HEADER LYASE 19-JUN-13 4LA2 TITLE CRYSTAL STRUCTURE OF DIMETHYLSULPHONIOPROPIONATE (DMSP) LYASE DDDQ COMPND MOL_ID: 1; COMPND 2 MOLECULE: DIMETHYLSULPHONIOPROPIONATE (DMSP) LYASE DDDQ; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SILICIBACTER LACUSCAERULENSIS; SOURCE 3 ORGANISM_TAXID: 644107; SOURCE 4 STRAIN: ITI-1157; SOURCE 5 GENE: SL1157_0332; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS CUPIN MOTIF, DMSP LYASE, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR Y.ZHANG,C.LI REVDAT 3 20-MAR-24 4LA2 1 REMARK SEQADV LINK REVDAT 2 05-FEB-14 4LA2 1 JRNL REVDAT 1 15-JAN-14 4LA2 0 JRNL AUTH C.LI,T.WEI,S.ZHANG,X.CHEN,X.GAO,P.WANG,B.XIE,H.SU,Q.QIN, JRNL AUTH 2 X.ZHANG,J.YU,H.ZHANG,B.ZHOU,G.YANG,Y.ZHANG JRNL TITL MOLECULAR INSIGHT INTO BACTERIAL CLEAVAGE OF OCEANIC JRNL TITL 2 DIMETHYLSULFONIOPROPIONATE INTO DIMETHYL SULFIDE JRNL REF PROC.NATL.ACAD.SCI.USA V. 111 1026 2014 JRNL REFN ISSN 0027-8424 JRNL PMID 24395783 JRNL DOI 10.1073/PNAS.1312354111 REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.4_486) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : OVERALL REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 42.34 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 3 NUMBER OF REFLECTIONS : 48408 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.198 REMARK 3 R VALUE (WORKING SET) : 0.197 REMARK 3 FREE R VALUE : 0.216 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.070 REMARK 3 FREE R VALUE TEST SET COUNT : 2444 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 42.3511 - 4.1121 0.99 2870 164 0.1986 0.1813 REMARK 3 2 4.1121 - 3.2643 1.00 2754 159 0.1804 0.1814 REMARK 3 3 3.2643 - 2.8518 1.00 2748 131 0.2004 0.2266 REMARK 3 4 2.8518 - 2.5911 1.00 2731 137 0.2078 0.2191 REMARK 3 5 2.5911 - 2.4054 1.00 2739 141 0.1943 0.2169 REMARK 3 6 2.4054 - 2.2636 1.00 2677 155 0.1900 0.2127 REMARK 3 7 2.2636 - 2.1502 1.00 2708 138 0.1875 0.2686 REMARK 3 8 2.1502 - 2.0566 1.00 2684 155 0.1910 0.2250 REMARK 3 9 2.0566 - 1.9774 1.00 2690 134 0.1917 0.2329 REMARK 3 10 1.9774 - 1.9092 1.00 2673 143 0.1878 0.2117 REMARK 3 11 1.9092 - 1.8495 1.00 2658 132 0.1964 0.2329 REMARK 3 12 1.8495 - 1.7966 1.00 2678 146 0.1993 0.2538 REMARK 3 13 1.7966 - 1.7493 0.99 2645 149 0.2136 0.2423 REMARK 3 14 1.7493 - 1.7067 0.99 2675 136 0.2129 0.2713 REMARK 3 15 1.7067 - 1.6679 0.99 2665 123 0.2191 0.3064 REMARK 3 16 1.6679 - 1.6324 0.99 2636 153 0.2357 0.2745 REMARK 3 17 1.6324 - 1.5997 0.97 2575 148 0.2507 0.3157 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.30 REMARK 3 SHRINKAGE RADIUS : 1.06 REMARK 3 K_SOL : 0.36 REMARK 3 B_SOL : 36.51 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.180 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.38 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 