HEADER LYASE 19-JUN-13 4LA5 TITLE CRYSTAL STRUCTURE OF 2-METHYLISOBORNEOL SYNTHASE FROM STREPTOMYCES TITLE 2 COELICOLOR A3(2) COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-METHYLISOBORNEOL SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-MIB SYNTHASE; COMPND 5 EC: 4.2.3.118; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2); SOURCE 5 GENE: SC1A4.08, SCBAC12C8.01, SCO7700; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TERPENOID BIOSYNTHESIS, BIOSYNTHESIS, ISOPRENOID SYNTHASE FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KOKSAL,D.W.CHRISTIANSON REVDAT 3 20-SEP-23 4LA5 1 SEQADV REVDAT 2 25-DEC-13 4LA5 1 JRNL REVDAT 1 31-JUL-13 4LA5 0 JRNL AUTH M.KOKSAL,W.K.CHOU,D.E.CANE,D.W.CHRISTIANSON JRNL TITL UNEXPECTED REACTIVITY OF 2-FLUOROLINALYL DIPHOSPHATE IN THE JRNL TITL 2 ACTIVE SITE OF CRYSTALLINE 2-METHYLISOBORNEOL SYNTHASE. JRNL REF BIOCHEMISTRY V. 52 5247 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23844678 JRNL DOI 10.1021/BI400797C REMARK 2 REMARK 2 RESOLUTION. 1.85 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.85 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 49.73 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.9 REMARK 3 NUMBER OF REFLECTIONS : 42739 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.187 REMARK 3 R VALUE (WORKING SET) : 0.186 REMARK 3 FREE R VALUE : 0.215 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.340 REMARK 3 FREE R VALUE TEST SET COUNT : 1855 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 49.7435 - 4.3476 0.99 3590 166 0.1711 0.1899 REMARK 3 2 4.3476 - 3.4511 0.99 3400 156 0.1608 0.1751 REMARK 3 3 3.4511 - 3.0149 0.99 3338 155 0.1828 0.1983 REMARK 3 4 3.0149 - 2.7393 0.98 3323 149 0.1865 0.2093 REMARK 3 5 2.7393 - 2.5429 0.98 3276 141 0.1862 0.2205 REMARK 3 6 2.5429 - 2.3930 0.97 3221 154 0.1845 0.2226 REMARK 3 7 2.3930 - 2.2732 0.97 3211 144 0.1873 0.2563 REMARK 3 8 2.2732 - 2.1742 0.95 3166 138 0.1984 0.2554 REMARK 3 9 2.1742 - 2.0905 0.94 3081 148 0.2081 0.2700 REMARK 3 10 2.0905 - 2.0184 0.92 3023 138 0.2109 0.2567 REMARK 3 11 2.0184 - 1.9553 0.88 2883 129 0.2219 0.2706 REMARK 3 12 1.9553 - 1.8994 0.84 2770 121 0.2497 0.2570 REMARK 3 13 1.8994 - 1.8494 0.79 2602 116 0.2691 0.3515 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.41 REMARK 3 B_SOL : 48.43 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.230 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.690 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 30.25 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 36.30 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -3.52720 REMARK 3 B22 (A**2) : -3.52720 REMARK 3 B33 (A**2) : 7.05440 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.035 2611 REMARK 3 ANGLE : 2.402 3570 REMARK 3 CHIRALITY : 0.201 377 REMARK 3 PLANARITY : 0.015 475 REMARK 3 DIHEDRAL : 17.900 924 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LA5 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080373. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 45481 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.850 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 12.50 REMARK 200 R MERGE (I) : 0.07500 REMARK 200 R SYM (I) : 0.07500 REMARK 200 FOR THE DATA SET : 35.7140 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.85 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.92 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.1 REMARK 200 DATA REDUNDANCY IN SHELL : 11.00 REMARK 200 R MERGE FOR SHELL (I) : 0.01168 REMARK 200 R SYM FOR SHELL (I) : 0.01168 REMARK 200 FOR SHELL : 2.110 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3V1V REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.44 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS (PH 6.5), 25% REMARK 280 POLYETHYLENE GLYCOL 3350, 200 MM MGCL2, VAPOR DIFFUSION, SITTING REMARK 280 DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.44550 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.66825 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.22275 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.44550 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.22275 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.66825 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5090 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 24410 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -36.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 26.22275 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 GLU A 13 REMARK 465 GLN A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 THR A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 THR A 20 REMARK 465 THR A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ASP A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 29 REMARK 465 ILE A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 ALA A 33 REMARK 465 SER A 34 REMARK 465 VAL A 35 REMARK 465 THR A 36 REMARK 465 SER A 37 REMARK 465 ALA A 38 REMARK 465 ALA A 39 REMARK 465 SER A 40 REMARK 465 ASP A 41 REMARK 465 PHE A 42 REMARK 465 LEU A 43 REMARK 465 ALA A 44 REMARK 465 ALA A 45 REMARK 465 LEU A 46 REMARK 465 HIS A 47 REMARK 465 PRO A 48 REMARK 465 PRO A 49 REMARK 465 VAL A 50 REMARK 465 THR A 51 REMARK 465 VAL A 52 REMARK 465 PRO A 53 REMARK 465 ASP A 54 REMARK 465 PRO A 55 REMARK 465 ALA A 56 REMARK 465 PRO A 57 REMARK 465 PRO A 58 REMARK 465 PRO A 59 REMARK 465 PRO A 60 REMARK 465 PRO A 61 REMARK 465 ALA A 62 REMARK 465 PRO A 63 REMARK 465 ALA A 64 REMARK 465 ALA A 65 REMARK 465 GLY A 66 REMARK 465 ASN A 67 REMARK 465 PRO A 68 REMARK 465 PRO A 69 REMARK 465 ASP A 70 REMARK 465 THR A 71 REMARK 465 VAL A 72 REMARK 465 THR A 73 REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 SER A 76 REMARK 465 VAL A 77 REMARK 465 LEU A 78 REMARK 465 GLN A 79 REMARK 465 ARG A 80 REMARK 465 ILE A 81 REMARK 465 LEU A 82 REMARK 465 ARG A 83 REMARK 465 GLY A 84 REMARK 465 PRO A 85 REMARK 465 THR A 86 REMARK 465 GLY A 87 REMARK 465 PRO A 88 REMARK 465 GLY A 89 REMARK 465 THR A 90 REMARK 465 THR A 91 REMARK 465 SER A 92 REMARK 465 LEU A 93 REMARK 465 ALA A 94 REMARK 465 PRO A 95 REMARK 465 ALA A 96 REMARK 465 VAL A 97 REMARK 465 ARG A 98 REMARK 465 TYR A 99 REMARK 465 GLY A 100 REMARK 465 ARG A 101 REMARK 465 GLN A 102 REMARK 465 PRO A 103 REMARK 465 GLY A 104 REMARK 465 PRO A 105 REMARK 465 GLU A 106 REMARK 465 ALA A 107 REMARK 465 PRO A 108 REMARK 465 ALA A 109 REMARK 465 SER A 110 REMARK 465 GLU A 155 REMARK 465 GLU A 156 REMARK 465 TRP A 157 REMARK 465 GLU A 158 REMARK 465 GLY A 159 REMARK 465 GLN A 160 REMARK 465 GLU A 202 REMARK 465 ASP A 203 REMARK 465 HIS A 204 REMARK 465 GLY A 205 REMARK 465 GLY A 206 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 NH2 ARG A 257 O HOH A 598 1.57 REMARK 500 CZ ARG A 257 O HOH A 598 2.03 