data_4LBD # _entry.id 4LBD # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.375 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code _database_2.pdbx_database_accession _database_2.pdbx_DOI PDB 4LBD pdb_00004lbd 10.2210/pdb4lbd/pdb WWPDB D_1000179355 ? ? # _pdbx_database_related.db_name TargetDB _pdbx_database_related.db_id IGBMC-0078-000 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LBD _pdbx_database_status.recvd_initial_deposition_date 1998-02-04 _pdbx_database_status.deposit_site ? _pdbx_database_status.process_site BNL _pdbx_database_status.SG_entry Y _pdbx_database_status.pdb_format_compatible Y _pdbx_database_status.status_code_mr ? _pdbx_database_status.status_code_sf ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.status_code_nmr_data ? _pdbx_database_status.methods_development_category ? # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Klaholz, B.P.' 1 'Renaud, J.-P.' 2 'Mitschler, A.' 3 'Moras, D.' 4 'Structural Proteomics in Europe (SPINE)' 5 # loop_ _citation.id _citation.title _citation.journal_abbrev _citation.journal_volume _citation.page_first _citation.page_last _citation.year _citation.journal_id_ASTM _citation.country _citation.journal_id_ISSN _citation.journal_id_CSD _citation.book_publisher _citation.pdbx_database_id_PubMed _citation.pdbx_database_id_DOI primary 'Conformational adaptation of agonists to the human nuclear receptor RAR gamma.' Nat.Struct.Biol. 5 199 202 1998 NSBIEW US 1072-8368 2024 ? 9501913 10.1038/nsb0398-199 1 'Crystal Structure of the Rar-Gamma Ligand-Binding Domain Bound to All-Trans Retinoic Acid' Nature 378 681 ? 1995 NATUAS UK 0028-0836 0006 ? ? ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal _citation_author.identifier_ORCID primary 'Klaholz, B.P.' 1 ? primary 'Renaud, J.P.' 2 ? primary 'Mitschler, A.' 3 ? primary 'Zusi, C.' 4 ? primary 'Chambon, P.' 5 ? primary 'Gronemeyer, H.' 6 ? primary 'Moras, D.' 7 ? 1 'Renaud, J.P.' 8 ? 1 'Rochel, N.' 9 ? 1 'Ruff, M.' 10 ? 1 'Vivat, V.' 11 ? 1 'Chambon, P.' 12 ? 1 'Gronemeyer, H.' 13 ? 1 'Moras, D.' 14 ? # _cell.entry_id 4LBD _cell.length_a 59.882 _cell.length_b 59.882 _cell.length_c 155.958 _cell.angle_alpha 90.00 _cell.angle_beta 90.00 _cell.angle_gamma 90.00 _cell.Z_PDB 8 _cell.pdbx_unique_axis ? # _symmetry.entry_id 4LBD _symmetry.space_group_name_H-M 'P 41 21 2' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 92 # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'RETINOIC ACID RECEPTOR GAMMA' 30193.055 1 ? ? 'LBD, LIGAND-BINDING DOMAIN, RESIDUES 178 - 423' ? 2 non-polymer syn '3-FLUORO-4-[2-HYDROXY-2-(5,5,8,8-TETRAMETHYL-5,6,7,8,-TETRAHYDRO-NAPHTALEN-2-YL)-ACETYLAMINO]-BENZOIC ACID' 399.455 1 ? ? ? ? 3 water nat water 18.015 111 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name 'E DOMAIN' # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;MGSSHHHHHHSSGLVPRGSHMDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATK CIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAG QLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAER AITLKMEIPGPMPPLIREMLENPEMFE ; _entity_poly.pdbx_seq_one_letter_code_can ;MGSSHHHHHHSSGLVPRGSHMDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATK CIIKIVEFAKRLPGFTGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAG QLLPLEMDDTETGLLSAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAER AITLKMEIPGPMPPLIREMLENPEMFE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier IGBMC-0078-000 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MET n 1 2 GLY n 1 3 SER n 1 4 SER n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 HIS n 1 9 HIS n 1 10 HIS n 1 11 SER n 1 12 SER n 1 13 GLY n 1 14 LEU n 1 15 VAL n 1 16 PRO n 1 17 ARG n 1 18 GLY n 1 19 SER n 1 20 HIS n 1 21 MET n 1 22 ASP n 1 23 SER n 1 24 TYR n 1 25 GLU n 1 26 LEU n 1 27 SER n 1 28 PRO n 1 29 GLN n 1 30 LEU n 1 31 GLU n 1 32 GLU n 1 33 LEU n 1 34 ILE n 1 35 THR n 1 36 LYS n 1 37 VAL n 1 38 SER n 1 39 LYS n 1 40 ALA n 1 41 HIS n 1 42 GLN n 1 43 GLU n 1 44 THR n 1 45 PHE n 1 46 PRO n 1 47 SER n 1 48 LEU n 1 49 CYS n 1 50 GLN n 1 51 LEU n 1 52 GLY n 1 53 LYS n 1 54 TYR n 1 55 THR n 1 56 THR n 1 57 ASN n 1 58 SER n 1 59 SER n 1 60 ALA n 1 61 ASP n 1 62 HIS n 1 63 ARG n 1 64 VAL n 1 65 GLN n 1 66 LEU n 1 67 ASP n 1 68 LEU n 1 69 GLY n 1 70 LEU n 1 71 TRP n 1 72 ASP n 1 73 LYS n 1 74 PHE n 1 75 SER n 1 