22.40 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -6.96110 REMARK 3 B22 (A**2) : 7.89260 REMARK 3 B33 (A**2) : -0.93150 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 3148 REMARK 3 ANGLE : 1.095 4303 REMARK 3 CHIRALITY : 0.074 449 REMARK 3 PLANARITY : 0.006 559 REMARK 3 DIHEDRAL : 16.076 1101 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: ALL REMARK 3 ORIGIN FOR THE GROUP (A): 24.1355 -11.5787 -20.5768 REMARK 3 T TENSOR REMARK 3 T11: 0.1112 T22: 0.0928 REMARK 3 T33: 0.1131 T12: 0.0007 REMARK 3 T13: -0.0058 T23: 0.0038 REMARK 3 L TENSOR REMARK 3 L11: 0.2114 L22: 0.0151 REMARK 3 L33: 0.2811 L12: 0.0268 REMARK 3 L13: -0.0682 L23: 0.0048 REMARK 3 S TENSOR REMARK 3 S11: -0.0005 S12: 0.0145 S13: 0.0054 REMARK 3 S21: -0.0035 S22: -0.0080 S23: 0.0038 REMARK 3 S31: 0.0263 S32: -0.0165 S33: 0.0054 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LA2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 04-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080370. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 20-DEC-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9793 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48408 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 7.000 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.66 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.2 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: MLPHARE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 39.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.05 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M SODIUM CHLORIDE, 0.1M MES, 20% REMARK 280 (W/V) PEG 2000 MME , PH 6.0, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 24.19150 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 43.72850 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 42.65150 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 43.72850 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 24.19150 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 42.65150 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ALA A 191 REMARK 465 ALA A 192 REMARK 465 HIS A 193 REMARK 465 HIS A 194 REMARK 465 HIS A 195 REMARK 465 HIS A 196 REMARK 465 HIS A 197 REMARK 465 HIS A 198 REMARK 465 HIS B 193 REMARK 465 HIS B 194 REMARK 465 HIS B 195 REMARK 465 HIS B 196 REMARK 465 HIS B 197 REMARK 465 HIS B 198 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 CB HIS A 125 O HOH A 523 1.38 REMARK 500 OE1 GLU B 4 O HOH B 507 1.46 REMARK 500 O HOH B 316 O HOH B 502 1.61 REMARK 500 O HOH B 508 O HOH B 509 1.68 REMARK 500 NE ARG B 155 O HOH B 510 1.81 REMARK 500 O HOH A 524 O HOH A 525 1.83 REMARK 500 NH2 ARG B 155 O HOH B 510 1.83 REMARK 500 CG HIS A 125 O HOH A 523 1.98 REMARK 