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 ARG A 144 CG ARG A 144 CD 0.150 REMARK 500 ARG A 188 CB ARG A 188 CG 0.180 REMARK 500 GLU A 193 CG GLU A 193 CD 0.139 REMARK 500 GLU A 193 CD GLU A 193 OE2 0.099 REMARK 500 TRP A 235 CG TRP A 235 CD1 0.091 REMARK 500 SER A 238 CB SER A 238 OG 0.088 REMARK 500 ARG A 246 CG ARG A 246 CD 0.155 REMARK 500 SER A 250 CA SER A 250 CB 0.092 REMARK 500 VAL A 256 CB VAL A 256 CG2 0.146 REMARK 500 ALA A 259 CA ALA A 259 CB 0.146 REMARK 500 SER A 264 CB SER A 264 OG 0.082 REMARK 500 TYR A 267 CD1 TYR A 267 CE1 0.104 REMARK 500 ARG A 268 CB ARG A 268 CG 0.215 REMARK 500 GLU A 295 CG GLU A 295 CD 0.134 REMARK 500 ARG A 332 CZ ARG A 332 NH1 0.095 REMARK 500 GLN A 372 CB GLN A 372 CG 0.198 REMARK 500 GLN A 372 CG GLN A 372 CD 0.167 REMARK 500 GLU A 384 CG GLU A 384 CD 0.110 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG A 140 NE - CZ - NH1 ANGL. DEV. = -3.8 DEGREES REMARK 500 ARG A 144 NE - CZ - NH1 ANGL. DEV. = 3.4 DEGREES REMARK 500 ARG A 188 NE - CZ - NH1 ANGL. DEV. = 6.1 DEGREES REMARK 500 ARG A 188 NE - CZ - NH2 ANGL. DEV. = -5.5 DEGREES REMARK 500 ARG A 214 NE - CZ - NH1 ANGL. DEV. = 3.1 DEGREES REMARK 500 PHE A 225 CB - CG - CD2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 257 NE - CZ - NH1 ANGL. DEV. = 5.3 DEGREES REMARK 500 ARG A 257 NE - CZ - NH2 ANGL. DEV. = -4.3 DEGREES REMARK 500 ARG A 268 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 ARG A 332 NE - CZ - NH2 ANGL. DEV. = -4.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 115 117.91 -38.32 REMARK 500 ASP A 131 107.35 -45.82 REMARK 500 SER A 227 -158.69 -152.61 REMARK 500 SER A 356 143.81 -29.81 REMARK 500 PRO A 357 88.95 -56.20 REMARK 500 GLN A 372 74.68 23.06 REMARK 500 PRO A 405 39.31 -83.77 REMARK 500 THR A 431 -8.71 -58.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V1V RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH MG2+ AND GERANYL-S-THIOLODIPHOSPHATE. REMARK 900 RELATED ID: 3V1X RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH MG2+ AND 2-FLUOROGERANYL DIPHOSPHATE. REMARK 900 RELATED ID: 4LA6 RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH MG2+ AND 2-FLUOROLINALYL DIPHOSPHATE. DBREF 4LA5 A 1 440 UNP Q9F1Y6 MIBS_STRCO 1 440 SEQADV 4LA5 MET A -20 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 GLY A -19 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 SER A -18 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 SER A -17 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 HIS A -16 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 HIS A -15 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 HIS A -14 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 HIS A -13 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 HIS A -12 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 HIS A -11 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 SER A -10 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 SER A -9 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 GLY A -8 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 LEU A -7 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 VAL A -6 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 PRO A -5 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 ARG A -4 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 GLY A -3 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 SER A -2 