HEADER SIGNALING PROTEIN 14-JUN-13 4L7W TITLE CRYSTAL STRUCTURE MUTANT H77A OF HUMAN HD DOMAIN-CONTAINING PROTEIN 2, TITLE 2 GENOMICS CONSORTIUM (NESG) TARGET HR6723 COMPND MOL_ID: 1; COMPND 2 MOLECULE: HD DOMAIN-CONTAINING PROTEIN 2; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: HEPATITIS C VIRUS NS5A-TRANSACTIVATED PROTEIN 2, HCV NS5A- COMPND 5 TRANSACTIVATED PROTEIN 2; COMPND 6 ENGINEERED: YES; COMPND 7 MUTATION: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: HDDC2, C6ORF74, NS5ATP2, CGI-130; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)+MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15_NESG KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM, NESG, HDCC2, SIGNALING KEYWDS 3 PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR A.KUZIN,M.SU,A.YAKUNIN,N.BELOGLAZOVA,J.SEETHARAMAN,M.MAGLAQUI,R.XIAO, AUTHOR 2 D.LEE,G.BROWN,R.FLICK,J.K.EVERETT,T.B.ACTON,G.T.MONTELIONE,J.F.HUNT, AUTHOR 3 L.TONG,NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) REVDAT 3 06-DEC-23 4L7W 1 REMARK REVDAT 2 20-SEP-23 4L7W 1 REMARK LINK REVDAT 1 03-JUL-13 4L7W 0 JRNL AUTH A.KUZIN,M.SU,A.YAKUNIN,N.BELOGLAZOVA,J.SEETHARAMAN, JRNL AUTH 2 M.MAGLAQUI,R.XIAO,D.LEE,G.BROWN,R.FLICK,J.K.EVERETT, JRNL AUTH 3 T.B.ACTON,G.T.MONTELIONE,J.F.HUNT,L.TONG, JRNL AUTH 4 NORTHEAST STRUCTURAL GENOMICS CONSORTIUM (NESG) JRNL TITL NORTHEAST STRUCTURAL GENOMICS CONSORTIUM TARGET HR6723 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.31 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1269 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.31 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 35.69 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 11843 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.176 REMARK 3 R VALUE (WORKING SET) : 0.174 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.750 REMARK 3 FREE R VALUE TEST SET COUNT : 562 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 35.6943 - 3.6572 1.00 2977 130 0.1607 0.1980 REMARK 3 2 3.6572 - 2.9032 1.00 2799 153 0.1890 0.2643 REMARK 3 3 2.9032 - 2.5364 1.00 2745 144 0.1873 0.2450 REMARK 3 4 2.5364 - 2.3045 1.00 2760 135 0.1857 0.2412 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.200 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 20.960 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.21 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 57.79 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 1544 REMARK 3 ANGLE : 1.101 2080 REMARK 3 CHIRALITY : 0.073 227 REMARK 3 PLANARITY : 0.004 275 REMARK 3 DIHEDRAL : 15.087 604 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): -37.9260 10.2734 8.7663 REMARK 3 T TENSOR REMARK 3 T11: 0.5261 T22: 0.3129 REMARK 3 T33: 0.3179 T12: 0.0441 REMARK 3 T13: 0.0175 T23: 0.0622 REMARK 3 L TENSOR REMARK 3 L11: 1.9497 L22: 3.6743 REMARK 3 L33: 2.3721 L12: -1.1030 REMARK 3 L13: -0.5679 L23: 0.3330 REMARK 3 S TENSOR REMARK 3 S11: 0.3158 S12: 0.4414 S13: 0.2334 REMARK 3 S21: -0.8404 S22: -0.2865 S23: -0.1672 REMARK 3 S31: -0.3439 S32: 0.0302 S33: -0.0059 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4L7W COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080292. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 06-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X4A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.979 REMARK 200 MONOCHROMATOR : SI 111 CHANNEL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 4 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 11866 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.300 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 8.900 REMARK 200 R MERGE (I) : 0.09600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 40.