HEADER TRANSFERASE/TRANSFERASE INHIBITOR 21-JUN-13 4LBU TITLE TRNA GUANINE TRANSGLYCOSYLASE (TGT) IN COMPLEX WITH FURANOSIDE-BASED TITLE 2 LIN-BENZOGUANINE 2 COMPND MOL_ID: 1; COMPND 2 MOLECULE: QUEUINE TRNA-RIBOSYLTRANSFERASE; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: GUANINE INSERTION ENZYME, TRNA-GUANINE TRANSGLYCOSYLASE; COMPND 5 EC: 2.4.2.29; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ZYMOMONAS MOBILIS SUBSP. MOBILIS; SOURCE 3 ORGANISM_TAXID: 264203; SOURCE 4 STRAIN: ATCC 31821 / ZM4 / CP4; SOURCE 5 GENE: TGT, ZMO0363; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)CODONPLUS; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PPR-IBA2 KEYWDS TIM BARREL, GLYCOSYLTRANSFERASE, ZINC-BINDING, TRANSFERASE, KEYWDS 2 TRANSFERASE-TRANSFERASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR F.R.EHRMANN,A.HEINE,G.KLEBE REVDAT 3 20-SEP-23 4LBU 1 REMARK SEQADV LINK REVDAT 2 14-JAN-15 4LBU 1 JRNL REVDAT 1 24-DEC-14 4LBU 0 JRNL AUTH L.J.BARANDUN,F.R.EHRMANN,D.ZIMMERLI,F.IMMEKUS,M.GIROUD, JRNL AUTH 2 C.GRUNENFELDER,W.B.SCHWEIZER,B.BERNET,M.BETZ,A.HEINE, JRNL AUTH 3 G.KLEBE,F.DIEDERICH JRNL TITL REPLACEMENT OF WATER MOLECULES IN A PHOSPHATE BINDING SITE JRNL TITL 2 BY FURANOSIDE-APPENDED LIN-BENZOGUANINE LIGANDS OF JRNL TITL 3 TRNA-GUANINE TRANSGLYCOSYLASE (TGT). JRNL REF CHEMISTRY V. 21 126 2015 JRNL REFN ISSN 0947-6539 JRNL PMID 25483606 JRNL DOI 10.1002/CHEM.201405764 REMARK 2 REMARK 2 RESOLUTION. 1.17 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.17 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 14.91 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.3 REMARK 3 NUMBER OF REFLECTIONS : 136225 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.136 REMARK 3 R VALUE (WORKING SET) : 0.136 REMARK 3 FREE R VALUE : 0.152 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.020 REMARK 3 FREE R VALUE TEST SET COUNT : 6838 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 14.9110 - 3.6159 0.90 4039 174 0.1601 0.1662 REMARK 3 2 3.6159 - 2.8768 0.99 4379 238 0.1468 0.1331 REMARK 3 3 2.8768 - 2.5151 1.00 4340 237 0.1474 0.1669 REMARK 3 4 2.5151 - 2.2861 1.00 4396 197 0.1387 0.1551 REMARK 3 5 2.2861 - 2.1227 1.00 4379 233 0.1321 0.1540 REMARK 3 6 2.1227 - 1.9979 1.00 4332 212 0.1225 0.1502 REMARK 3 7 1.9979 - 1.8980 1.00 4405 229 0.1213 0.1348 REMARK 3 8 1.8980 - 1.8155 1.00 4309 248 0.1122 0.1435 REMARK 3 9 1.8155 - 1.7458 1.00 4318 224 0.1094 0.1298 REMARK 3 10 1.7458 - 1.6856 1.00 4310 242 0.1033 0.1303 REMARK 3 11 1.6856 - 1.6330 1.00 4361 232 0.0995 0.1318 REMARK 3 12 1.6330 - 1.5863 1.00 4344 218 0.0952 0.1174 REMARK 3 13 1.5863 - 1.5446 1.00 4323 246 0.0950 0.1168 