HEADER TRANSFERASE/DNA 20-JUN-13 4LB6 TITLE CRYSTAL STRUCTURE OF PKZ ZALPHA IN COMPLEX WITH DS(CG)6 (TETRAGONAL TITLE 2 FORM) COMPND MOL_ID: 1; COMPND 2 MOLECULE: PROTEIN KINASE CONTAINING Z-DNA BINDING DOMAINS; COMPND 3 CHAIN: B; COMPND 4 FRAGMENT: ZALPHA DOMAIN, UNP RESIDUES 5-70; COMPND 5 SYNONYM: UNCHARACTERIZED PROTEIN, Z-DNA BINDING PROTEIN KINASE; COMPND 6 EC: 2.7.11.1; COMPND 7 ENGINEERED: YES; COMPND 8 MOL_ID: 2; COMPND 9 MOLECULE: 5'-D(*TP*CP*GP*CP*GP*CP*GP*CP*GP*CP*GP*CP*G)-3'; COMPND 10 CHAIN: C; COMPND 11 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: DANIO RERIO; SOURCE 3 ORGANISM_COMMON: LEOPARD DANIO,ZEBRA DANIO,ZEBRA FISH; SOURCE 4 ORGANISM_TAXID: 7955; SOURCE 5 GENE: PKZ; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21 (DE3); SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PET28B; SOURCE 10 MOL_ID: 2; SOURCE 11 SYNTHETIC: YES; SOURCE 12 OTHER_DETAILS: SYNTHETIC OLIGONUCLEOTIDE KEYWDS WHTH, ZALPHA, ZBD, KINASE, INNATE IMMUNITY, Z-DNA, Z-RNA, EIF2A, KEYWDS 2 TRANSFERASE-DNA COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR M.DE ROSA,S.ZACARIAS,A.ATHANASIADIS REVDAT 3 20-SEP-23 4LB6 1 SEQADV REVDAT 2 04-DEC-13 4LB6 1 JRNL REVDAT 1 18-SEP-13 4LB6 0 JRNL AUTH M.DE ROSA,S.ZACARIAS,A.ATHANASIADIS JRNL TITL STRUCTURAL BASIS FOR Z-DNA BINDING AND STABILIZATION BY THE JRNL TITL 2 ZEBRAFISH Z-DNA DEPENDENT PROTEIN KINASE PKZ. JRNL REF NUCLEIC ACIDS RES. V. 41 9924 2013 JRNL REFN ISSN 0305-1048 JRNL PMID 23975196 JRNL DOI 10.1093/NAR/GKT743 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 28.07 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 95.0 REMARK 3 NUMBER OF REFLECTIONS : 12155 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.184 REMARK 3 R VALUE (WORKING SET) : 0.181 REMARK 3 FREE R VALUE : 0.212 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 10.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1216 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 28.0754 - 3.7416 0.90 1245 138 0.1667 0.1939 REMARK 3 2 3.7416 - 2.9709 0.96 1244 139 0.1662 0.2000 REMARK 3 3 2.9709 - 2.5956 0.97 1241 138 0.1948 0.2175 REMARK 3 4 2.5956 - 2.3584 0.97 1231 136 0.1893 0.2229 REMARK 3 5 2.3584 - 2.1895 0.96 1211 135 0.1793 0.2112 REMARK 3 6 2.1895 - 2.0604 0.96 1213 135 0.1877 0.2300 REMARK 3 7 2.0604 - 1.9573 0.95 1178 131 0.2019 0.2436 REMARK 3 8 1.9573 - 1.8721 0.95 1188 133 0.2237 0.2510 REMARK 3 9 1.8721 - 1.8000 0.95 1188 131 0.2328 0.2574 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.170 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.000 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 27.10 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.019 684 REMARK 3 ANGLE : 2.062 944 REMARK 3 CHIRALITY : 0.138 105 REMARK 3 PLANARITY : 0.009 100 REMARK 3 DIHEDRAL : 19.133 274 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 5 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 7 THROUGH 21 ) REMARK 3 ORIGIN FOR THE GROUP (A): -4.6410 27.9134 20.4601 REMARK 3 T TENSOR REMARK 3 T11: 0.1615 T22: 0.5634 REMARK 3 T33: 0.3920 T12: 0.0215 REMARK 3 T13: -0.0458 T23: 0.0690 REMARK 3 L TENSOR REMARK 3 L11: 2.6131 L22: 5.9651 REMARK 3 L33: 2.0744 L12: 