HEADER PROTEIN BINDING 21-JUN-13 4LC0 TITLE IDENTIFYING LIGAND BINDING HOT SPOTS IN PROTEINS USING BROMINATED TITLE 2 FRAGMENTS COMPND MOL_ID: 1; COMPND 2 MOLECULE: ELONGATION FACTOR TU-A; COMPND 3 CHAIN: A; COMPND 4 SYNONYM: EF-TU-A; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: THERMUS THERMOPHILUS; SOURCE 3 ORGANISM_TAXID: 274; SOURCE 4 GENE: TUF, TUFA; SOURCE 5 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 6 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 7 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 8 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 9 EXPRESSION_SYSTEM_PLASMID: PKK223-3 KEYWDS GTPASE, PROTEIN BINDING EXPDTA X-RAY DIFFRACTION AUTHOR M.K.GROFTEHAUGE,M.THERKELSEN,R.TAANING,T.SKRYDSTRUP,J.P.MORTH, AUTHOR 2 P.NISSEN REVDAT 2 20-SEP-23 4LC0 1 REMARK SEQADV LINK REVDAT 1 11-SEP-13 4LC0 0 JRNL AUTH M.K.GRFTEHAUGE,M.O.THERKELSEN,R.TAANING,T.SKRYDSTRUP, JRNL AUTH 2 J.P.MORTH,P.NISSEN JRNL TITL IDENTIFYING LIGAND-BINDING HOT SPOTS IN PROTEINS USING JRNL TITL 2 BROMINATED FRAGMENTS. JRNL REF ACTA CRYSTALLOGR.,SECT.F V. 69 1060 2013 JRNL REFN ESSN 1744-3091 JRNL PMID 23989163 JRNL DOI 10.1107/S1744309113018551 REMARK 2 REMARK 2 RESOLUTION. 2.22 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX DEV_1370 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.22 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.81 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.360 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 27508 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.163 REMARK 3 R VALUE (WORKING SET) : 0.161 REMARK 3 FREE R VALUE : 0.201 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.030 REMARK 3 FREE R VALUE TEST SET COUNT : 1383 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.8082 - 4.7801 1.00 2681 145 0.1371 0.1585 REMARK 3 2 4.7801 - 3.7963 1.00 2609 176 0.1212 0.1528 REMARK 3 3 3.7963 - 3.3171 1.00 2636 125 0.1538 0.1964 REMARK 3 4 3.3171 - 3.0141 1.00 2614 149 0.1765 0.2330 REMARK 3 5 3.0141 - 2.7982 1.00 2624 144 0.1947 0.2627 REMARK 3 6 2.7982 - 2.6333 1.00 2639 104 0.1915 0.2440 REMARK 3 7 2.6333 - 2.5015 1.00 2644 139 0.1800 0.2473 REMARK 3 8 2.5015 - 2.3926 1.00 2605 146 0.1773 0.2257 REMARK 3 9 2.3926 - 2.3006 1.00 2607 135 0.1850 0.2470 REMARK 3 10 2.3006 - 2.2212 0.94 2466 120 0.2322 0.2814 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.250 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 39.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 3249 REMARK 3 ANGLE : 1.159 4433 REMARK 3 CHIRALITY : 0.073 502 REMARK 3 PLANARITY : 0.005 574 REMARK 3 DIHEDRAL : 13.865 1198 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 3 THROUGH 214 ) REMARK 3 ORIGIN FOR THE GROUP (A): 41.5446 2.6515 50.3886 REMARK 3 T TENSOR REMARK 3 T11: 0.2316 T22: 0.2681 REMARK 3 T33: 0.1689 T12: 0.0647 REMARK 3 T13: 0.0022 T23: -0.0723 REMARK 3 L TENSOR REMARK 3 L11: 2.9365 L22: 2.1398 REMARK 3 L33: 2.1815 L12: -0.4377 REMARK 3 L13: 0.4885 L23: -0.2193 REMARK 3 S TENSOR REMARK 3 S11: -0.1525 S12: -0.5073 S13: 0.3347 REMARK 3 S21: 0.2158 S22: 0.1410 S23: -0.1029 REMARK 3 S31: -0.1719 S32: -0.0716 S33: -0.0136 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 215 THROUGH 312 ) REMARK 3 ORIGIN FOR THE GROUP (A): 56.8089 -17.7383 41.7807 REMARK 3 T TENSOR REMARK 3 T11: 0.1478 