500 OH TYR A 131 O2S MES A 202 1.99 REMARK 500 CZ ARG B 155 O HOH B 510 2.00 REMARK 500 O HOH B 415 O HOH B 457 2.02 REMARK 500 OH TYR B 131 O2S MES B 202 2.04 REMARK 500 O HOH B 343 O HOH B 456 2.04 REMARK 500 O HOH B 469 O HOH B 472 2.06 REMARK 500 O HOH B 333 O HOH B 507 2.06 REMARK 500 O HOH A 358 O HOH A 488 2.07 REMARK 500 O HOH A 455 O HOH A 507 2.09 REMARK 500 OD1 ASN B 184 O HOH B 369 2.10 REMARK 500 O HOH B 381 O HOH B 455 2.11 REMARK 500 O HOH A 500 O HOH A 505 2.14 REMARK 500 O HOH A 390 O HOH A 442 2.16 REMARK 500 OE2 GLU A 79 O HOH A 495 2.17 REMARK 500 O HOH B 367 O HOH B 439 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OE1 GLU A 145 O HOH A 427 4445 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 2 -77.32 -138.06 REMARK 500 ARG A 75 -31.49 -132.81 REMARK 500 THR A 76 -59.62 66.50 REMARK 500 GLU A 152 -8.45 85.30 REMARK 500 ARG B 75 -31.99 -130.78 REMARK 500 THR B 76 -53.39 68.77 REMARK 500 GLU B 152 -8.02 82.04 REMARK 500 ALA B 191 -37.31 -33.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 125 NE2 REMARK 620 2 GLU A 129 OE1 92.2 REMARK 620 3 GLU A 129 OE2 89.9 58.0 REMARK 620 4 TYR A 131 OH 171.2 79.0 85.8 REMARK 620 5 HIS A 163 NE2 96.9 91.6 149.2 83.1 REMARK 620 6 MES A 202 O1S 82.0 152.8 95.2 106.0 115.5 REMARK 620 7 MES A 202 O2S 141.6 124.6 100.4 47.0 92.7 60.5 REMARK 620 8 MES A 202 S 113.1 134.8 84.1 74.1 119.8 33.1 33.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 201 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 125 NE2 REMARK 620 2 GLU B 129 OE2 93.8 REMARK 620 3 GLU B 129 OE1 92.2 59.3 REMARK 620 4 TYR B 131 OH 171.4 77.8 85.0 REMARK 620 5 HIS B 163 NE2 95.2 90.2 149.1 83.2 REMARK 620 6 MES B 202 O1S 85.4 158.9 99.6 103.1 110.8 REMARK 620 7 MES B 202 S 113.3 134.2 82.4 74.5 121.3 32.3 REMARK 620 8 MES B 202 O2S 141.8 121.9 94.8 46.8 97.6 56.4 31.7 REMARK 620 N 1 2 3 4 5 6 7 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES A 202 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MES B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LA3 RELATED DB: PDB DBREF 4LA2 A 1 192 UNP D0CY60 D0CY60_9RHOB 1 192 DBREF 4LA2 B 1 192 UNP D0CY60 D0CY60_9RHOB 1 192 SEQADV 4LA2 HIS A 193 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS A 194 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS A 195 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS A 196 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS A 197 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS A 198 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS B 193 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS B 194 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS B 195 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS B 196 