1.8549 REMARK 3 L13: -0.3418 L23: -0.0347 REMARK 3 S TENSOR REMARK 3 S11: -0.0160 S12: 0.2205 S13: -0.1579 REMARK 3 S21: -0.3529 S22: -0.3420 S23: -0.5563 REMARK 3 S31: 0.1730 S32: 1.0005 S33: 0.2932 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 22 THROUGH 36 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.0537 28.1087 14.8579 REMARK 3 T TENSOR REMARK 3 T11: 0.1870 T22: 0.4917 REMARK 3 T33: 0.2409 T12: -0.0467 REMARK 3 T13: -0.0318 T23: 0.0455 REMARK 3 L TENSOR REMARK 3 L11: 6.1764 L22: 7.4409 REMARK 3 L33: 5.3858 L12: 2.5436 REMARK 3 L13: 0.4755 L23: -0.1937 REMARK 3 S TENSOR REMARK 3 S11: -0.6224 S12: 1.7057 S13: 0.4543 REMARK 3 S21: -0.7020 S22: 0.8746 S23: -0.2335 REMARK 3 S31: -0.0756 S32: 0.5530 S33: -0.1489 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 37 THROUGH 49 ) REMARK 3 ORIGIN FOR THE GROUP (A): -15.1365 28.8271 25.6203 REMARK 3 T TENSOR REMARK 3 T11: 0.1332 T22: 0.2462 REMARK 3 T33: 0.1799 T12: -0.0046 REMARK 3 T13: 0.0120 T23: 0.0267 REMARK 3 L TENSOR REMARK 3 L11: 9.7803 L22: 9.1128 REMARK 3 L33: 2.8301 L12: 0.8630 REMARK 3 L13: 2.2742 L23: 4.6871 REMARK 3 S TENSOR REMARK 3 S11: 0.1051 S12: -0.5851 S13: 0.3494 REMARK 3 S21: 0.3995 S22: 0.0212 S23: -0.2850 REMARK 3 S31: 0.0687 S32: 0.0973 S33: -0.0938 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 50 THROUGH 56 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.6694 38.2505 26.6675 REMARK 3 T TENSOR REMARK 3 T11: 0.2292 T22: 0.4531 REMARK 3 T33: 0.8008 T12: -0.0585 REMARK 3 T13: -0.0125 T23: -0.1431 REMARK 3 L TENSOR REMARK 3 L11: 9.0410 L22: 6.0914 REMARK 3 L33: 5.7413 L12: -6.1577 REMARK 3 L13: 2.0030 L23: -1.5014 REMARK 3 S TENSOR REMARK 3 S11: -0.0751 S12: -0.7726 S13: 1.5113 REMARK 3 S21: -0.0479 S22: 0.6892 S23: 0.3140 REMARK 3 S31: -0.3547 S32: 0.6560 S33: -0.4742 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 57 THROUGH 69 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.2159 39.6957 19.5571 REMARK 3 T TENSOR REMARK 3 T11: 0.2992 T22: 0.2587 REMARK 3 T33: 0.8813 T12: -0.0648 REMARK 3 T13: -0.0773 T23: 0.0761 REMARK 3 L TENSOR REMARK 3 L11: 1.8823 L22: 0.4033 REMARK 3 L33: 6.6748 L12: 0.5101 REMARK 3 L13: -0.9253 L23: 0.9697 REMARK 3 S TENSOR REMARK 3 S11: -0.4020 S12: 0.0861 S13: 1.9318 REMARK 3 S21: -0.2186 S22: -0.1638 S23: 0.3378 REMARK 3 S31: -1.1181 S32: -0.0405 S33: 0.5734 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LB6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 25-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080410. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 29-SEP-12 REMARK 200 TEMPERATURE (KELVIN) : 70 REMARK 200 PH : 5.4 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID23-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : PILATUS 6M-F REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM REMARK 200 DATA SCALING SOFTWARE : SCALA REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 12161 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 32.550 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 96.4 REMARK 200 DATA REDUNDANCY : 4.600 REMARK 200 R MERGE (I) : 0.07400 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.90 REMARK 200 