T22: 0.2335 REMARK 3 T33: 0.2064 T12: 0.0500 REMARK 3 T13: 0.0548 T23: 0.0419 REMARK 3 L TENSOR REMARK 3 L11: 5.4490 L22: 5.1047 REMARK 3 L33: 4.4030 L12: -0.6266 REMARK 3 L13: 0.7445 L23: 1.1286 REMARK 3 S TENSOR REMARK 3 S11: 0.0042 S12: 0.0140 S13: -0.3578 REMARK 3 S21: -0.1588 S22: -0.0410 S23: -0.0819 REMARK 3 S31: 0.1126 S32: 0.2253 S33: 0.0476 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 313 THROUGH 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 30.2251 -24.6259 43.9429 REMARK 3 T TENSOR REMARK 3 T11: 0.3117 T22: 0.2846 REMARK 3 T33: 0.6164 T12: -0.0691 REMARK 3 T13: 0.0001 T23: 0.1273 REMARK 3 L TENSOR REMARK 3 L11: 0.6179 L22: 4.9944 REMARK 3 L33: 2.2663 L12: 1.6973 REMARK 3 L13: 0.4827 L23: 0.5629 REMARK 3 S TENSOR REMARK 3 S11: 0.2094 S12: -0.5676 S13: -0.9501 REMARK 3 S21: 0.2850 S22: -0.1982 S23: 0.2225 REMARK 3 S31: 0.2303 S32: -0.2369 S33: -0.0340 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LC0 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080439. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : ENRAF-NONIUS FR571 REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : IMAGE PLATE REMARK 200 DETECTOR MANUFACTURER : MAR SCANNER 345 MM PLATE REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XSCALE REMARK 200 DATA SCALING SOFTWARE : AIMLESS 0.1.29, XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 27508 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.220 REMARK 200 RESOLUTION RANGE LOW (A) : 30.810 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 90.3 REMARK 200 DATA REDUNDANCY : 1.700 REMARK 200 R MERGE (I) : 0.08100 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 14.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.22 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.28 REMARK 200 COMPLETENESS FOR SHELL (%) : 74.2 REMARK 200 DATA REDUNDANCY IN SHELL : 1.40 REMARK 200 R MERGE FOR SHELL (I) : 0.23700 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.800 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER 2.5.4 REMARK 200 STARTING MODEL: PDB ENTRY 4H9G REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 61.55 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.20 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 1.8M AMMONIUM SULFATE, 15% SUCROSE, REMARK 280 0.1M TRIS-HCL, PH 7.6, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 73.41500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 49.22000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 73.41500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 49.22000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 32580 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -176.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 -1.000000 0.000000 0.000000 138.81992 REMARK 350 BIOMT2 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 0.000000 -1.000000 78.99493 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 LYS A 2 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 4 CD OE1 OE2 REMARK 470 LYS A 52 CD CE NZ REMARK 470 LYS A 90 CD CE NZ REMARK 470 ASP A 142 OD1 OD2 REMARK 470 GLU A 261 CD OE1 OE2 REMARK 470 ARG A 274 CD NE CZ NH1 NH2 REMARK 470 GLN A 278 CD OE1 NE2 REMARK 470 GLU A 326 CD OE1 OE2 REMARK 470 LYS A 402 CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 258 -32.29 70.75 