76 GLU n 1 77 LEU n 1 78 ALA n 1 79 THR n 1 80 LYS n 1 81 CYS n 1 82 ILE n 1 83 ILE n 1 84 LYS n 1 85 ILE n 1 86 VAL n 1 87 GLU n 1 88 PHE n 1 89 ALA n 1 90 LYS n 1 91 ARG n 1 92 LEU n 1 93 PRO n 1 94 GLY n 1 95 PHE n 1 96 THR n 1 97 GLY n 1 98 LEU n 1 99 SER n 1 100 ILE n 1 101 ALA n 1 102 ASP n 1 103 GLN n 1 104 ILE n 1 105 THR n 1 106 LEU n 1 107 LEU n 1 108 LYS n 1 109 ALA n 1 110 ALA n 1 111 CYS n 1 112 LEU n 1 113 ASP n 1 114 ILE n 1 115 LEU n 1 116 MET n 1 117 LEU n 1 118 ARG n 1 119 ILE n 1 120 CYS n 1 121 THR n 1 122 ARG n 1 123 TYR n 1 124 THR n 1 125 PRO n 1 126 GLU n 1 127 GLN n 1 128 ASP n 1 129 THR n 1 130 MET n 1 131 THR n 1 132 PHE n 1 133 SER n 1 134 ASP n 1 135 GLY n 1 136 LEU n 1 137 THR n 1 138 LEU n 1 139 ASN n 1 140 ARG n 1 141 THR n 1 142 GLN n 1 143 MET n 1 144 HIS n 1 145 ASN n 1 146 ALA n 1 147 GLY n 1 148 PHE n 1 149 GLY n 1 150 PRO n 1 151 LEU n 1 152 THR n 1 153 ASP n 1 154 LEU n 1 155 VAL n 1 156 PHE n 1 157 ALA n 1 158 PHE n 1 159 ALA n 1 160 GLY n 1 161 GLN n 1 162 LEU n 1 163 LEU n 1 164 PRO n 1 165 LEU n 1 166 GLU n 1 167 MET n 1 168 ASP n 1 169 ASP n 1 170 THR n 1 171 GLU n 1 172 THR n 1 173 GLY n 1 174 LEU n 1 175 LEU n 1 176 SER n 1 177 ALA n 1 178 ILE n 1 179 CYS n 1 180 LEU n 1 181 ILE n 1 182 CYS n 1 183 GLY n 1 184 ASP n 1 185 ARG n 1 186 MET n 1 187 ASP n 1 188 LEU n 1 189 GLU n 1 190 GLU n 1 191 PRO n 1 192 GLU n 1 193 LYS n 1 194 VAL n 1 195 ASP n 1 196 LYS n 1 197 LEU n 1 198 GLN n 1 199 GLU n 1 200 PRO n 1 201 LEU n 1 202 LEU n 1 203 GLU n 1 204 ALA n 1 205 LEU n 1 206 ARG n 1 207 LEU n 1 208 TYR n 1 209 ALA n 1 210 ARG n 1 211 ARG n 1 212 ARG n 1 213 ARG n 1 214 PRO n 1 215 SER n 1 216 GLN n 1 217 PRO n 1 218 TYR n 1 219 MET n 1 220 PHE n 1 221 PRO n 1 222 ARG n 1 223 MET n 1 224 LEU n 1 225 MET n 1 226 LYS n 1 227 ILE n 1 228 THR n 1 229 ASP n 1 230 LEU n 1 231 ARG n 1 232 GLY n 1 233 ILE n 1 234 SER n 1 235 THR n 1 236 LYS n 1 237 GLY n 1 238 ALA n 1 239 GLU n 1 240 ARG n 1 241 ALA n 1 242 ILE n 1 243 THR n 1 244 LEU n 1 245 LYS n 1 246 MET n 1 247 GLU n 1 248 ILE n 1 249 PRO n 1 250 GLY n 1 251 PRO n 1 252 MET n 1 253 PRO n 1 254 PRO n 1 255 LEU n 1 256 ILE n 1 257 ARG n 1 258 GLU n 1 259 MET n 1 260 LEU n 1 261 GLU n 1 262 ASN n 1 263 PRO n 1 264 GLU n 1 265 MET n 1 266 PHE n 1 267 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name human _entity_src_gen.gene_src_genus Homo _entity_src_gen.pdbx_gene_src_gene HRARGAMMA _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Homo sapiens' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 9606 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line BL21 _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location CYTOPLASM _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli BL21(DE3)' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus Escherichia _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species 'Escherichia coli' _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21 (DE3)' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name PET-15B _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code RARG2_HUMAN _struct_ref.entity_id 1 _struct_ref.pdbx_db_accession P22932 _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_seq_one_letter_code ;MYDCMETFAPGPRRLYGAAGPGAGLLRRATGGSCFAGLESFAWPQPASLQSVETQSTSSEEMVPSSPSPPPPPRVYKPCF VCNDKSSGYHYGVSSCEGCKGFFRRSIQKNMVYTCHRDKNCIINKVTRNRCQYCRLQKCFEVGMSKEAVRNDRNKKKKEV KEEGSPDSYELSPQLEELITKVSKAHQETFPSLCQLGKYTTNSSADHRVQLDLGLWDKFSELATKCIIKIVEFAKRLPGF TGLSIADQITLLKAACLDILMLRICTRYTPEQDTMTFSDGLTLNRTQMHNAGFGPLTDLVFAFAGQLLPLEMDDTETGLL SAICLICGDRMDLEEPEKVDKLQEPLLEALRLYARRRRPSQPYMFPRMLMKITDLRGISTKGAERAITLKMEIPGPMPPL IREMLENPEMFEDDSSQPGPHPNASSEDEVPGGQGKGGLKSPA ; _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LBD _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 22 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 267 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession P22932 _struct_ref_seq.db_align_beg 167 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 412 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 178 _struct_ref_seq.pdbx_auth_seq_align_end 423 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight 961 non-polymer . '3-FLUORO-4-[2-HYDROXY-2-(5,5,8,8-TETRAMETHYL-5,6,7,8,-TETRAHYDRO-NAPHTALEN-2-YL)-ACETYLAMINO]-BENZOIC ACID' BMS961 'C23 H26 F N O4' 399.455 ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TRP 'L-peptide linking' y TRYPTOPHAN ? 