COMPLETENESS FOR SHELL (%) : 96.0 REMARK 200 DATA REDUNDANCY IN SHELL : 4.70 REMARK 200 R MERGE FOR SHELL (I) : 0.67900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4LB5 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 53.94 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.67 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2.0 M AMMONIUM SULFATE, 0.1 M SODIUM REMARK 280 ACETATE, 7.5 % GLYCEROL, PH 5.4, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 4 2 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z REMARK 290 3555 -Y,X,Z REMARK 290 4555 Y,-X,Z REMARK 290 5555 -X,Y,-Z REMARK 290 6555 X,-Y,-Z REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z REMARK 290 9555 X+1/2,Y+1/2,Z+1/2 REMARK 290 10555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 11555 -Y+1/2,X+1/2,Z+1/2 REMARK 290 12555 Y+1/2,-X+1/2,Z+1/2 REMARK 290 13555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 14555 X+1/2,-Y+1/2,-Z+1/2 REMARK 290 15555 Y+1/2,X+1/2,-Z+1/2 REMARK 290 16555 -Y+1/2,-X+1/2,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 9 1.000000 0.000000 0.000000 55.45500 REMARK 290 SMTRY2 9 0.000000 1.000000 0.000000 55.45500 REMARK 290 SMTRY3 9 0.000000 0.000000 1.000000 21.57000 REMARK 290 SMTRY1 10 -1.000000 0.000000 0.000000 55.45500 REMARK 290 SMTRY2 10 0.000000 -1.000000 0.000000 55.45500 REMARK 290 SMTRY3 10 0.000000 0.000000 1.000000 21.57000 REMARK 290 SMTRY1 11 0.000000 -1.000000 0.000000 55.45500 REMARK 290 SMTRY2 11 1.000000 0.000000 0.000000 55.45500 REMARK 290 SMTRY3 11 0.000000 0.000000 1.000000 21.57000 REMARK 290 SMTRY1 12 0.000000 1.000000 0.000000 55.45500 REMARK 290 SMTRY2 12 -1.000000 0.000000 0.000000 55.45500 REMARK 290 SMTRY3 12 0.000000 0.000000 1.000000 21.57000 REMARK 290 SMTRY1 13 -1.000000 0.000000 0.000000 55.45500 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 55.45500 REMARK 290 SMTRY3 13 0.000000 0.000000 -1.000000 21.57000 REMARK 290 SMTRY1 14 1.000000 0.000000 0.000000 55.45500 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 55.45500 REMARK 290 SMTRY3 14 0.000000 0.000000 -1.000000 21.57000 REMARK 290 SMTRY1 15 0.000000 1.000000 0.000000 55.45500 REMARK 290 SMTRY2 15 1.000000 0.000000 0.000000 55.45500 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 21.57000 REMARK 290 SMTRY1 16 0.000000 -1.000000 0.000000 55.45500 REMARK 290 SMTRY2 16 -1.000000 0.000000 0.000000 55.45500 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 21.57000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: OCTAMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 -1.000000 0.000000 0.00000 REMARK 350 BIOMT2 2 -1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 43.14000 REMARK 350 BIOMT1 3 -1.000000 0.000000 0.000000 -55.45500 REMARK 350 BIOMT2 3 0.000000 -1.000000 0.000000 55.45500 REMARK 350 BIOMT3 3 0.000000 0.000000 1.000000 -21.57000 REMARK 350 BIOMT1 4 0.000000 1.000000 0.000000 -55.45500 REMARK 350 BIOMT2 4 1.000000 0.000000 0.000000 55.45500 REMARK 350 BIOMT3 4 0.000000 0.000000 -1.000000 21.57000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH B 117 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 108 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 