REMARK 500 ARG A 345 -117.93 45.26 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 502 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 THR A 25 OG1 REMARK 620 2 THR A 62 OG1 87.0 REMARK 620 3 GNP A 501 O1G 165.9 100.5 REMARK 620 4 GNP A 501 O2B 86.7 165.3 88.5 REMARK 620 5 HOH A 720 O 79.5 96.2 87.8 95.7 REMARK 620 6 HOH A 721 O 85.8 87.7 106.2 78.6 164.6 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GNP A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NH4 A 503 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 504 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 505 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 506 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 507 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 508 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 509 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 510 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LBV RELATED DB: PDB REMARK 900 RELATED ID: 4LBW RELATED DB: PDB REMARK 900 RELATED ID: 4LBY RELATED DB: PDB REMARK 900 RELATED ID: 4LBZ RELATED DB: PDB DBREF 4LC0 A 2 405 UNP P60338 EFTU1_THETH 3 406 SEQADV 4LC0 LYS A 264 UNP P60338 ARG 265 CONFLICT SEQRES 1 A 404 LYS GLY GLU PHE VAL ARG THR LYS PRO HIS VAL ASN VAL SEQRES 2 A 404 GLY THR ILE GLY HIS VAL ASP HIS GLY LYS THR THR LEU SEQRES 3 A 404 THR ALA ALA LEU THR TYR VAL ALA ALA ALA GLU ASN PRO SEQRES 4 A 404 ASN VAL GLU VAL LYS ASP TYR GLY ASP ILE ASP LYS ALA SEQRES 5 A 404 PRO GLU GLU ARG ALA ARG GLY ILE THR ILE ASN THR ALA SEQRES 6 A 404 HIS VAL GLU TYR GLU THR ALA LYS ARG HIS TYR SER HIS SEQRES 7 A 404 VAL ASP CYS PRO GLY HIS ALA ASP TYR ILE LYS ASN MET SEQRES 8 A 404 ILE THR GLY ALA ALA GLN MET ASP GLY ALA ILE LEU VAL SEQRES 9 A 404 VAL SER ALA ALA ASP GLY PRO MET PRO GLN THR ARG GLU SEQRES 10 A 404 HIS ILE LEU LEU ALA ARG GLN VAL GLY VAL PRO TYR ILE SEQRES 11 A 404 VAL VAL PHE MET ASN LYS VAL ASP MET VAL ASP ASP PRO SEQRES 12 A 404 GLU LEU LEU ASP LEU VAL GLU MET GLU VAL ARG ASP LEU SEQRES 13 A 404 LEU ASN GLN TYR GLU PHE PRO GLY ASP GLU VAL PRO VAL SEQRES 14 A 404 ILE ARG GLY SER ALA LEU LEU ALA LEU GLU GLN MET HIS SEQRES 15 A 404 ARG ASN PRO LYS THR ARG ARG GLY GLU ASN GLU TRP VAL SEQRES 16 A 404 ASP LYS ILE TRP GLU LEU LEU ASP ALA ILE ASP GLU TYR SEQRES 17 A 404 ILE PRO THR PRO VAL ARG ASP VAL ASP LYS PRO PHE LEU SEQRES 18 A 404 MET PRO VAL GLU ASP VAL PHE THR ILE THR GLY ARG GLY SEQRES 19 A 404 THR VAL ALA THR GLY ARG ILE GLU ARG GLY LYS VAL LYS SEQRES 20 A 404 VAL GLY ASP GLU VAL GLU ILE VAL GLY LEU ALA PRO GLU SEQRES 21 A 404 THR ARG LYS THR VAL VAL THR GLY VAL GLU MET HIS ARG SEQRES 22 A 404 LYS THR LEU GLN GLU GLY ILE ALA GLY ASP ASN VAL GLY SEQRES 23 A 404 VAL LEU LEU ARG GLY VAL SER ARG GLU GLU VAL GLU ARG SEQRES 24 A 404 GLY GLN VAL LEU ALA LYS PRO GLY SER ILE THR PRO HIS SEQRES 25 A 404 THR LYS PHE GLU ALA SER VAL TYR VAL LEU LYS LYS GLU SEQRES 26 A 404 GLU GLY GLY ARG HIS THR GLY PHE PHE SER GLY TYR ARG SEQRES 27 A 404 PRO GLN PHE TYR PHE ARG THR THR ASP VAL THR GLY VAL SEQRES 28 A 404 VAL GLN LEU PRO PRO GLY VAL GLU MET VAL MET PRO GLY SEQRES 29 A 404 ASP ASN VAL THR PHE THR VAL GLU LEU ILE LYS PRO VAL SEQRES 30 A 404 ALA LEU GLU GLU GLY LEU ARG PHE ALA ILE ARG GLU GLY SEQRES 31 A 404 GLY ARG THR VAL GLY ALA GLY VAL VAL THR LYS ILE LEU SEQRES 32 A 404 GLU