'C11 H12 N2 O2' 204.225 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4LBD _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.36 _exptl_crystal.density_percent_sol 33. _exptl_crystal.description ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method ? _exptl_crystal_grow.temp ? _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 7.0 _exptl_crystal_grow.pdbx_pH_range ? _exptl_crystal_grow.pdbx_details 'pH 7.0' # _diffrn.id 1 _diffrn.ambient_temp 123 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector 'IMAGE PLATE' _diffrn_detector.type MARRESEARCH _diffrn_detector.pdbx_collection_date 1996-05 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.975 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'LURE BEAMLINE DW32' _diffrn_source.pdbx_synchrotron_site LURE _diffrn_source.pdbx_synchrotron_beamline DW32 _diffrn_source.pdbx_wavelength 0.975 _diffrn_source.pdbx_wavelength_list ? # _reflns.entry_id 4LBD _reflns.observed_criterion_sigma_I ? _reflns.observed_criterion_sigma_F ? _reflns.d_resolution_low 14.97 _reflns.d_resolution_high 2.5 _reflns.number_obs 9894 _reflns.number_all ? _reflns.percent_possible_obs 95.36 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value 0.0960000 _reflns.pdbx_netI_over_sigmaI 15.28 _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy 2.98 _reflns.pdbx_diffrn_id 1 _reflns.pdbx_ordinal 1 # _reflns_shell.d_res_high 2.50 _reflns_shell.d_res_low 2.60 _reflns_shell.percent_possible_all 97.3 _reflns_shell.Rmerge_I_obs ? _reflns_shell.pdbx_Rsym_value 0.3200000 _reflns_shell.meanI_over_sigI_obs 4.67 _reflns_shell.pdbx_redundancy 3.0 _reflns_shell.pdbx_diffrn_id ? _reflns_shell.pdbx_ordinal 1 # _refine.entry_id 4LBD _refine.ls_number_reflns_obs 7511 _refine.ls_number_reflns_all ? _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 3.0 _refine.pdbx_data_cutoff_high_absF 1000000 _refine.pdbx_data_cutoff_low_absF 0.001 _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 5.0 _refine.ls_d_res_high 2.5 _refine.ls_percent_reflns_obs 76. _refine.ls_R_factor_obs 0.1830000 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1830000 _refine.ls_R_factor_R_free 0.2850000 _refine.ls_R_factor_R_free_error 0.01 _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.0 _refine.ls_number_reflns_R_free 1 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.B_iso_mean 37.8 _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details ? _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.details ? _refine.pdbx_starting_model 2LBD _refine.pdbx_method_to_determine_struct 'MOLECULAR REPLACEMENT' _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ? _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details 'RANDOM (FREERFLAG, CCP4)' _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML ? _refine.overall_SU_B ? _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_diffrn_id 1 _refine.pdbx_TLS_residual_ADP_flag ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.pdbx_solvent_vdw_probe_radii ? _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii ? _refine.pdbx_overall_phase_error ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1870 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 22 _refine_hist.number_atoms_solvent 158 _refine_hist.number_atoms_total 2050 _refine_hist.d_res_high 2.5 _refine_hist.d_res_low 5.0 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_refine_id _refine_ls_restr.pdbx_restraint_function x_bond_d 0.011 ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_bond_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg 1.61 ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_angle_deg_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d 21.7 ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_dihedral_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d 1.63 ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_na ? ? ? ? 'X-RAY DIFFRACTION' ? x_improper_angle_d_prot ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_mcangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scbond_it ? ? ? ? 'X-RAY DIFFRACTION' ? x_scangle_it ? ? ? ? 