HEADER LYASE 19-JUN-13 4LA6 TITLE CRYSTAL STRUCTURE OF 2-METHYLISOBORNEOL SYNTHASE FROM STREPTOMYCES TITLE 2 COELICOLOR A3(2) IN COMPLEX WITH MG2+ AND 2-FLUORONERYL DIPHOSPHATE COMPND MOL_ID: 1; COMPND 2 MOLECULE: 2-METHYLISOBORNEOL SYNTHASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: 2-MIB SYNTHASE; COMPND 5 EC: 4.2.3.118; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOMYCES COELICOLOR; SOURCE 3 ORGANISM_TAXID: 100226; SOURCE 4 STRAIN: A3(2); SOURCE 5 GENE: SC1A4.08, SCBAC12C8.01, SCO7700; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET28A KEYWDS TERPENOID BIOSYNTHESIS, BIOSYNTHESIS, ISOPRENOID SYNTHASE FOLD, LYASE EXPDTA X-RAY DIFFRACTION AUTHOR M.KOKSAL,D.W.CHRISTIANSON REVDAT 3 20-SEP-23 4LA6 1 REMARK SEQADV LINK REVDAT 2 25-DEC-13 4LA6 1 JRNL REVDAT 1 31-JUL-13 4LA6 0 JRNL AUTH M.KOKSAL,W.K.CHOU,D.E.CANE,D.W.CHRISTIANSON JRNL TITL UNEXPECTED REACTIVITY OF 2-FLUOROLINALYL DIPHOSPHATE IN THE JRNL TITL 2 ACTIVE SITE OF CRYSTALLINE 2-METHYLISOBORNEOL SYNTHASE. JRNL REF BIOCHEMISTRY V. 52 5247 2013 JRNL REFN ISSN 0006-2960 JRNL PMID 23844678 JRNL DOI 10.1021/BI400797C REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.46 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.170 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.1 REMARK 3 NUMBER OF REFLECTIONS : 34443 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.174 REMARK 3 R VALUE (WORKING SET) : 0.173 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.520 REMARK 3 FREE R VALUE TEST SET COUNT : 1902 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 46.4688 - 4.8211 0.99 2635 158 0.1726 0.1976 REMARK 3 2 4.8211 - 3.8272 0.99 2464 144 0.1368 0.1474 REMARK 3 3 3.8272 - 3.3436 0.99 2439 144 0.1668 0.1803 REMARK 3 4 3.3436 - 3.0379 0.98 2389 139 0.1718 0.2026 REMARK 3 5 3.0379 - 2.8202 0.97 2371 135 0.1768 0.2248 REMARK 3 6 2.8202 - 2.6540 0.97 2361 134 0.1754 0.1700 REMARK 3 7 2.6540 - 2.5211 0.96 2324 148 0.1713 0.2149 REMARK 3 8 2.5211 - 2.4113 0.96 2294 135 0.1665 0.2219 REMARK 3 9 2.4113 - 2.3185 0.94 2273 126 0.1719 0.2103 REMARK 3 10 2.3185 - 2.2385 0.94 2271 125 0.1735 0.2179 REMARK 3 11 2.2385 - 2.1685 0.93 2232 136 0.1771 0.2174 REMARK 3 12 2.1685 - 2.1065 0.92 2220 117 0.2006 0.2065 REMARK 3 13 2.1065 - 2.0511 0.90 2167 128 0.2180 0.3023 REMARK 3 14 2.0511 - 2.0010 0.88 2101 133 0.2535 0.3045 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : 0.32 REMARK 3 B_SOL : 41.73 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 19.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.84 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 35.20 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.96070 REMARK 3 B22 (A**2) : -5.96070 REMARK 3 B33 (A**2) : 11.92140 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.007 2694 REMARK 3 ANGLE : 1.086 3683 REMARK 3 CHIRALITY : 0.070 380 REMARK 3 PLANARITY : 0.005 491 REMARK 3 DIHEDRAL : 17.513 964 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LA6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080374. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X25 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.100 REMARK 200 MONOCHROMATOR : SI(111) REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 36220 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.40 REMARK 200 R MERGE (I) : 0.12700 REMARK 200 R SYM (I) : 0.12700 REMARK 200 FOR THE DATA SET : 19.2500 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.07 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.8 REMARK 200 DATA REDUNDANCY IN SHELL : 9.70 REMARK 200 R MERGE FOR SHELL (I) : 0.85700 REMARK 200 R SYM FOR SHELL (I) : 0.85700 REMARK 200 FOR SHELL : 2.930 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX REMARK 200 STARTING MODEL: 3V1X REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM BIS-TRIS (PH 6.5), 25% REMARK 280 POLYETHYLENE GLYCOL 3350, 200 MM LI2SO4, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y,X,Z+3/4 REMARK 290 4555 Y,-X,Z+1/4 REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z+1/2 REMARK 290 7555 Y,X,-Z+1/4 REMARK 290 8555 -Y,-X,-Z+3/4 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 52.53950 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 78.80925 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 26.26975 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 52.53950 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 26.26975 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 78.80925 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5550 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 23760 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 -26.26975 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 607 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -20 REMARK 465 GLY A -19 REMARK 465 SER A -18 REMARK 465 SER A -17 REMARK 465 HIS A -16 REMARK 465 HIS A -15 REMARK 465 HIS A -14 REMARK 465 HIS A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 SER A -10 REMARK 465 SER A -9 REMARK 465 GLY A -8 REMARK 465 LEU A -7 REMARK 465 VAL A -6 REMARK 465 PRO A -5 REMARK 465 ARG A -4 REMARK 465 GLY A -3 REMARK 465 SER A -2 REMARK 465 HIS A -1 REMARK 465 MET A 0 REMARK 465 MET A 1 REMARK 465 PRO A 2 REMARK 465 ASP A 3 REMARK 465 SER A 4 REMARK 465 GLY A 5 REMARK 465 THR A 6 REMARK 465 LEU A 7 REMARK 465 GLY A 8 REMARK 465 THR A 9 REMARK 465 PRO A 10 REMARK 465 PRO A 11 REMARK 465 PRO A 12 REMARK 465 GLU A 13 REMARK 465 GLN A 14 REMARK 465 GLY A 15 REMARK 465 PRO A 16 REMARK 465 THR A 17 REMARK 465 PRO A 18 REMARK 465 PRO A 19 REMARK 465 THR A 20 REMARK 465 THR A 21 REMARK 465 LEU A 22 REMARK 465 PRO A 23 REMARK 465 ASP A 24 REMARK 465 VAL A 25 REMARK 465 PRO A 26 REMARK 465 ALA A 27 REMARK 465 PRO A 28 REMARK 465 VAL A 29 REMARK 465 ILE A 30 REMARK 465 PRO A 31 REMARK 465 SER A 32 