HET GNP A 501 32 HET MG A 502 1 HET NH4 A 503 1 HET SO4 A 504 5 HET SO4 A 505 5 HET SO4 A 506 5 HET SO4 A 507 5 HET SO4 A 508 5 HET SO4 A 509 5 HET SO4 A 510 5 HETNAM GNP PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER HETNAM MG MAGNESIUM ION HETNAM NH4 AMMONIUM ION HETNAM SO4 SULFATE ION FORMUL 2 GNP C10 H17 N6 O13 P3 FORMUL 3 MG MG 2+ FORMUL 4 NH4 H4 N 1+ FORMUL 5 SO4 7(O4 S 2-) FORMUL 12 HOH *194(H2 O) HELIX 1 1 GLY A 23 ASN A 39 1 17 HELIX 2 2 ASP A 46 ASP A 51 1 6 HELIX 3 3 ALA A 53 GLY A 60 1 8 HELIX 4 4 HIS A 85 ASP A 87 5 3 HELIX 5 5 TYR A 88 ALA A 97 1 10 HELIX 6 6 MET A 113 VAL A 126 1 14 HELIX 7 7 LYS A 137 VAL A 141 5 5 HELIX 8 8 ASP A 143 TYR A 161 1 19 HELIX 9 9 SER A 174 ASN A 185 1 12 HELIX 10 10 ASN A 193 ILE A 210 1 18 HELIX 11 11 LYS A 324 GLY A 328 5 5 SHEET 1 A 6 ALA A 66 GLU A 71 0 SHEET 2 A 6 HIS A 76 ASP A 81 -1 O HIS A 79 N VAL A 68 SHEET 3 A 6 HIS A 11 ILE A 17 1 N VAL A 12 O HIS A 76 SHEET 4 A 6 ALA A 102 SER A 107 1 O ILE A 103 N GLY A 15 SHEET 5 A 6 ILE A 131 ASN A 136 1 O VAL A 132 N LEU A 104 SHEET 6 A 6 VAL A 170 ARG A 172 1 O ILE A 171 N MET A 135 SHEET 1 B 7 LEU A 222 PRO A 224 0 SHEET 2 B 7 VAL A 303 ALA A 305 -1 O LEU A 304 N MET A 223 SHEET 3 B 7 GLU A 252 VAL A 256 -1 N VAL A 256 O VAL A 303 SHEET 4 B 7 ARG A 263 GLU A 271 -1 O ARG A 263 N ILE A 255 SHEET 5 B 7 ASN A 285 LEU A 290 -1 O LEU A 289 N THR A 268 SHEET 6 B 7 GLY A 235 ARG A 241 -1 N THR A 236 O LEU A 290 SHEET 7 B 7 ASP A 227 ILE A 231 -1 N ILE A 231 O GLY A 235 SHEET 1 C 2 LYS A 246 LYS A 248 0 SHEET 2 C 2 GLU A 279 ILE A 281 -1 O GLY A 280 N VAL A 247 SHEET 1 D 7 HIS A 313 VAL A 322 0 SHEET 2 D 7 ASN A 367 VAL A 378 -1 O VAL A 368 N VAL A 320 SHEET 3 D 7 THR A 347 GLN A 354 -1 N GLN A 354 O THR A 371 SHEET 4 D 7 GLN A 341 PHE A 344 -1 N PHE A 344 O THR A 347 SHEET 5 D 7 ARG A 385 GLU A 390 -1 O ARG A 389 N GLN A 341 SHEET 6 D 7 ARG A 393 GLU A 405 -1 O GLY A 398 N PHE A 386 SHEET 7 D 7 HIS A 313 VAL A 322 -1 N GLU A 317 O LYS A 402 LINK OG1 THR A 25 MG MG A 502 1555 1555 2.16 LINK OG1 THR A 62 MG MG A 502 1555 1555 1.98 LINK O1G GNP A 501 MG MG A 502 1555 1555 1.86 LINK O2B GNP A 501 MG MG A 502 1555 1555 2.21 LINK MG MG A 502 O HOH A 720 1555 1555 2.08 LINK MG MG A 502 O HOH A 721 1555 1555 2.10 SITE 1 AC1 26 VAL A 20 ASP A 21 HIS A 22 GLY A 23 SITE 2 AC1 26 LYS A 24 THR A 25 THR A 26 TYR A 47 SITE 3 AC1 26 ILE A 61 THR A 62 GLY A 84 ASN A 136 SITE 4 AC1 26 LYS A 137 ASP A 139 MET A 140 SER A 174 SITE 5 AC1 26 ALA A 175 LEU A 176 GLN A 354 MG A 502 SITE 6 AC1 26 HOH A 606 HOH A 635 HOH A 720 HOH A 721 SITE 7 AC1 26 HOH A 782 HOH A 783 SITE 1 AC2 5 THR A 25 THR A 62 GNP A 501 HOH A 720 SITE 2 AC2 5 HOH A 721 SITE 1 AC3 6 ILE A 50 ASP A 51 GLU A 56 THR A 62 SITE 2 AC3 6 ASN A 64 HOH A 602 SITE 1 AC4 5 MET A 113 PRO A 114 ARG A 117 HOH A 737 SITE 2 AC4 5 HOH A 784 SITE 1 AC5 4 LYS A 45 HIS A 67 HIS A 273 ARG A 274 SITE 1 AC6 2 ARG A 59 HIS A 85 SITE 1 AC7 3 LYS A 248 ARG A 291 HOH A 710 SITE 1 AC8 5 ARG A 330 HIS A 331 THR A 332 ARG A 393 SITE 2 AC8 5 HOH A 763 SITE 1 AC9 3 ARG A 57 GLY A 358 HOH A 634 SITE 1 BC1 2 GLN A 181 ARG A 184 CRYST1 146.830 98.440 39.700 90.00 95.79 90.00 C 1 2 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006811 0.000000 0.000691 0.00000 SCALE2 0.000000 0.010158 0.000000 0.00000 SCALE3 0.000000 0.000000 0.025318 0.00000