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 HIS A -1 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA5 MET A 0 UNP Q9F1Y6 EXPRESSION TAG SEQRES 1 A 461 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 461 LEU VAL PRO ARG GLY SER HIS MET MET PRO ASP SER GLY SEQRES 3 A 461 THR LEU GLY THR PRO PRO PRO GLU GLN GLY PRO THR PRO SEQRES 4 A 461 PRO THR THR LEU PRO ASP VAL PRO ALA PRO VAL ILE PRO SEQRES 5 A 461 SER ALA SER VAL THR SER ALA ALA SER ASP PHE LEU ALA SEQRES 6 A 461 ALA LEU HIS PRO PRO VAL THR VAL PRO ASP PRO ALA PRO SEQRES 7 A 461 PRO PRO PRO PRO ALA PRO ALA ALA GLY ASN PRO PRO ASP SEQRES 8 A 461 THR VAL THR GLY ASP SER VAL LEU GLN ARG ILE LEU ARG SEQRES 9 A 461 GLY PRO THR GLY PRO GLY THR THR SER LEU ALA PRO ALA SEQRES 10 A 461 VAL ARG TYR GLY ARG GLN PRO GLY PRO GLU ALA PRO ALA SEQRES 11 A 461 SER ALA PRO PRO ALA ALA GLY ARG ALA VAL PRO GLY LEU SEQRES 12 A 461 TYR HIS HIS PRO VAL PRO GLU PRO ASP PRO VAL ARG VAL SEQRES 13 A 461 GLU GLU VAL SER ARG ARG ILE LYS ARG TRP ALA GLU ASP SEQRES 14 A 461 GLU VAL GLN LEU TYR PRO GLU GLU TRP GLU GLY GLN PHE SEQRES 15 A 461 ASP GLY PHE SER VAL GLY ARG TYR MET VAL GLY CYS HIS SEQRES 16 A 461 PRO ASP ALA PRO THR VAL ASP HIS LEU MET LEU ALA THR SEQRES 17 A 461 ARG LEU MET VAL ALA GLU ASN ALA VAL ASP ASP CYS TYR SEQRES 18 A 461 CYS GLU ASP HIS GLY GLY SER PRO VAL GLY LEU GLY GLY SEQRES 19 A 461 ARG LEU LEU LEU ALA HIS THR ALA ILE ASP HIS PHE HIS SEQRES 20 A 461 SER THR ALA GLU TYR THR PRO THR TRP GLN ALA SER LEU SEQRES 21 A 461 ALA ALA ASP ALA PRO ARG ARG ALA TYR ASP SER ALA MET SEQRES 22 A 461 GLY TYR PHE VAL ARG ALA ALA THR PRO SER GLN SER ASP SEQRES 23 A 461 ARG TYR ARG HIS ASP MET ALA ARG LEU HIS LEU GLY TYR SEQRES 24 A 461 LEU ALA GLU GLY ALA TRP ALA GLN THR GLY HIS VAL PRO SEQRES 25 A 461 GLU VAL TRP GLU TYR LEU ALA MET ARG GLN PHE ASN ASN SEQRES 26 A 461 PHE ARG PRO CYS PRO THR ILE THR ASP THR VAL GLY GLY SEQRES 27 A 461 TYR GLU LEU PRO ALA ASP LEU HIS ALA ARG PRO ASP MET SEQRES 28 A 461 GLN ARG VAL ILE ALA LEU ALA GLY ASN ALA THR THR ILE SEQRES 29 A 461 VAL ASN ASP LEU TYR SER TYR THR LYS GLU LEU ASN SER SEQRES 30 A 461 PRO GLY ARG HIS LEU ASN LEU PRO VAL VAL ILE ALA GLU SEQRES 31 A 461 ARG GLU GLN LEU CYS GLU ARG ASP ALA TYR LEU LYS ALA SEQRES 32 A 461 VAL GLU VAL HIS ASN GLU LEU GLN HIS SER PHE GLU ALA SEQRES 33 A 461 ALA ALA ALA ASP LEU ALA GLU ALA CYS PRO LEU PRO PRO SEQRES 34 A 461 VAL LEU ARG PHE LEU ARG GLY VAL ALA ALA TRP VAL ASP SEQRES 35 A 461 GLY ASN HIS ASP TRP HIS ARG THR ASN THR TYR ARG TYR SEQRES 36 A 461 SER LEU PRO ASP PHE TRP FORMUL 2 HOH *145(H2 O) HELIX 1 1 ASP A 131 GLU A 149 1 19 HELIX 2 2 ASP A 162 HIS A 174 1 13 HELIX 3 3 THR A 179 CYS A 201 1 23 HELIX 4 4 GLY A 210 THR A 220 1 11 HELIX 5 5 TYR A 231 LEU A 239 1 9 HELIX 6 6 ASP A 242 ALA A 259 1 18 HELIX 7 7 THR A 260 THR A 287 1 28 HELIX 8 8 GLU A 292 ASN A 303 1 12 HELIX 9 9 CYS A 308 THR A 310 5 3 HELIX 10 10 ILE A 311 GLY A 317 1 7 HELIX 11 11 PRO A 321 ALA A 326 1 6 HELIX 12 12 ARG A 327 SER A 349 1 23 HELIX 13 13 SER A 349 SER A 356 1 8 HELIX 14 14 ASN A 362 GLU A 371 1 10 HELIX 15 15 CYS A 374 CYS A 404 1 31 HELIX 16 16 LEU A 406 ASN A 430 1 25 HELIX 17 17 THR A 431 ARG A 433 5 3 CRYST1 99.451 99.451 104.891 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010055 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010055 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009534 0.00000