119 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 120 LIES ON A SPECIAL POSITION. REMARK 375 HOH C 121 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY B -1 REMARK 465 SER B 0 REMARK 465 HIS B 1 REMARK 465 MET B 2 REMARK 465 ALA B 3 REMARK 465 SER B 4 REMARK 465 SER B 5 REMARK 465 ALA B 6 REMARK 465 SER B 70 REMARK 465 DT C 7 REMARK 465 DC C 14 REMARK 465 DG C 15 REMARK 465 DC C 16 REMARK 465 DG C 17 REMARK 465 DC C 18 REMARK 465 DG C 19 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OP1 DG C 9 O HOH C 112 2.07 REMARK 500 OD2 ASP B 16 NH1 ARG B 20 2.11 REMARK 500 O HOH B 126 O HOH B 133 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH B 104 O HOH B 141 15455 1.80 REMARK 500 O HOH C 124 O HOH C 131 8556 1.85 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND LENGTHS REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,2(A3,1X,A1,I4,A1,1X,A4,3X),1X,F6.3) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 RES CSSEQI ATM2 DEVIATION REMARK 500 DC C 12 C5' DC C 12 C4' 0.049 REMARK 500 DG C 13 O4' DG C 13 C4' -0.062 REMARK 500 DG C 13 O3' DG C 13 C3' -0.064 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 DC C 8 C6 - N1 - C2 ANGL. DEV. = 3.0 DEGREES REMARK 500 DC C 8 N3 - C4 - C5 ANGL. DEV. = 2.5 DEGREES REMARK 500 DG C 9 O5' - P - OP1 ANGL. DEV. = -7.5 DEGREES REMARK 500 DG C 9 O4' - C4' - C3' ANGL. DEV. = 3.9 DEGREES REMARK 500 DG C 9 C6 - N1 - C2 ANGL. DEV. = -4.6 DEGREES REMARK 500 DG C 13 OP1 - P - OP2 ANGL. DEV. = 9.6 DEGREES REMARK 500 DG C 13 O4' - C4' - C3' ANGL. DEV. = -5.5 DEGREES REMARK 500 DG C 13 C5' - C4' - C3' ANGL. DEV. = -11.4 DEGREES REMARK 500 DG C 13 C4' - C3' - O3' ANGL. DEV. = -17.0 DEGREES REMARK 500 DG C 13 O4' - C1' - N9 ANGL. DEV. = -6.1 DEGREES REMARK 500 DG C 13 C6 - N1 - C2 ANGL. DEV. = -3.8 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP B 59 -130.94 49.01 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LB5 RELATED DB: PDB DBREF 4LB6 B 5 70 UNP Q5NE14 Q5NE14_DANRE 5 70 DBREF 4LB6 C 7 19 PDB 4LB6 4LB6 7 19 SEQADV 4LB6 GLY B -1 UNP Q5NE14 EXPRESSION TAG SEQADV 4LB6 SER B 0 UNP Q5NE14 EXPRESSION TAG SEQADV 4LB6 HIS B 1 UNP Q5NE14 EXPRESSION TAG SEQADV 4LB6 MET B 2 UNP Q5NE14 EXPRESSION TAG SEQADV 4LB6 ALA B 3 UNP Q5NE14 EXPRESSION TAG SEQADV 4LB6 SER B 4 UNP Q5NE14 EXPRESSION TAG SEQRES 1 B 72 GLY SER HIS MET ALA SER SER ALA GLU ASN GLU ILE GLU SEQRES 2 B 72 MET ARG ILE CYS ASP TYR LEU ARG ARG HIS GLY ARG SER SEQRES 3 B 72 THR VAL GLN ASP ILE PHE LYS GLU LEU LYS LEU GLU LYS SEQRES 4 B 72 SER THR VAL ASN ARG HIS LEU TYR SER LEU GLN ALA SER SEQRES 5 B 72 LYS GLN VAL PHE LYS THR VAL GLU ASP ASN LYS ARG PRO SEQRES 6 B 72 VAL TRP ASN LEU VAL GLU SER SEQRES 1 C 13 DT DC DG DC DG DC DG DC DG DC DG DC DG FORMUL 3 HOH *73(H2 O) HELIX 1 1 GLU B 7 GLY B 22 1 16 HELIX 2 2 THR B 25 LYS B 34 1 10 HELIX 3 3 GLU B 36 SER B 50 1 15 SHEET 1 A 2 VAL B 53 THR B 56 0 SHEET 2 A 2 VAL B 64 LEU B 67 -1 O ASN B 66 N PHE B 54 CRYST1 110.910 110.910 43.140 90.00 90.00 90.00 I 4 2 2 16 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.009016 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009016 0.000000 0.00000 SCALE3 0.000000 0.000000 0.023180 0.00000