REMARK 3 14 1.5446 - 1.5070 1.00 4301 257 0.0959 0.1310 REMARK 3 15 1.5070 - 1.4728 1.00 4359 223 0.1065 0.1288 REMARK 3 16 1.4728 - 1.4414 1.00 4326 221 0.1127 0.1406 REMARK 3 17 1.4414 - 1.4126 1.00 4317 227 0.1144 0.1482 REMARK 3 18 1.4126 - 1.3860 1.00 4296 258 0.1213 0.1461 REMARK 3 19 1.3860 - 1.3613 1.00 4336 230 0.1248 0.1570 REMARK 3 20 1.3613 - 1.3382 1.00 4366 234 0.1301 0.1572 REMARK 3 21 1.3382 - 1.3166 1.00 4337 198 0.1372 0.1807 REMARK 3 22 1.3166 - 1.2964 1.00 4313 230 0.1457 0.1896 REMARK 3 23 1.2964 - 1.2773 1.00 4310 242 0.1550 0.1824 REMARK 3 24 1.2773 - 1.2593 1.00 4341 229 0.1664 0.1935 REMARK 3 25 1.2593 - 1.2423 1.00 4329 208 0.1707 0.1834 REMARK 3 26 1.2423 - 1.2262 1.00 4330 226 0.1817 0.1890 REMARK 3 27 1.2262 - 1.2109 1.00 4264 255 0.1869 0.2142 REMARK 3 28 1.2109 - 1.1963 0.99 4319 228 0.1985 0.2261 REMARK 3 29 1.1963 - 1.1824 0.98 4246 214 0.2119 0.2384 REMARK 3 30 1.1824 - 1.1700 0.94 4062 228 0.2176 0.2287 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.090 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 13.670 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 11.90 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 3068 REMARK 3 ANGLE : 1.119 4157 REMARK 3 CHIRALITY : 0.071 438 REMARK 3 PLANARITY : 0.007 547 REMARK 3 DIHEDRAL : 12.589 1165 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LBU COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080433. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 17-NOV-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : BESSY REMARK 200 BEAMLINE : 14.2 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.85507 REMARK 200 MONOCHROMATOR : SI-111 CRYSTAL REMARK 200 OPTICS : RH-COATED SILICON WITH INDIRECT REMARK 200 WATER COOLING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RAYONIX MX-225 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 136269 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.170 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.4 REMARK 200 DATA REDUNDANCY : 3.100 REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : 0.04300 REMARK 200 FOR THE DATA SET : 23.5000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.17 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.19 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.6 REMARK 200 DATA REDUNDANCY IN SHELL : 2.90 REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : 0.48000 REMARK 200 FOR SHELL : 2.