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS B 197 UNP D0CY60 EXPRESSION TAG SEQADV 4LA2 HIS B 198 UNP D0CY60 EXPRESSION TAG SEQRES 1 A 198 MET THR LEU GLU ASN VAL LEU GLU ALA ALA ARG HIS LEU SEQRES 2 A 198 HIS GLN THR LEU PRO ALA LEU SER GLU PHE GLY ASN TRP SEQRES 3 A 198 PRO THR ASP LEU THR ALA THR GLY LEU GLN PRO ARG ALA SEQRES 4 A 198 ILE PRO ALA THR PRO LEU VAL GLN ALA LEU ASP GLN PRO SEQRES 5 A 198 GLY SER PRO ARG THR THR GLY LEU VAL GLN ALA ILE ARG SEQRES 6 A 198 SER ALA ALA HIS LEU ALA HIS TRP LYS ARG THR TYR THR SEQRES 7 A 198 GLU ALA GLU VAL GLY ALA ASP PHE ARG ASN ARG TYR GLY SEQRES 8 A 198 TYR PHE GLU LEU PHE GLY PRO THR GLY HIS PHE HIS SER SEQRES 9 A 198 THR GLN LEU ARG GLY TYR VAL ALA TYR TRP GLY ALA GLY SEQRES 10 A 198 LEU ASP TYR ASP TRP HIS SER HIS GLN ALA GLU GLU LEU SEQRES 11 A 198 TYR LEU THR LEU ALA GLY GLY ALA VAL PHE LYS VAL ASP SEQRES 12 A 198 GLY GLU ARG ALA PHE VAL GLY ALA GLU GLY THR ARG LEU SEQRES 13 A 198 HIS ALA SER TRP GLN SER HIS ALA MET SER THR GLY ASP SEQRES 14 A 198 GLN PRO ILE LEU THR PHE VAL LEU TRP ARG GLY GLU GLY SEQRES 15 A 198 LEU ASN ALA LEU PRO ARG MET ASP ALA ALA HIS HIS HIS SEQRES 16 A 198 HIS HIS HIS SEQRES 1 B 198 MET THR LEU GLU ASN VAL LEU GLU ALA ALA ARG HIS LEU SEQRES 2 B 198 HIS GLN THR LEU PRO ALA LEU SER GLU PHE GLY ASN TRP SEQRES 3 B 198 PRO THR ASP LEU THR ALA THR GLY LEU GLN PRO ARG ALA SEQRES 4 B 198 ILE PRO ALA THR PRO LEU VAL GLN ALA LEU ASP GLN PRO SEQRES 5 B 198 GLY SER PRO ARG THR THR GLY LEU VAL GLN ALA ILE ARG SEQRES 6 B 198 SER ALA ALA HIS LEU ALA HIS TRP LYS ARG THR TYR THR SEQRES 7 B 198 GLU ALA GLU VAL GLY ALA ASP PHE ARG ASN ARG TYR GLY SEQRES 8 B 198 TYR PHE GLU LEU PHE GLY PRO THR GLY HIS PHE HIS SER SEQRES 9 B 198 THR GLN LEU ARG GLY TYR VAL ALA TYR TRP GLY ALA GLY SEQRES 10 B 198 LEU ASP TYR ASP TRP HIS SER HIS GLN ALA GLU GLU LEU SEQRES 11 B 198 TYR LEU THR LEU ALA GLY GLY ALA VAL PHE LYS VAL ASP SEQRES 12 B 198 GLY GLU ARG ALA PHE VAL GLY ALA GLU GLY THR ARG LEU SEQRES 13 B 198 HIS ALA SER TRP GLN SER HIS ALA MET SER THR GLY ASP SEQRES 14 B 198 GLN PRO ILE LEU THR PHE VAL LEU TRP ARG GLY GLU GLY SEQRES 15 B 198 LEU ASN ALA LEU PRO ARG MET ASP ALA ALA HIS HIS HIS SEQRES 16 B 198 HIS HIS HIS HET ZN A 201 1 HET MES A 202 12 HET ZN B 201 1 HET MES B 202 12 HETNAM ZN ZINC ION HETNAM MES 2-(N-MORPHOLINO)-ETHANESULFONIC ACID FORMUL 3 ZN 2(ZN 2+) FORMUL 4 MES 2(C6 H13 N O4 S) FORMUL 7 HOH *436(H2 O) HELIX 1 1 LEU A 3 LEU A 17 1 15 HELIX 2 2 LEU A 17 GLY A 24 1 8 HELIX 3 3 ALA A 42 ALA A 48 1 7 HELIX 4 4 THR A 57 ALA A 68 1 12 HELIX 5 5 THR A 78 GLY A 83 1 6 HELIX 6 6 GLY A 83 ARG A 89 1 7 HELIX 7 7 THR B 2 LEU B 17 1 16 HELIX 8 8 LEU B 17 GLY B 24 1 8 HELIX 9 9 ALA B 42 ALA B 48 1 7 HELIX 10 10 THR B 57 ALA B 68 1 12 HELIX 11 11 HIS B 69 ALA B 71 5 3 HELIX 