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: BALBES REMARK 200 STARTING MODEL: PDB ENTRY 4DMB REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.85 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: PROTEIN SOLUTION: 100MM NACL, 5MM DTT, REMARK 280 0.02% NAN3, 10MM TRIS-HCL (PH 7.5) . RESERVOIR SOLUTION: 0.1M REMARK 280 MG(NO3)2, 0.1M TRIS, 12% PEG 20000, MICROBATCH UNDER OIL, REMARK 280 TEMPERATURE 277K, PH 8 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 41 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 3555 -Y,X+1/2,Z+1/4 REMARK 290 4555 Y+1/2,-X,Z+3/4 REMARK 290 5555 -X+1/2,Y,-Z+3/4 REMARK 290 6555 X,-Y+1/2,-Z+1/4 REMARK 290 7555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X,-Y,Z REMARK 290 11555 -Y+1/2,X,Z+3/4 REMARK 290 12555 Y,-X+1/2,Z+1/4 REMARK 290 13555 -X,Y+1/2,-Z+1/4 REMARK 290 14555 X+1/2,-Y,-Z+3/4 REMARK 290 15555 Y,X,-Z REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.69000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 35.69000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 99.65400 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.69000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 49.82700 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.69000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 149.48100 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.69000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 149.48100 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.69000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 49.82700 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 35.69000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 35.69000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 99.65400 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 35.69000 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 35.69000 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 99.65400 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 35.69000 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 149.48100 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 35.69000 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 49.82700 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 35.69000 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 49.82700 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 35.69000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 149.48100 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 35.69000 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 35.69000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 99.65400 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: DIMER,43.66 KD,73.0%|DIMER,40.35 KD,20.3% REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5900 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -118.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -71.38000 REMARK 350 BIOMT2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 402 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A 1 REMARK 465 ALA A 2 REMARK 465 SER A 3 REMARK 465 VAL A 4 REMARK 465 SER A 5 REMARK 465 SER A 6 REMARK 465 ALA A 7 REMARK 465 THR A 8 REMARK 465 PHE A 9 REMARK 465 SEP A 10 REMARK 465 GLY A 11 REMARK 465 HIS A 12 REMARK 465 GLU A 201 REMARK 465 PRO A 202 REMARK 465 HIS A 203 REMARK 465 SER A 204 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 14 -89.17 75.24 REMARK 500 ARG A 42 63.42 38.95 REMARK 500 ASP A 63 37.74 -82.75 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD2 REMARK 620 2 GLU A 81 OE1 101.0 REMARK 620 3 GLU A 81 OE2 90.7 47.8 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD1 REMARK 620 2 GLU A 81 OE2 75.1 REMARK 620 3 HOH A 433 O 128.0 154.4 REMARK 620 N 1 2 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 301 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 81 OE2 REMARK 620 2 ASP A 86 OD1 104.4 REMARK 620 N 1 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 81 OE2 REMARK 620 2 ASP A 86 OD1 68.7 REMARK 620 3 ILE A 87 O 141.2 77.6 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4DMB RELATED DB: PDB REMARK 900 MUTANT H77A REMARK 900 RELATED ID: NESG-HR6723 RELATED DB: TARGETTRACK DBREF 4L7W A 1 204 UNP Q7Z4H3 