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1PUD REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.72 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.40 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 13% PEG 8000, 100MM MES, 1MM DTT, 10% REMARK 280 DMSO, PH 5.5, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 288K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 45.17050 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 32.59850 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 45.17050 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 32.59850 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 3190 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -17.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 -15.54083 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 140.31802 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 743 LIES ON A SPECIAL POSITION. REMARK 375 HOH A 899 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 SER A 0 REMARK 465 MET A 1 REMARK 465 VAL A 2 REMARK 465 GLU A 3 REMARK 465 ALA A 4 REMARK 465 THR A 5 REMARK 465 ALA A 6 REMARK 465 GLN A 7 REMARK 465 GLU A 8 REMARK 465 THR A 9 REMARK 465 SER A 126 REMARK 465 HIS A 127 REMARK 465 LEU A 128 REMARK 465 ASP A 129 REMARK 465 GLY A 130 REMARK 465 ARG A 384 REMARK 465 ASN A 385 REMARK 465 SER A 386 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ASP A 10 CG OD1 OD2 REMARK 470 LYS A 116 CG CD CE NZ REMARK 470 LYS A 125 CG CD CE NZ REMARK 470 SER A 131 OG REMARK 470 ARG A 132 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 167 NE CZ NH1 NH2 REMARK 470 LYS A 190 CG CD CE NZ REMARK 470 LYS A 264 CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 48 42.24 -98.89 REMARK 500 GLN A 203 -162.77 -122.43 REMARK 500 SER A 205 -132.31 55.90 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 318 SG REMARK 620 2 CYS A 320 SG 106.0 REMARK 620 3 CYS A 323 SG 114.4 116.3 REMARK 620 4 HIS A 349 ND1 105.3 115.8 98.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1WJ A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CL A 406 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4KWO RELATED DB: PDB REMARK 900 TRNA GUANINE TRANSGLYCOSYLASE (TGT) IN COMPLEX WITH FURANOSIDE- REMARK 900 BASED LIN-BENZOGUANINE 3 REMARK 900 RELATED ID: 2Z7K RELATED DB: PDB REMARK 900 TRNA-GUANINE TRANSGLYCOSYLASE (TGT) IN COMPLEX WITH 2-AMINO-LIN- REMARK 900 BENZOGUANINE REMARK 900 RELATED ID: 3EOS RELATED DB: PDB REMARK 900 TRNA-GUANINE TRANSGLYCOSYLASE IN COMPLEX WITH 6-AMINO-4-{2- REMARK 900 [(CYCLOHEXYLMETHYL)AMINO]ETHYL}-2-(METHYLAMINO)-1,7-DIHYDRO-8H- REMARK 900 IMIDAZO[4,5-G]QUINAZOLIN-8-ONE REMARK 900 RELATED ID: 1PUD RELATED DB: PDB REMARK 900 TRNA-GUANINE TRANSGLYCOSYLASE REMARK 900 RELATED ID: 4LEQ RELATED DB: PDB REMARK 900 TRNA GUANINE TRANSGLYCOSYLASE (TGT) IN COMPLEX WITH FURANOSIDE- REMARK 900 