'X-RAY DIFFRACTION' ? # loop_ _pdbx_xplor_file.serial_no _pdbx_xplor_file.param_file _pdbx_xplor_file.topol_file _pdbx_xplor_file.pdbx_refine_id 1 PARHCSDX.PRO TOPHCSDX.PRO 'X-RAY DIFFRACTION' 2 PARAM19.SOL TOPH19.PEP 'X-RAY DIFFRACTION' 3 961.PAR TOPH19.SOL 'X-RAY DIFFRACTION' 4 ? 961.TOP 'X-RAY DIFFRACTION' # _struct.entry_id 4LBD _struct.title 'LIGAND-BINDING DOMAIN OF THE HUMAN RETINOIC ACID RECEPTOR GAMMA BOUND TO THE SYNTHETIC AGONIST BMS961' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LBD _struct_keywords.pdbx_keywords 'NUCLEAR RECEPTOR' _struct_keywords.text ;NUCLEAR RECEPTOR, RETINOIC ACID RECEPTOR, ALL-TRANS RETINOIC ACID, LIGAND-BINDING DOMAIN, COMPLEX, HOLO FORM, TRANSCRIPTION REGULATION, LIGAND-DEPENDENT, ACTIVE CONFORMATION, Structural Proteomics in Europe, SPINE, Structural Genomics ; # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? # _struct_biol.id 1 # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 H1 SER A 27 ? THR A 44 ? SER A 183 THR A 200 1 ? 18 HELX_P HELX_P2 H3 LEU A 68 ? ARG A 91 ? LEU A 224 ARG A 247 1 'SEE REMARK 650' 24 HELX_P HELX_P3 H4 ILE A 100 ? ALA A 109 ? ILE A 256 ALA A 265 1 ? 10 HELX_P HELX_P4 H5 ALA A 110 ? ARG A 122 ? ALA A 266 ARG A 278 1 ? 13 HELX_P HELX_P5 H6 ARG A 140 ? ASN A 145 ? ARG A 296 ASN A 301 1 ? 6 HELX_P HELX_P6 H7 GLY A 149 ? LEU A 165 ? GLY A 305 LEU A 321 1 'SEE REMARK 650' 17 HELX_P HELX_P7 H8 ASP A 169 ? LEU A 180 ? ASP A 325 LEU A 336 1 ? 12 HELX_P HELX_P8 H9 PRO A 191 ? ARG A 212 ? PRO A 347 ARG A 368 1 ? 22 HELX_P HELX_P9 H10 MET A 219 ? LYS A 236 ? MET A 375 LYS A 392 1 ? 18 HELX_P HELX_P10 H11 GLY A 237 ? GLU A 247 ? GLY A 393 GLU A 403 1 ? 11 HELX_P HELX_P11 H12 PRO A 254 ? MET A 259 ? PRO A 410 MET A 415 1 ? 6 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 2 _struct_sheet.details ? # _struct_sheet_order.sheet_id A _struct_sheet_order.range_id_1 1 _struct_sheet_order.range_id_2 2 _struct_sheet_order.offset ? _struct_sheet_order.sense anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 THR A 129 ? THR A 131 ? THR A 285 THR A 287 A 2 THR A 137 ? ASN A 139 ? THR A 293 ASN A 295 # _pdbx_struct_sheet_hbond.sheet_id A _pdbx_struct_sheet_hbond.range_id_1 1 _pdbx_struct_sheet_hbond.range_id_2 2 _pdbx_struct_sheet_hbond.range_1_label_atom_id O _pdbx_struct_sheet_hbond.range_1_label_comp_id MET _pdbx_struct_sheet_hbond.range_1_label_asym_id A _pdbx_struct_sheet_hbond.range_1_label_seq_id 130 _pdbx_struct_sheet_hbond.range_1_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_1_auth_atom_id O _pdbx_struct_sheet_hbond.range_1_auth_comp_id MET _pdbx_struct_sheet_hbond.range_1_auth_asym_id A _pdbx_struct_sheet_hbond.range_1_auth_seq_id 286 _pdbx_struct_sheet_hbond.range_2_label_atom_id N _pdbx_struct_sheet_hbond.range_2_label_comp_id LEU _pdbx_struct_sheet_hbond.range_2_label_asym_id A _pdbx_struct_sheet_hbond.range_2_label_seq_id 138 _pdbx_struct_sheet_hbond.range_2_PDB_ins_code ? _pdbx_struct_sheet_hbond.range_2_auth_atom_id N _pdbx_struct_sheet_hbond.range_2_auth_comp_id LEU _pdbx_struct_sheet_hbond.range_2_auth_asym_id A _pdbx_struct_sheet_hbond.range_2_auth_seq_id 294 # _struct_site.id AC1 _struct_site.pdbx_evidence_code Software _struct_site.pdbx_auth_asym_id A _struct_site.pdbx_auth_comp_id 961 _struct_site.pdbx_auth_seq_id 1 _struct_site.pdbx_auth_ins_code ? _struct_site.pdbx_num_residues 14 _struct_site.details 'BINDING SITE FOR RESIDUE 961 A 1' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 14 PHE A 74 ? PHE A 230 . ? 1_555 ? 2 AC1 14 ALA A 78 ? ALA A 234 . ? 1_555 ? 3 AC1 14 CYS A 81 ? CYS A 237 . ? 1_555 ? 4 AC1 14 LEU A 115 ? LEU A 271 . ? 1_555 ? 5 AC1 14 MET A 116 ? MET A 272 . ? 1_555 ? 6 AC1 14 ILE A 119 ? ILE A 275 . ? 1_555 ? 7 AC1 14 ARG A 122 ? ARG A 278 . ? 1_555 ? 8 AC1 14 PHE A 132 ? PHE A 288 . ? 1_555 ? 9 AC1 14 SER A 133 ? SER A 289 . ? 1_555 ? 10 AC1 14 PHE A 148 ? PHE A 304 . ? 1_555 ? 11 AC1 14 GLY A 237 ? GLY A 393 . ? 1_555 ? 12 AC1 14 LEU A 244 ? LEU A 400 . ? 1_555 ? 13 AC1 14 ILE A 256 ? ILE A 412 . ? 1_555 ? 14 AC1 14 HOH C . ? HOH A 562 . ? 