12 12 THR B 78 GLY B 83 1 6 HELIX 13 13 GLY B 83 ARG B 89 1 7 SHEET 1 A 7 THR A 31 ALA A 32 0 SHEET 2 A 7 PHE A 102 HIS A 103 -1 O HIS A 103 N THR A 31 SHEET 3 A 7 TYR A 90 GLY A 97 1 N GLY A 97 O PHE A 102 SHEET 4 A 7 ARG A 108 TRP A 114 -1 O TYR A 113 N GLY A 91 SHEET 5 A 7 ILE A 172 ARG A 179 -1 O VAL A 176 N TYR A 110 SHEET 6 A 7 GLU A 128 VAL A 142 -1 N LEU A 134 O LEU A 173 SHEET 7 A 7 THR A 154 HIS A 157 -1 O ARG A 155 N TYR A 131 SHEET 1 B 5 GLU A 145 GLY A 150 0 SHEET 2 B 5 GLU A 128 VAL A 142 -1 N ALA A 138 O VAL A 149 SHEET 3 B 5 HIS A 163 SER A 166 -1 O ALA A 164 N LYS A 141 SHEET 4 B 5 ASP A 119 SER A 124 -1 N TYR A 120 O MET A 165 SHEET 5 B 5 ARG A 188 MET A 189 -1 O ARG A 188 N SER A 124 SHEET 1 C 7 THR B 31 ALA B 32 0 SHEET 2 C 7 PHE B 102 HIS B 103 -1 O HIS B 103 N THR B 31 SHEET 3 C 7 TYR B 90 GLY B 97 1 N GLY B 97 O PHE B 102 SHEET 4 C 7 ARG B 108 TRP B 114 -1 O GLY B 109 N PHE B 96 SHEET 5 C 7 ILE B 172 ARG B 179 -1 O THR B 174 N ALA B 112 SHEET 6 C 7 GLU B 128 VAL B 142 -1 N LEU B 134 O LEU B 173 SHEET 7 C 7 THR B 154 HIS B 157 -1 O ARG B 155 N TYR B 131 SHEET 1 D 5 GLU B 145 GLY B 150 0 SHEET 2 D 5 GLU B 128 VAL B 142 -1 N ALA B 138 O VAL B 149 SHEET 3 D 5 HIS B 163 SER B 166 -1 O SER B 166 N VAL B 139 SHEET 4 D 5 ASP B 119 SER B 124 -1 N TYR B 120 O MET B 165 SHEET 5 D 5 ARG B 188 MET B 189 -1 O ARG B 188 N SER B 124 LINK NE2 HIS A 125 ZN ZN A 201 1555 1555 2.20 LINK OE1 GLU A 129 ZN ZN A 201 1555 1555 2.20 LINK OE2 GLU A 129 ZN ZN A 201 1555 1555 2.30 LINK OH BTYR A 131 ZN ZN A 201 1555 1555 2.55 LINK NE2 HIS A 163 ZN ZN A 201 1555 1555 2.16 LINK ZN ZN A 201 O1S MES A 202 1555 1555 2.38 LINK ZN ZN A 201 O2S MES A 202 1555 1555 2.45 LINK ZN ZN A 201 S MES A 202 1555 1555 2.55 LINK NE2 HIS B 125 ZN ZN B 201 1555 1555 2.23 LINK OE2 GLU B 129 ZN ZN B 201 1555 1555 2.15 LINK OE1 GLU B 129 ZN ZN B 201 1555 1555 2.27 LINK OH BTYR B 131 ZN ZN B 201 1555 1555 2.50 LINK NE2 HIS B 163 ZN ZN B 201 1555 1555 2.19 LINK ZN ZN B 201 O1S MES B 202 1555 1555 2.39 LINK ZN ZN B 201 S MES B 202 1555 1555 2.56 LINK ZN ZN B 201 O2S MES B 202 1555 1555 2.63 SITE 1 AC1 5 HIS A 125 GLU A 129 TYR A 131 HIS A 163 SITE 2 AC1 5 MES A 202 SITE 1 AC2 11 TYR A 90 TYR A 92 TYR A 120 HIS A 123 SITE 2 AC2 11 HIS A 125 GLU A 129 TYR A 131 HIS A 163 SITE 3 AC2 11 PRO A 187 ZN A 201 HOH A 463 SITE 1 AC3 5 HIS B 125 GLU B 129 TYR B 131 HIS B 163 SITE 2 AC3 5 MES B 202 SITE 1 AC4 11 TYR B 92 TYR B 110 TYR B 120 HIS B 123 SITE 2 AC4 11 HIS B 125 GLU B 129 TYR B 131 HIS B 163 SITE 3 AC4 11 PRO B 187 ZN B 201 HOH B 428 CRYST1 48.383 85.303 87.457 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020668 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011723 0.000000 0.00000 SCALE3 0.000000 0.000000 0.011434 0.00000