BASED LIN-BENZOGUANINE 1 DBREF 4LBU A 1 386 UNP P28720 TGT_ZYMMO 1 386 SEQADV 4LBU GLY A -1 UNP P28720 EXPRESSION TAG SEQADV 4LBU SER A 0 UNP P28720 EXPRESSION TAG SEQADV 4LBU LYS A 312 UNP P28720 THR 312 CONFLICT SEQRES 1 A 388 GLY SER MET VAL GLU ALA THR ALA GLN GLU THR ASP ARG SEQRES 2 A 388 PRO ARG PHE SER PHE SER ILE ALA ALA ARG GLU GLY LYS SEQRES 3 A 388 ALA ARG THR GLY THR ILE GLU MET LYS ARG GLY VAL ILE SEQRES 4 A 388 ARG THR PRO ALA PHE MET PRO VAL GLY THR ALA ALA THR SEQRES 5 A 388 VAL LYS ALA LEU LYS PRO GLU THR VAL ARG ALA THR GLY SEQRES 6 A 388 ALA ASP ILE ILE LEU GLY ASN THR TYR HIS LEU MET LEU SEQRES 7 A 388 ARG PRO GLY ALA GLU ARG ILE ALA LYS LEU GLY GLY LEU SEQRES 8 A 388 HIS SER PHE MET GLY TRP ASP ARG PRO ILE LEU THR ASP SEQRES 9 A 388 SER GLY GLY TYR GLN VAL MET SER LEU SER SER LEU THR SEQRES 10 A 388 LYS GLN SER GLU GLU GLY VAL THR PHE LYS SER HIS LEU SEQRES 11 A 388 ASP GLY SER ARG HIS MET LEU SER PRO GLU ARG SER ILE SEQRES 12 A 388 GLU ILE GLN HIS LEU LEU GLY SER ASP ILE VAL MET ALA SEQRES 13 A 388 PHE ASP GLU CYS THR PRO TYR PRO ALA THR PRO SER ARG SEQRES 14 A 388 ALA ALA SER SER MET GLU ARG SER MET ARG TRP ALA LYS SEQRES 15 A 388 ARG SER ARG ASP ALA PHE ASP SER ARG LYS GLU GLN ALA SEQRES 16 A 388 GLU ASN ALA ALA LEU PHE GLY ILE GLN GLN GLY SER VAL SEQRES 17 A 388 PHE GLU ASN LEU ARG GLN GLN SER ALA ASP ALA LEU ALA SEQRES 18 A 388 GLU ILE GLY PHE ASP GLY TYR ALA VAL GLY GLY LEU ALA SEQRES 19 A 388 VAL GLY GLU GLY GLN ASP GLU MET PHE ARG VAL LEU ASP SEQRES 20 A 388 PHE SER VAL PRO MET LEU PRO ASP ASP LYS PRO HIS TYR SEQRES 21 A 388 LEU MET GLY VAL GLY LYS PRO ASP ASP ILE VAL GLY ALA SEQRES 22 A 388 VAL GLU ARG GLY ILE ASP MET PHE ASP CYS VAL LEU PRO SEQRES 23 A 388 THR ARG SER GLY ARG ASN GLY GLN ALA PHE THR TRP ASP SEQRES 24 A 388 GLY PRO ILE ASN ILE ARG ASN ALA ARG PHE SER GLU ASP SEQRES 25 A 388 LEU LYS PRO LEU ASP SER GLU CYS HIS CYS ALA VAL CYS SEQRES 26 A 388 GLN LYS TRP SER ARG ALA TYR ILE HIS HIS LEU ILE ARG SEQRES 27 A 388 ALA GLY GLU ILE LEU GLY ALA MET LEU MET THR GLU HIS SEQRES 28 A 388 ASN ILE ALA PHE TYR GLN GLN LEU MET GLN LYS ILE ARG SEQRES 29 A 388 ASP SER ILE SER GLU GLY ARG PHE SER GLN PHE ALA GLN SEQRES 30 A 388 ASP PHE ARG ALA ARG TYR PHE ALA ARG ASN SER HET 1WJ A 401 29 HET ZN A 402 1 HET GOL A 403 6 HET GOL A 404 6 HET GOL A 405 6 HET CL A 406 1 HETNAM 1WJ METHYL 6-[6-AMINO-2-(METHYLAMINO)-8-OXO-7,8-DIHYDRO-1H- HETNAM 2 1WJ IMIDAZO[4,5-G]QUINAZOLIN-4-YL]-5,6-DIDEOXY-2-O-METHYL- HETNAM 3 1WJ BETA-D-RIBO-HEXOFURANOSIDE HETNAM ZN ZINC ION HETNAM GOL GLYCEROL HETNAM CL CHLORIDE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 1WJ C18 H24 N6 O5 FORMUL 3 ZN ZN 2+ FORMUL 4 GOL 3(C3 H8 O3) FORMUL 7 CL CL 1- FORMUL 8 HOH *435(H2 O) HELIX 1 1 LYS A 55 THR A 62 1 8 HELIX 2 2 THR A 71 ARG A 77 1 7 HELIX 3 3 GLY A 79 LEU A 86 1 8 HELIX 4 4 GLY A 88 GLY A 94 1 7 HELIX 5 5 GLY A 104 LEU A 111 1 8 HELIX 6 6 SER A 136 GLY A 148 1 13 HELIX 7 7 THR A 164 ARG A 189 1 26 HELIX 8 8 ARG A 189 ALA A 196 1 8 HELIX 9 9 PHE A 207 GLY A 222 1 16 HELIX 10 10 GLY A 236 VAL A 248 1 13 HELIX 11 11 PRO A 249 LEU A 251 5 3 HELIX 12 12 LYS A 264 ARG A 274 1 11 HELIX 13 13 VAL A 282 ASN A 290 1 9 HELIX 14 14 ASN A 304 SER A 308 5 5 HELIX 15 15 CYS A 320 TRP A 326 1 7 HELIX 16 16 SER A 327 ALA A 337 1 11 HELIX 17 17 GLU A 339 GLU A 367 1 29 HELIX 18 18 ARG A 369 PHE A 382 1 14 SHEET 1 A 3 SER A 15 GLU A 22 0 SHEET 2 A 3 ALA A 25 MET A 32 -1 O THR A 29 N SER A 17 SHEET 3 A 3 GLY A 35 THR A 39 -1 O ILE A 37 N ILE A 30 SHEET 1 B 8 ALA A 41 MET A 43 0 SHEET 2 B 8 MET A 278 ASP A 280 1 O PHE A 279 N MET A 43 SHEET 3 B 8 HIS A 257 LEU A 259 1 N LEU A 259 O MET A 278 SHEET 4 B 8 GLY A 225 VAL A 228 1 N VAL A 228 O TYR A 258 SHEET 5 B 8 ALA A 197 GLN A 202 1 N GLY A 200 O ALA A 227 SHEET 6 B 8 ILE A 151 MET A 153 1 N VAL A 152 O ALA A 197 SHEET 7 B 8 ILE A 99 ASP A 102 1 N THR A 101 O ILE A 151 SHEET 8 B 8 ILE A 67 ASN A 70 1 N ILE A 67 O LEU A 100 SHEET 1 C 3 THR A 115 GLN A 117 0 SHEET 2 C 3 VAL A 122 PHE A 124 -1 O THR A 123 N LYS A 116 SHEET 3 C 3 HIS A 133 LEU A 135 -1 O HIS A 133 N PHE A 124 SHEET 1 D 2 GLN A 292 ALA A 293 0 SHEET 2 D 2 ILE A 300 ASN A 301 -1 O ILE A 300 N ALA A 293 LINK SG CYS A 318 ZN ZN A 402 1555 1555 2.33 LINK SG CYS A 320 ZN ZN A 402 1555 1555 2.32 LINK SG CYS A 323 ZN ZN A 402 1555 1555 2.32 LINK ND1 HIS A 349 ZN ZN A 402 1555 1555 2.10 CISPEP 1 THR A 39 PRO A 40 0 0.25 CISPEP 2 ARG A 77 PRO A 78 0 6.84 CISPEP 3 TYR A 161 PRO A 162 0 -2.91 CISPEP 4 VAL A 262 GLY A 263 0 -0.46 SITE 1 AC1 19 THR A 47 LEU A 68 GLY A 69 ASN A 70 SITE 2 AC1 19 ASP A 102 TYR A 106 GLN A 107 ASP A 156 SITE 3 AC1 19 CYS A 158 ILE A 201 GLN A 203 GLY A 229 SITE 4 AC1 19 GLY A 230 LEU A 231 ALA A 232 MET A 260 SITE 5 AC1 19 GLY A 261 ASP A 280 HOH A 539 SITE 1 AC2 4 CYS A 318 CYS A 320 CYS A 323 HIS A 349 SITE 1 AC3 8 PRO A 56 GLU A 57 GLY A 94 TRP A 95 SITE 2 AC3 8 ASP A 96 ARG A 97 HOH A 696 HOH A 777 SITE 1 AC4 7 GLU A 317 LYS A 360 PHE A 373 ARG A 380 SITE 2 AC4 7 HOH A 547 HOH A 720 HOH A 729 SITE 1 AC5 4 LEU A 311 CYS A 323 TRP A 326 HOH A 889 SITE 1 AC6 3 THR A 285 ARG A 289 HOH A 879 CRYST1 90.341 65.197 70.588 90.00 96.32 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011069 0.000000 0.001227 0.00000 SCALE2 0.000000 0.015338 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014253 0.00000