1_555 ? # _database_PDB_matrix.entry_id 4LBD _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4LBD _atom_sites.fract_transf_matrix[1][1] 0.016700 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.016700 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.006412 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C F N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MET 1 157 ? ? ? A . n A 1 2 GLY 2 158 ? ? ? A . n A 1 3 SER 3 159 ? ? ? A . n A 1 4 SER 4 160 ? ? ? A . n A 1 5 HIS 5 161 ? ? ? A . n A 1 6 HIS 6 162 ? ? ? A . n A 1 7 HIS 7 163 ? ? ? A . n A 1 8 HIS 8 164 ? ? ? A . n A 1 9 HIS 9 165 ? ? ? A . n A 1 10 HIS 10 166 ? ? ? A . n A 1 11 SER 11 167 ? ? ? A . n A 1 12 SER 12 168 ? ? ? A . n A 1 13 GLY 13 169 ? ? ? A . n A 1 14 LEU 14 170 ? ? ? A . n A 1 15 VAL 15 171 ? ? ? A . n A 1 16 PRO 16 172 ? ? ? A . n A 1 17 ARG 17 173 ? ? ? A . n A 1 18 GLY 18 174 ? ? ? A . n A 1 19 SER 19 175 ? ? ? A . n A 1 20 HIS 20 176 ? ? ? A . n A 1 21 MET 21 177 ? ? ? A . n A 1 22 ASP 22 178 ? ? ? A . n A 1 23 SER 23 179 ? ? ? A . n A 1 24 TYR 24 180 ? ? ? A . n A 1 25 GLU 25 181 ? ? ? A . n A 1 26 LEU 26 182 182 LEU LEU A . n A 1 27 SER 27 183 183 SER SER A . n A 1 28 PRO 28 184 184 PRO PRO A . n A 1 29 GLN 29 185 185 GLN GLN A . n A 1 30 LEU 30 186 186 LEU LEU A . n A 1 31 GLU 31 187 187 GLU GLU A . n A 1 32 GLU 32 188 188 GLU GLU A . n A 1 33 LEU 33 189 189 LEU LEU A . n A 1 34 ILE 34 190 190 ILE ILE A . n A 1 35 THR 35 191 191 THR THR A . n A 1 36 LYS 36 192 192 LYS LYS A . n A 1 37 VAL 37 193 193 VAL VAL A . n A 1 38 SER 38 194 194 SER SER A . n A 1 39 LYS 39 195 195 LYS LYS A . n A 1 40 ALA 40 196 196 ALA ALA A . n A 1 41 HIS 41 197 197 HIS HIS A . n A 1 42 GLN 42 198 198 GLN GLN A . n A 1 43 GLU 43 199 199 GLU GLU A . n A 1 44 THR 44 200 200 THR THR A . n A 1 45 PHE 45 201 201 PHE PHE A . n A 1 46 PRO 46 202 202 PRO PRO A . n A 1 47 SER 47 203 203 SER SER A . n A 1 48 LEU 48 204 204 LEU LEU A . n A 1 49 CYS 49 205 205 CYS CYS A . n A 1 50 GLN 50 206 206 GLN GLN A . n A 1 51 LEU 51 207 207 LEU LEU A . n A 1 52 GLY 52 208 208 GLY GLY A . n A 1 53 LYS 53 209 209 LYS LYS A . n A 1 54 TYR 54 210 210 TYR TYR A . n A 1 55 THR 55 211 211 THR THR A . n A 1 56 THR 56 212 212 THR THR A . n A 1 57 ASN 57 213 213 ASN ASN A . n A 1 58 SER 58 214 214 SER SER A . n A 1 59 SER 59 215 215 SER SER A . n A 1 60 ALA 60 216 216 ALA ALA A . n A 1 61 ASP 61 217 217 ASP ASP A . n A 1 62 HIS 62 218 218 HIS HIS A . n A 1 63 ARG 63 219 219 ARG ARG A . n A 1 64 VAL 64 220 220 VAL VAL A . n A 1 65 GLN 65 221 221 GLN GLN A . n A 1 66 LEU 66 222 222 LEU LEU A . n A 1 67 ASP 67 223 223 ASP ASP A . n A 1 68 LEU 68 224 224 LEU LEU A . n A 1 69 GLY 69 225 225 GLY GLY A . n A 1 70 LEU 70 226 226 LEU LEU A . n A 1 71 TRP 71 227 227 TRP TRP A . n A 1 72 ASP 72 228 228 ASP ASP A . n A 1 73 LYS 73 229 229 LYS LYS A . n A 1 74 PHE 74 230 230 PHE PHE A . n A 1 75 SER 75 231 231 SER SER A . n A 1 76 GLU 76 232 232 GLU GLU A . n A 1 77 LEU 77 233 233 LEU LEU A . n A 1 78 ALA 78 234 234 ALA ALA A . n A 1 79 THR 79 235 235 THR THR A . n A 1 80 LYS 80 236 236 LYS LYS A . n A 1 81 CYS 81 237 237 CYS CYS A . n A 1 82 ILE 82 238 238 ILE ILE A . n A 1 83 ILE 83 239 239 ILE ILE A . n A 1 84 LYS 84 240 240 LYS LYS A . n A 1 85 ILE 85 241 241 ILE ILE A . n A 1 86 VAL 86 242 242 VAL VAL A . n A 1 87 GLU 87 243 243 GLU GLU A . n A 1 88 PHE 88 244 244 PHE PHE A . n A 1 89 ALA 89 245 245 ALA ALA A . n A 1 90 LYS 90 246 246 LYS LYS A . n A 1 91 ARG 91 247 247 ARG ARG A . n A 1 92 LEU 92 248 248 LEU LEU A . n A 1 93 PRO 93 249 249 PRO PRO A . n A 1 94 GLY 94 250 250 GLY GLY A . n A 1 95 PHE 95 251 251 PHE PHE A . n A 1 96 THR 96 252 252 THR THR A . n A 1 97 GLY 97 253 253 GLY GLY A . n A 1 98 LEU 98 254 254 LEU LEU A . n A 1 99 SER 99 255 255 SER SER A . n A 1 100 ILE 100 256 256 ILE ILE A . n A 1 101 ALA 101 257 257 ALA ALA A . n A 1 102 ASP 102 258 258 ASP ASP A . n A 1 103 GLN 103 259 259 GLN GLN A . n A 1 104 ILE 104 260 260 ILE ILE A . n A 1 105 THR 105 261 261 THR THR A . n A 1 106 LEU 106 262 262 LEU LEU A . n A 1 107 LEU 107 263 263 LEU LEU A . n A 1 108 LYS 108 264 264 LYS LYS A . n A 1 109 ALA 109 265 265 ALA ALA A . n A 1 110 ALA 110 266 266 ALA ALA A . n A 1 111 CYS 111 267 267 CYS CYS A . n A 1 112 LEU 112 268 268 LEU LEU A . n A 1 113 ASP 113 269 269 ASP ASP A . n A 1 114 ILE 114 270 270 ILE ILE A . n A 1 115 LEU 115 271 271 LEU LEU A . n A 1 116 MET 116 272 272 MET MET A . n A 1 117 LEU 117 273 273 LEU LEU A . n A 1 118 ARG 118 274 274 ARG ARG A . n A 1 119 ILE 119 275 275 ILE ILE A . n A 1 120 CYS 120 276 276 CYS CYS A . n A 1 121 THR 121 277 277 THR THR A . n A 1 122 ARG 122 278 278 ARG ARG A . n A 1 123 TYR 123 279 279 TYR TYR A . n A 1 124 THR 124 280 