REMARK 465 ALA A 33 REMARK 465 SER A 34 REMARK 465 VAL A 35 REMARK 465 THR A 36 REMARK 465 SER A 37 REMARK 465 ALA A 38 REMARK 465 ALA A 39 REMARK 465 SER A 40 REMARK 465 ASP A 41 REMARK 465 PHE A 42 REMARK 465 LEU A 43 REMARK 465 ALA A 44 REMARK 465 ALA A 45 REMARK 465 LEU A 46 REMARK 465 HIS A 47 REMARK 465 PRO A 48 REMARK 465 PRO A 49 REMARK 465 VAL A 50 REMARK 465 THR A 51 REMARK 465 VAL A 52 REMARK 465 PRO A 53 REMARK 465 ASP A 54 REMARK 465 PRO A 55 REMARK 465 ALA A 56 REMARK 465 PRO A 57 REMARK 465 PRO A 58 REMARK 465 PRO A 59 REMARK 465 PRO A 60 REMARK 465 PRO A 61 REMARK 465 ALA A 62 REMARK 465 PRO A 63 REMARK 465 ALA A 64 REMARK 465 ALA A 65 REMARK 465 GLY A 66 REMARK 465 ASN A 67 REMARK 465 PRO A 68 REMARK 465 PRO A 69 REMARK 465 ASP A 70 REMARK 465 THR A 71 REMARK 465 VAL A 72 REMARK 465 THR A 73 REMARK 465 GLY A 74 REMARK 465 ASP A 75 REMARK 465 SER A 76 REMARK 465 VAL A 77 REMARK 465 LEU A 78 REMARK 465 GLN A 79 REMARK 465 ARG A 80 REMARK 465 ILE A 81 REMARK 465 LEU A 82 REMARK 465 ARG A 83 REMARK 465 GLY A 84 REMARK 465 PRO A 85 REMARK 465 THR A 86 REMARK 465 GLY A 87 REMARK 465 PRO A 88 REMARK 465 GLY A 89 REMARK 465 THR A 90 REMARK 465 THR A 91 REMARK 465 SER A 92 REMARK 465 LEU A 93 REMARK 465 ALA A 94 REMARK 465 PRO A 95 REMARK 465 ALA A 96 REMARK 465 VAL A 97 REMARK 465 ARG A 98 REMARK 465 TYR A 99 REMARK 465 GLY A 100 REMARK 465 ARG A 101 REMARK 465 GLN A 102 REMARK 465 PRO A 103 REMARK 465 GLY A 104 REMARK 465 PRO A 105 REMARK 465 GLU A 106 REMARK 465 ALA A 107 REMARK 465 PRO A 108 REMARK 465 ALA A 109 REMARK 465 SER A 110 REMARK 465 ALA A 111 REMARK 465 PRO A 112 REMARK 465 PRO A 113 REMARK 465 ALA A 114 REMARK 465 ALA A 115 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 131 105.55 -49.44 REMARK 500 SER A 227 -165.72 -160.19 REMARK 500 GLN A 372 65.85 37.32 REMARK 500 PRO A 405 38.12 -79.46 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 197 OD2 REMARK 620 2 LA6 A 503 O1A 93.2 REMARK 620 3 HOH A 602 O 97.4 169.2 REMARK 620 4 HOH A 603 O 163.8 84.4 84.8 REMARK 620 5 HOH A 604 O 92.2 77.9 99.3 71.6 REMARK 620 6 HOH A 605 O 100.2 84.5 95.8 95.5 159.0 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 501 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASN A 345 OD1 REMARK 620 2 SER A 349 OG 91.6 REMARK 620 3 GLU A 353 OE2 173.6 89.4 REMARK 620 4 LA6 A 503 O2A 95.4 170.8 84.3 REMARK 620 5 LA6 A 503 O1B 95.0 89.8 91.4 83.7 REMARK 620 6 HOH A 601 O 94.1 90.8 79.6 94.5 170.9 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE LA6 A 503 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 3V1V RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH MG2+ AND GERANYL-S-THIOLODIPHOSPHATE. REMARK 900 RELATED ID: 3V1X RELATED DB: PDB REMARK 900 SAME ENZYME IN COMPLEX WITH MG2+ AND 2-FLUOROGERANYL DIPHOSPHATE. REMARK 900 RELATED ID: 4LA5 RELATED DB: PDB REMARK 900 SAME ENZYME IN UNLIGANDED STATE. DBREF 4LA6 A 