 388 LEU A 402 1 15 HELIX 19 19 PRO A 406 GLY A 419 1 14 HELIX 20 20 GLY A 419 ASN A 426 1 8 HELIX 21 21 ASN A 426 ALA A 431 1 6 HELIX 22 22 GLY A 437 THR A 441 5 5 HELIX 23 23 ASP A 451 PHE A 464 1 14 HELIX 24 24 LYS A 469 GLY A 478 1 10 HELIX 25 25 GLY A 478 THR A 486 1 9 HELIX 26 26 VAL A 489 LEU A 493 5 5 HELIX 27 27 ASN A 498 ASN A 505 1 8 SHEET 1 A 2 TYR A 65 ASP A 67 0 SHEET 2 A 2 GLN A 323 ILE A 324 -1 O GLN A 323 N ASP A 67 SHEET 1 B 2 ILE A 267 ILE A 271 0 SHEET 2 B 2 TYR A 383 ARG A 387 -1 O TYR A 386 N ILE A 268 SHEET 1 C 2 MET A 344 LYS A 350 0 SHEET 2 C 2 VAL A 356 CYS A 363 -1 O ALA A 360 N VAL A 347 LINK O THR A 483 NA NA A 605 1555 1555 2.27 LINK O THR A 486 NA NA A 605 1555 1555 2.44 LINK NA NA A 605 O HOH A 771 1555 1555 2.11 LINK NA NA A 605 O HOH A1021 1555 1555 2.28 LINK NA NA A 605 O HOH A1120 1555 1555 2.41 CISPEP 1 TYR A 432 PRO A 433 0 8.14 SITE 1 AC1 5 GLN A 223 GLY A 478 ALA A 479 HOH A 786 SITE 2 AC1 5 HOH A 968 SITE 1 AC2 5 ILE A 18 PRO A 20 TYR A 259 ASN A 260 SITE 2 AC2 5 HOH A1065 SITE 1 AC3 8 ARG A 460 MET A 461 PHE A 464 MET A 465 SITE 2 AC3 8 ARG A 470 ASP A 473 HOH A 724 HOH A 729 SITE 1 AC4 5 LYS A 88 GLU A 499 LEU A 502 GLN A 510 SITE 2 AC4 5 HOH A 795 SITE 1 AC5 5 THR A 483 THR A 486 HOH A 771 HOH A1021 SITE 2 AC5 5 HOH A1120 SITE 1 AC6 4 SER A 196 PHE A 197 ASN A 246 HOH A 732 CRYST1 65.530 88.530 99.140 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015260 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011296 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010087 0.00000