280 THR THR A . n A 1 125 PRO 125 281 281 PRO PRO A . n A 1 126 GLU 126 282 282 GLU GLU A . n A 1 127 GLN 127 283 283 GLN GLN A . n A 1 128 ASP 128 284 284 ASP ASP A . n A 1 129 THR 129 285 285 THR THR A . n A 1 130 MET 130 286 286 MET MET A . n A 1 131 THR 131 287 287 THR THR A . n A 1 132 PHE 132 288 288 PHE PHE A . n A 1 133 SER 133 289 289 SER SER A . n A 1 134 ASP 134 290 290 ASP ASP A . n A 1 135 GLY 135 291 291 GLY GLY A . n A 1 136 LEU 136 292 292 LEU LEU A . n A 1 137 THR 137 293 293 THR THR A . n A 1 138 LEU 138 294 294 LEU LEU A . n A 1 139 ASN 139 295 295 ASN ASN A . n A 1 140 ARG 140 296 296 ARG ARG A . n A 1 141 THR 141 297 297 THR THR A . n A 1 142 GLN 142 298 298 GLN GLN A . n A 1 143 MET 143 299 299 MET MET A . n A 1 144 HIS 144 300 300 HIS HIS A . n A 1 145 ASN 145 301 301 ASN ASN A . n A 1 146 ALA 146 302 302 ALA ALA A . n A 1 147 GLY 147 303 303 GLY GLY A . n A 1 148 PHE 148 304 304 PHE PHE A . n A 1 149 GLY 149 305 305 GLY GLY A . n A 1 150 PRO 150 306 306 PRO PRO A . n A 1 151 LEU 151 307 307 LEU LEU A . n A 1 152 THR 152 308 308 THR THR A . n A 1 153 ASP 153 309 309 ASP ASP A . n A 1 154 LEU 154 310 310 LEU LEU A . n A 1 155 VAL 155 311 311 VAL VAL A . n A 1 156 PHE 156 312 312 PHE PHE A . n A 1 157 ALA 157 313 313 ALA ALA A . n A 1 158 PHE 158 314 314 PHE PHE A . n A 1 159 ALA 159 315 315 ALA ALA A . n A 1 160 GLY 160 316 316 GLY GLY A . n A 1 161 GLN 161 317 317 GLN GLN A . n A 1 162 LEU 162 318 318 LEU LEU A . n A 1 163 LEU 163 319 319 LEU LEU A . n A 1 164 PRO 164 320 320 PRO PRO A . n A 1 165 LEU 165 321 321 LEU LEU A . n A 1 166 GLU 166 322 322 GLU GLU A . n A 1 167 MET 167 323 323 MET MET A . n A 1 168 ASP 168 324 324 ASP ASP A . n A 1 169 ASP 169 325 325 ASP ASP A . n A 1 170 THR 170 326 326 THR THR A . n A 1 171 GLU 171 327 327 GLU GLU A . n A 1 172 THR 172 328 328 THR THR A . n A 1 173 GLY 173 329 329 GLY GLY A . n A 1 174 LEU 174 330 330 LEU LEU A . n A 1 175 LEU 175 331 331 LEU LEU A . n A 1 176 SER 176 332 332 SER SER A . n A 1 177 ALA 177 333 333 ALA ALA A . n A 1 178 ILE 178 334 334 ILE ILE A . n A 1 179 CYS 179 335 335 CYS CYS A . n A 1 180 LEU 180 336 336 LEU LEU A . n A 1 181 ILE 181 337 337 ILE ILE A . n A 1 182 CYS 182 338 338 CYS CYS A . n A 1 183 GLY 183 339 339 GLY GLY A . n A 1 184 ASP 184 340 340 ASP ASP A . n A 1 185 ARG 185 341 341 ARG ARG A . n A 1 186 MET 186 342 342 MET MET A . n A 1 187 ASP 187 343 343 ASP ASP A . n A 1 188 LEU 188 344 344 LEU LEU A . n A 1 189 GLU 189 345 345 GLU GLU A . n A 1 190 GLU 190 346 346 GLU GLU A . n A 1 191 PRO 191 347 347 PRO PRO A . n A 1 192 GLU 192 348 348 GLU GLU A . n A 1 193 LYS 193 349 349 LYS LYS A . n A 1 194 VAL 194 350 350 VAL VAL A . n A 1 195 ASP 195 351 351 ASP ASP A . n A 1 196 LYS 196 352 352 LYS LYS A . n A 1 197 LEU 197 353 353 LEU LEU A . n A 1 198 GLN 198 354 354 GLN GLN A . n A 1 199 GLU 199 355 355 GLU GLU A . n A 1 200 PRO 200 356 356 PRO PRO A . n A 1 201 LEU 201 357 357 LEU LEU A . n A 1 202 LEU 202 358 358 LEU LEU A . n A 1 203 GLU 203 359 359 GLU GLU A . n A 1 204 ALA 204 360 360 ALA ALA A . n A 1 205 LEU 205 361 361 LEU LEU A . n A 1 206 ARG 206 362 362 ARG ARG A . n A 1 207 LEU 207 363 363 LEU LEU A . n A 1 208 TYR 208 364 364 TYR TYR A . n A 1 209 ALA 209 365 365 ALA ALA A . n A 1 210 ARG 210 366 366 ARG ARG A . n A 1 211 ARG 211 367 367 ARG ARG A . n A 1 212 ARG 212 368 368 ARG ARG A . n A 1 213 ARG 213 369 369 ARG ARG A . n A 1 214 PRO 214 370 370 PRO PRO A . n A 1 215 SER 215 371 371 SER SER A . n A 1 216 GLN 216 372 372 GLN GLN A . n A 1 217 PRO 217 373 373 PRO PRO A . n A 1 218 TYR 218 374 374 TYR TYR A . n A 1 219 MET 219 375 375 MET MET A . n A 1 220 PHE 220 376 376 PHE PHE A . n A 1 221 PRO 221 377 377 PRO PRO A . n A 1 222 ARG 222 378 378 ARG ARG A . n A 1 223 MET 223 379 379 MET MET A . n A 1 224 LEU 224 380 380 LEU LEU A . n A 1 225 MET 225 381 381 MET MET A . n A 1 226 LYS 226 382 382 LYS LYS A . n A 1 227 ILE 227 383 383 ILE ILE A . n A 1 228 THR 228 384 384 THR THR A . n A 1 229 ASP 229 385 385 ASP ASP A . n A 1 230 LEU 230 386 386 LEU LEU A . n A 1 231 ARG 231 387 387 ARG ARG A . n A 1 232 GLY 232 388 388 GLY GLY A . n A 1 233 ILE 233 389 389 ILE ILE A . n A 1 234 SER 234 390 390 SER SER A . n A 1 235 THR 235 391 391 THR THR A . n A 1 236 LYS 236 392 392 LYS LYS A . n A 1 237 GLY 237 393 393 GLY GLY A . n A 1 238 