1 440 UNP Q9F1Y6 MIBS_STRCO 1 440 SEQADV 4LA6 MET A -20 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 GLY A -19 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 SER A -18 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 SER A -17 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 HIS A -16 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 HIS A -15 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 HIS A -14 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 HIS A -13 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 HIS A -12 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 HIS A -11 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 SER A -10 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 SER A -9 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 GLY A -8 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 LEU A -7 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 VAL A -6 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 PRO A -5 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 ARG A -4 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 GLY A -3 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 SER A -2 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 HIS A -1 UNP Q9F1Y6 EXPRESSION TAG SEQADV 4LA6 MET A 0 UNP Q9F1Y6 EXPRESSION TAG SEQRES 1 A 461 MET GLY SER SER HIS HIS HIS HIS HIS HIS SER SER GLY SEQRES 2 A 461 LEU VAL PRO ARG GLY SER HIS MET MET PRO ASP SER GLY SEQRES 3 A 461 THR LEU GLY THR PRO PRO PRO GLU GLN GLY PRO THR PRO SEQRES 4 A 461 PRO THR THR LEU PRO ASP VAL PRO ALA PRO VAL ILE PRO SEQRES 5 A 461 SER ALA SER VAL THR SER ALA ALA SER ASP PHE LEU ALA SEQRES 6 A 461 ALA LEU HIS PRO PRO VAL THR VAL PRO ASP PRO ALA PRO SEQRES 7 A 461 PRO PRO PRO PRO ALA PRO ALA ALA GLY ASN PRO PRO ASP SEQRES 8 A 461 THR VAL THR GLY ASP SER VAL LEU GLN ARG ILE LEU ARG SEQRES 9 A 461 GLY PRO THR GLY PRO GLY THR THR SER LEU ALA PRO ALA SEQRES 10 A 461 VAL ARG TYR GLY ARG GLN PRO GLY PRO GLU ALA PRO ALA SEQRES 11 A 461 SER ALA PRO PRO ALA ALA GLY ARG ALA VAL PRO GLY LEU SEQRES 12 A 461 TYR HIS HIS PRO VAL PRO GLU PRO ASP PRO VAL ARG VAL SEQRES 13 A 461 GLU GLU VAL SER ARG ARG ILE LYS ARG TRP ALA GLU ASP SEQRES 14 A 461 GLU VAL GLN LEU TYR PRO GLU GLU TRP GLU GLY GLN PHE SEQRES 15 A 461 ASP GLY PHE SER VAL GLY ARG TYR MET VAL GLY CYS HIS SEQRES 16 A 461 PRO ASP ALA PRO THR VAL ASP HIS LEU MET LEU ALA THR SEQRES 17 A 461 ARG LEU MET VAL ALA GLU ASN ALA VAL ASP ASP CYS TYR SEQRES 18 A 461 CYS GLU ASP HIS GLY GLY SER PRO VAL GLY LEU GLY GLY SEQRES 19 A 461 ARG LEU LEU LEU ALA HIS THR ALA ILE ASP HIS PHE HIS SEQRES 20 A 461 SER THR ALA GLU TYR THR PRO THR TRP GLN ALA SER LEU SEQRES 21 A 461 ALA ALA ASP ALA PRO ARG ARG ALA TYR ASP SER ALA MET SEQRES 22 A 461 GLY TYR PHE VAL ARG ALA ALA THR PRO SER GLN SER ASP SEQRES 23 A 461 ARG TYR ARG HIS ASP MET ALA ARG LEU HIS LEU GLY TYR SEQRES 