HDDC2_HUMAN 1 204 SEQADV 4L7W ALA A 77 UNP Q7Z4H3 HIS 77 ENGINEERED MUTATION SEQRES 1 A 204 MSE ALA SER VAL SER SER ALA THR PHE SEP GLY HIS GLY SEQRES 2 A 204 ALA ARG SER LEU LEU GLN PHE LEU ARG LEU VAL GLY GLN SEQRES 3 A 204 LEU LYS ARG VAL PRO ARG THR GLY TRP VAL TYR ARG ASN SEQRES 4 A 204 VAL GLN ARG PRO GLU SER VAL SER ASP HIS MSE TYR ARG SEQRES 5 A 204 MSE ALA VAL MSE ALA MSE VAL ILE LYS ASP ASP ARG LEU SEQRES 6 A 204 ASN LYS ASP ARG CYS VAL ARG LEU ALA LEU VAL ALA ASP SEQRES 7 A 204 MSE ALA GLU CYS ILE VAL GLY ASP ILE ALA PRO ALA ASP SEQRES 8 A 204 ASN ILE PRO LYS GLU GLU LYS HIS ARG ARG GLU GLU GLU SEQRES 9 A 204 ALA MSE LYS GLN ILE THR GLN LEU LEU PRO GLU ASP LEU SEQRES 10 A 204 ARG LYS GLU LEU TYR GLU LEU TRP GLU GLU TYR GLU THR SEQRES 11 A 204 GLN SER SER ALA GLU ALA LYS PHE VAL LYS GLN LEU ASP SEQRES 12 A 204 GLN CYS GLU MSE ILE LEU GLN ALA SER GLU TYR GLU ASP SEQRES 13 A 204 LEU GLU HIS LYS PRO GLY ARG LEU GLN ASP PHE TYR ASP SEQRES 14 A 204 SER THR ALA GLY LYS PHE ASN HIS PRO GLU ILE VAL GLN SEQRES 15 A 204 LEU VAL SER GLU LEU GLU ALA GLU ARG SER THR ASN ILE SEQRES 16 A 204 ALA ALA ALA ALA SER GLU PRO HIS SER MODRES 4L7W MSE A 50 MET SELENOMETHIONINE MODRES 4L7W MSE A 53 MET SELENOMETHIONINE MODRES 4L7W MSE A 56 MET SELENOMETHIONINE MODRES 4L7W MSE A 58 MET SELENOMETHIONINE MODRES 4L7W MSE A 79 MET SELENOMETHIONINE MODRES 4L7W MSE A 106 MET SELENOMETHIONINE MODRES 4L7W MSE A 147 MET SELENOMETHIONINE HET MSE A 50 8 HET MSE A 53 8 HET MSE A 56 8 HET MSE A 58 8 HET MSE A 79 8 HET MSE A 106 8 HET MSE A 147 8 HET MG A 301 1 HET MG A 302 1 HET MG A 303 1 HET MG A 304 1 HET MG A 305 1 HETNAM MSE SELENOMETHIONINE HETNAM MG MAGNESIUM ION FORMUL 1 MSE 7(C5 H11 N O2 SE) FORMUL 2 MG 5(MG 2+) FORMUL 7 HOH *44(H2 O) HELIX 1 1 ALA A 14 GLN A 26 1 13 HELIX 2 2 LEU A 27 VAL A 30 5 4 HELIX 3 3 ARG A 32 TYR A 37 1 6 HELIX 4 4 SER A 45 ILE A 60 1 16 HELIX 5 5 ASN A 66 ALA A 77 1 12 HELIX 6 6 ALA A 80 GLY A 85 1 6 HELIX 7 7 ALA A 88 ASN A 92 5 5 HELIX 8 8 PRO A 94 GLN A 111 1 18 HELIX 9 9 PRO A 114 GLN A 131 1 18 HELIX 10 10 SER A 133 HIS A 159 1 27 HELIX 11 11 LEU A 164 THR A 171 1 8 HELIX 12 12 HIS A 177 ALA A 199 1 23 LINK C HIS A 49 N MSE A 50 1555 1555 1.33 LINK C MSE A 50 N TYR A 51 1555 1555 1.33 LINK C ARG A 52 N MSE A 53 1555 1555 1.33 LINK C MSE A 53 N ALA A 54 1555 1555 1.33 LINK C VAL A 55 N MSE A 56 1555 1555 1.33 LINK C MSE A 56 N ALA A 57 1555 1555 1.33 LINK C ALA A 57 N MSE A 58 1555 1555 1.33 LINK C MSE A 58 N VAL A 59 1555 1555 1.33 LINK C ASP A 78 N MSE A 79 1555 1555 1.33 LINK C MSE A 79 N ALA A 80 1555 1555 1.33 LINK C ALA A 105 N MSE A 106 1555 1555 1.33 LINK C MSE A 106 N LYS A 107 1555 1555 1.33 LINK C GLU A 146 N MSE A 147 1555 1555 1.33 LINK C MSE A 147 N ILE A 148 1555 1555 1.33 LINK OD2 ASP A 78 MG MG A 303 1555 1555 2.70 LINK OD1 ASP A 78 MG MG A 305 1555 1555 2.71 LINK OE2 GLU A 81 MG MG A 301 1555 1555 2.20 LINK OE1 GLU A 81 MG MG A 303 1555 1555 2.53 LINK OE2 GLU A 81 MG MG A 303 1555 1555 2.87 LINK OE2 GLU A 81 MG MG A 304 1555 1555 2.96 LINK OE2 GLU A 81 MG MG A 305 1555 1555 2.97 LINK OD1 ASP A 86 MG MG A 301 1555 1555 2.06 LINK OD1 ASP A 86 MG MG A 304 1555 1555 3.00 LINK O ILE A 87 MG MG A 304 1555 1555 2.72 LINK MG MG A 302 O HOH A 433 1555 1555 2.67 LINK MG MG A 305 O HOH A 433 1555 1555 2.98 SITE 1 AC1 6 GLU A 81 ASP A 86 MG A 302 MG A 303 SITE 2 AC1 6 MG A 304 MG A 305 SITE 1 AC2 7 ARG A 32 ASP A 86 MG A 301 MG A 303 SITE 2 AC2 7 MG A 304 MG A 305 HOH A 433 SITE 1 AC3 7 ARG A 32 ASP A 78 GLU A 81 ASP A 86 SITE 2 AC3 7 MG A 301 MG A 302 MG A 305 SITE 1 AC4 8 GLU A 81 ASP A 86 ILE A 87 LYS A 98 SITE 2 AC4 8 MG A 301 MG A 302 MG A 305 HOH A 414 SITE 1 AC5 7 ASP A 78 GLU A 81 MG A 301 MG A 302 SITE 2 AC5 7 MG A 303 MG A 304 HOH A 433 CRYST1 71.380 71.380 199.308 90.00 90.00 90.00 I 41 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014010 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014010 0.000000 0.00000 SCALE3 0.000000 0.000000 0.005017 0.00000