ALA 238 394 394 ALA ALA A . n A 1 239 GLU 239 395 395 GLU GLU A . n A 1 240 ARG 240 396 396 ARG ARG A . n A 1 241 ALA 241 397 397 ALA ALA A . n A 1 242 ILE 242 398 398 ILE ILE A . n A 1 243 THR 243 399 399 THR THR A . n A 1 244 LEU 244 400 400 LEU LEU A . n A 1 245 LYS 245 401 401 LYS LYS A . n A 1 246 MET 246 402 402 MET MET A . n A 1 247 GLU 247 403 403 GLU GLU A . n A 1 248 ILE 248 404 404 ILE ILE A . n A 1 249 PRO 249 405 405 PRO PRO A . n A 1 250 GLY 250 406 406 GLY GLY A . n A 1 251 PRO 251 407 407 PRO PRO A . n A 1 252 MET 252 408 408 MET MET A . n A 1 253 PRO 253 409 409 PRO PRO A . n A 1 254 PRO 254 410 410 PRO PRO A . n A 1 255 LEU 255 411 411 LEU LEU A . n A 1 256 ILE 256 412 412 ILE ILE A . n A 1 257 ARG 257 413 413 ARG ARG A . n A 1 258 GLU 258 414 414 GLU GLU A . n A 1 259 MET 259 415 415 MET MET A . n A 1 260 LEU 260 416 416 LEU LEU A . n A 1 261 GLU 261 417 417 GLU GLU A . n A 1 262 ASN 262 418 418 ASN ASN A . n A 1 263 PRO 263 419 ? ? ? A . n A 1 264 GLU 264 420 ? ? ? A . n A 1 265 MET 265 421 ? ? ? A . n A 1 266 PHE 266 422 ? ? ? A . n A 1 267 GLU 267 423 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name ? _pdbx_SG_project.full_name_of_center 'Structural Proteomics in Europe' _pdbx_SG_project.initial_of_center SPINE # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 961 1 1 1 961 961 A . C 3 HOH 1 501 501 HOH HOH A . C 3 HOH 2 502 502 HOH HOH A . C 3 HOH 3 503 503 HOH HOH A . C 3 HOH 4 504 504 HOH HOH A . C 3 HOH 5 505 505 HOH HOH A . C 3 HOH 6 506 506 HOH HOH A . C 3 HOH 7 507 507 HOH HOH A . C 3 HOH 8 508 508 HOH HOH A . C 3 HOH 9 509 509 HOH HOH A . C 3 HOH 10 510 510 HOH HOH A . C 3 HOH 11 511 511 HOH HOH A . C 3 HOH 12 512 512 HOH HOH A . C 3 HOH 13 513 513 HOH HOH A . C 3 HOH 14 514 514 HOH HOH A . C 3 HOH 15 515 515 HOH HOH A . C 3 HOH 16 516 516 HOH HOH A . C 3 HOH 17 517 517 HOH HOH A . C 3 HOH 18 518 518 HOH HOH A . C 3 HOH 19 519 519 HOH HOH A . C 3 HOH 20 520 520 HOH HOH A . C 3 HOH 21 521 521 HOH HOH A . C 3 HOH 22 522 522 HOH HOH A . C 3 HOH 23 523 523 HOH HOH A . C 3 HOH 24 524 524 HOH HOH A . C 3 HOH 25 525 525 HOH HOH A . C 3 HOH 26 526 526 HOH HOH A . C 3 HOH 27 527 527 HOH HOH A . C 3 HOH 28 528 528 HOH HOH A . C 3 HOH 29 529 529 HOH HOH A . C 3 HOH 30 530 530 HOH HOH A . C 3 HOH 31 531 531 HOH HOH A . C 3 HOH 32 532 532 HOH HOH A . C 3 HOH 33 533 533 HOH HOH A . C 3 HOH 34 534 534 HOH HOH A . C 3 HOH 35 535 535 HOH HOH A . C 3 HOH 36 536 536 HOH HOH A . C 3 HOH 37 537 537 HOH HOH A . C 3 HOH 38 538 538 HOH HOH A . C 3 HOH 39 539 539 HOH HOH A . C 3 HOH 40 540 540 HOH HOH A . C 3 HOH 41 541 541 HOH HOH A . C 3 HOH 42 542 542 HOH HOH A . C 3 HOH 43 543 543 HOH HOH A . C 3 HOH 44 544 544 HOH HOH A . C 3 HOH 45 545 545 HOH HOH A . C 3 HOH 46 546 546 HOH HOH A . C 3 HOH 47 547 547 HOH HOH A . C 3 HOH 48 548 548 HOH HOH A . C 3 HOH 49 549 549 HOH HOH A . C 3 HOH 50 550 550 HOH HOH A . C 3 HOH 51 551 551 HOH HOH A . C 3 HOH 52 552 552 HOH HOH A . C 3 HOH 53 553 553 HOH HOH A . C 3 HOH 54 554 554 HOH HOH A . C 3 HOH 55 555 555 HOH HOH A . C 3 HOH 56 556 556 HOH HOH A . C 3 HOH 57 557 557 HOH HOH A . C 3 HOH 58 558 558 HOH HOH A . C 3 HOH 59 559 559 HOH HOH A . C 3 HOH 60 560 560 HOH HOH A . C 3 HOH 61 561 561 HOH HOH A . C 3 HOH 62 562 562 HOH HOH A . C 3 HOH 63 563 563 HOH HOH A . C 3 HOH 64 564 564 HOH HOH A . C 3 HOH 65 565 565 HOH HOH A . C 3 HOH 66 566 566 HOH HOH A . C 3 HOH 67 567 567 HOH HOH A . C 3 HOH 68 568 568 HOH HOH A . C 3 HOH 69 569 569 HOH HOH A . C 3 HOH 70 570 570 HOH HOH A . C 3 HOH 71 571 571 HOH HOH A . C 3 HOH 72 572 572 HOH HOH A . C 3 HOH 73 573 573 HOH HOH A . C 3 HOH 74 574 574 HOH HOH A . C 3 HOH 75 575 575 HOH HOH A . C 3 HOH 76 576 576 HOH HOH A . C 3 HOH 77 577 577 HOH HOH A . C 3 HOH 78 578 578 HOH HOH A . C 3 HOH 79 579 579 HOH HOH A . C 3 HOH 80 580 580 HOH HOH A . C 3 HOH 81 581 581 HOH HOH A . C 3 HOH 82 582 582 HOH HOH A . C 3 HOH 83 583 583 HOH HOH A . C 3 HOH 84 584 584 HOH HOH A . C 3 HOH 85 585 585 HOH HOH A . C 3 HOH 86 586 586 HOH HOH A . C 3 HOH 87 587 587 HOH HOH A . C 3 HOH 88 588 588 HOH HOH A . C 3 HOH 89 589 589 HOH HOH A . C 3 HOH 90 590 590 HOH HOH A . C 3 HOH 91 591 591 HOH HOH A . C 3 HOH 92 592 592 HOH HOH A . C 3 HOH 93 593 593 HOH HOH A . C 3 HOH 94 594 594 HOH HOH A . C 3 HOH 95 595 595 HOH HOH A . C 3 HOH 96 596 596 HOH HOH A . C 3 HOH 97 