24 A 461 LEU ALA GLU GLY ALA TRP ALA GLN THR GLY HIS VAL PRO SEQRES 25 A 461 GLU VAL TRP GLU TYR LEU ALA MET ARG GLN PHE ASN ASN SEQRES 26 A 461 PHE ARG PRO CYS PRO THR ILE THR ASP THR VAL GLY GLY SEQRES 27 A 461 TYR GLU LEU PRO ALA ASP LEU HIS ALA ARG PRO ASP MET SEQRES 28 A 461 GLN ARG VAL ILE ALA LEU ALA GLY ASN ALA THR THR ILE SEQRES 29 A 461 VAL ASN ASP LEU TYR SER TYR THR LYS GLU LEU ASN SER SEQRES 30 A 461 PRO GLY ARG HIS LEU ASN LEU PRO VAL VAL ILE ALA GLU SEQRES 31 A 461 ARG GLU GLN LEU CYS GLU ARG ASP ALA TYR LEU LYS ALA SEQRES 32 A 461 VAL GLU VAL HIS ASN GLU LEU GLN HIS SER PHE GLU ALA SEQRES 33 A 461 ALA ALA ALA ASP LEU ALA GLU ALA CYS PRO LEU PRO PRO SEQRES 34 A 461 VAL LEU ARG PHE LEU ARG GLY VAL ALA ALA TRP VAL ASP SEQRES 35 A 461 GLY ASN HIS ASP TRP HIS ARG THR ASN THR TYR ARG TYR SEQRES 36 A 461 SER LEU PRO ASP PHE TRP HET MG A 501 1 HET MG A 502 1 HET LA6 A 503 20 HETNAM MG MAGNESIUM ION HETNAM LA6 (2E)-2-FLUORO-3,7-DIMETHYLOCTA-2,6-DIEN-1-YL HETNAM 2 LA6 TRIHYDROGEN DIPHOSPHATE FORMUL 2 MG 2(MG 2+) FORMUL 4 LA6 C10 H19 F O7 P2 FORMUL 5 HOH *223(H2 O) HELIX 1 1 ASP A 131 GLU A 149 1 19 HELIX 2 2 PRO A 154 GLU A 156 5 3 HELIX 3 3 TRP A 157 PHE A 164 1 8 HELIX 4 4 SER A 165 HIS A 174 1 10 HELIX 5 5 THR A 179 TYR A 200 1 22 HELIX 6 6 GLY A 210 THR A 220 1 11 HELIX 7 7 TYR A 231 LEU A 239 1 9 HELIX 8 8 ASP A 242 ALA A 259 1 18 HELIX 9 9 THR A 260 THR A 287 1 28 HELIX 10 10 GLU A 292 ASN A 303 1 12 HELIX 11 11 CYS A 308 THR A 310 5 3 HELIX 12 12 ILE A 311 GLY A 317 1 7 HELIX 13 13 PRO A 321 ALA A 326 1 6 HELIX 14 14 ARG A 327 LEU A 354 1 28 HELIX 15 15 ASN A 362 GLU A 371 1 10 HELIX 16 16 CYS A 374 CYS A 404 1 31 HELIX 17 17 LEU A 406 ASN A 430 1 25 LINK OD2 ASP A 197 MG MG A 502 1555 1555 2.44 LINK OD1 ASN A 345 MG MG A 501 1555 1555 2.12 LINK OG SER A 349 MG MG A 501 1555 1555 2.27 LINK OE2 GLU A 353 MG MG A 501 1555 1555 2.20 LINK MG MG A 501 O2A LA6 A 503 1555 1555 2.11 LINK MG MG A 501 O1B LA6 A 503 1555 1555 2.17 LINK MG MG A 501 O HOH A 601 1555 1555 2.23 LINK MG MG A 502 O1A LA6 A 503 1555 1555 2.24 LINK MG MG A 502 O HOH A 602 1555 1555 2.30 LINK MG MG A 502 O HOH A 603 1555 1555 2.39 LINK MG MG A 502 O HOH A 604 1555 1555 2.43 LINK MG MG A 502 O HOH A 605 1555 1555 2.41 SITE 1 AC1 5 ASN A 345 SER A 349 GLU A 353 LA6 A 503 SITE 2 AC1 5 HOH A 601 SITE 1 AC2 6 ASP A 197 LA6 A 503 HOH A 602 HOH A 603 SITE 2 AC2 6 HOH A 604 HOH A 605 SITE 1 AC3 20 GLU A 193 ASP A 197 TYR A 278 ARG A 300 SITE 2 AC3 20 ASN A 303 ASN A 304 PHE A 305 ASN A 345 SITE 3 AC3 20 SER A 349 LYS A 352 GLU A 353 ARG A 433 SITE 4 AC3 20 TYR A 434 MG A 501 MG A 502 HOH A 604 SITE 5 AC3 20 HOH A 718 HOH A 768 HOH A 777 HOH A 809 CRYST1 99.462 99.462 105.079 90.00 90.00 90.00 P 43 2 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.010054 0.000000 0.000000 0.00000 SCALE2 0.000000 0.010054 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009517 0.00000