597 597 HOH HOH A . C 3 HOH 98 598 598 HOH HOH A . C 3 HOH 99 599 599 HOH HOH A . C 3 HOH 100 600 600 HOH HOH A . C 3 HOH 101 601 601 HOH HOH A . C 3 HOH 102 602 602 HOH HOH A . C 3 HOH 103 603 603 HOH HOH A . C 3 HOH 104 604 604 HOH HOH A . C 3 HOH 105 605 605 HOH HOH A . C 3 HOH 106 606 606 HOH HOH A . C 3 HOH 107 607 607 HOH HOH A . C 3 HOH 108 608 608 HOH HOH A . C 3 HOH 109 609 609 HOH HOH A . C 3 HOH 110 610 610 HOH HOH A . C 3 HOH 111 611 611 HOH HOH A . # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_defined_assembly _pdbx_struct_assembly.method_details ? _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 1999-03-02 2 'Structure model' 1 1 2008-03-25 3 'Structure model' 1 2 2011-07-13 4 'Structure model' 1 3 2023-08-09 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? _pdbx_audit_revision_details.details ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Version format compliance' 2 3 'Structure model' 'Version format compliance' 3 4 'Structure model' 'Database references' 4 4 'Structure model' 'Derived calculations' 5 4 'Structure model' Other 6 4 'Structure model' 'Refinement description' # loop_ _pdbx_audit_revision_category.ordinal _pdbx_audit_revision_category.revision_ordinal _pdbx_audit_revision_category.data_content_type _pdbx_audit_revision_category.category 1 4 'Structure model' database_2 2 4 'Structure model' pdbx_database_status 3 4 'Structure model' pdbx_initial_refinement_model 4 4 'Structure model' struct_site # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 4 'Structure model' '_database_2.pdbx_DOI' 2 4 'Structure model' '_database_2.pdbx_database_accession' 3 4 'Structure model' '_pdbx_database_status.process_site' 4 4 'Structure model' '_struct_site.pdbx_auth_asym_id' 5 4 'Structure model' '_struct_site.pdbx_auth_comp_id' 6 4 'Structure model' '_struct_site.pdbx_auth_seq_id' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal X-PLOR 'model building' 3.851 ? 1 X-PLOR refinement 3.851 ? 2 MARXDS 'data reduction' . ? 3 MARSCALE 'data scaling' . ? 4 X-PLOR phasing 3.851 ? 5 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 SER A 215 ? ? 32.41 46.60 2 1 ASP A 343 ? ? -94.32 33.89 # loop_ _pdbx_unobs_or_zero_occ_atoms.id _pdbx_unobs_or_zero_occ_atoms.PDB_model_num _pdbx_unobs_or_zero_occ_atoms.polymer_flag _pdbx_unobs_or_zero_occ_atoms.occupancy_flag _pdbx_unobs_or_zero_occ_atoms.auth_asym_id _pdbx_unobs_or_zero_occ_atoms.auth_comp_id _pdbx_unobs_or_zero_occ_atoms.auth_seq_id _pdbx_unobs_or_zero_occ_atoms.PDB_ins_code _pdbx_unobs_or_zero_occ_atoms.auth_atom_id _pdbx_unobs_or_zero_occ_atoms.label_alt_id _pdbx_unobs_or_zero_occ_atoms.label_asym_id _pdbx_unobs_or_zero_occ_atoms.label_comp_id _pdbx_unobs_or_zero_occ_atoms.label_seq_id _pdbx_unobs_or_zero_occ_atoms.label_atom_id 1 1 Y 1 A GLN 185 ? CG ? A GLN 29 CG 2 1 Y 1 A GLN 185 ? CD ? A GLN 29 CD 3 1 Y 1 A GLN 185 ? OE1 ? A GLN 29 OE1 4 1 Y 1 A GLN 185 ? NE2 ? A GLN 29 NE2 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MET 157 ? A MET 1 2 1 Y 1 A GLY 158 ? A GLY 2 3 1 Y 1 A SER 159 ? A SER 3 4 1 Y 1 A SER 160 ? A SER 4 5 1 Y 1 A HIS 161 ? A HIS 5 6 1 Y 1 A HIS 162 ? A HIS 6 7 1 Y 1 A HIS 163 ? A HIS 7 8 1 Y 1 A HIS 164 ? A HIS 8 9 1 Y 1 A HIS 165 ? A HIS 9 10 1 Y 1 A HIS 166 ? A HIS 10 11 1 Y 1 A SER 167 ? A SER 11 12 1 Y 1 A SER 168 ? A SER 12 13 1 Y 1 A GLY 169 ? A GLY 13 14 1 Y 1 A LEU 170 ? A LEU 14 15 1 Y 1 A VAL 171 ? A VAL 15 16 1 Y 1 A PRO 172 ? A PRO 16 17 1 Y 1 A ARG 173 ? A ARG 17 18 1 Y 1 A GLY 174 ? A GLY 18 19 1 Y 1 A SER 175 ? A SER 19 20 1 Y 1 A HIS 176 ? A HIS 20 21 1 Y 1 A MET 177 ? A MET 21 22 1 Y 1 A ASP 178 ? A ASP 22 23 1 Y 1 A SER 179 ? A SER 23 24 1 Y 1 A TYR 180 ? A TYR 24 25 1 Y 1 A GLU 181 ? A GLU 25 26 1 Y 1 A PRO 419 ? A PRO 263 27 1 Y 1 A GLU 420 ? A GLU 264 28 1 Y 1 A MET 421 ? A MET 265 29 1 Y 1 A PHE 422 ? A PHE 266 30 1 Y 1 A GLU 423 ? A GLU 267 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 '3-FLUORO-4-[2-HYDROXY-2-(5,5,8,8-TETRAMETHYL-5,6,7,8,-TETRAHYDRO-NAPHTALEN-2-YL)-ACETYLAMINO]-BENZOIC ACID' 961 3 water HOH # _pdbx_initial_refinement_model.id 1 _pdbx_initial_refinement_model.entity_id_list ? _pdbx_initial_refinement_model.type 'experimental model' _pdbx_initial_refinement_model.source_name PDB _pdbx_initial_refinement_model.accession_code 2LBD _pdbx_initial_refinement_model.details ? #