HEADER CHAPERONE 21-JUN-13 4LC1 TITLE MEAB, A BACTERIAL HOMOLOG OF MMAA, BOUND TO GDP AND CRYSTALLIZED IN TITLE 2 THE PRESENCE OF GDP AND [ALF4]- COMPND MOL_ID: 1; COMPND 2 MOLECULE: METHYLMALONYL-COA MUTASE ACCESSORY PROTEIN; COMPND 3 CHAIN: A, B; COMPND 4 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: METHYLOBACTERIUM EXTORQUENS; SOURCE 3 ORGANISM_TAXID: 272630; SOURCE 4 STRAIN: AM1; SOURCE 5 GENE: MEAB, MEXAM1_META1P0188; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3); SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET-21D(+) KEYWDS ALPHA AND BETA PROTEIN, METALLOCHAPERONE, CHAPERONE EXPDTA X-RAY DIFFRACTION AUTHOR M.KOUTMOS,D.PADOVANI,M.LOFGREN,R.BANERJEE REVDAT 3 20-SEP-23 4LC1 1 REMARK SEQADV REVDAT 2 13-NOV-13 4LC1 1 JRNL REVDAT 1 25-SEP-13 4LC1 0 JRNL AUTH M.LOFGREN,M.KOUTMOS,R.BANERJEE JRNL TITL AUTOINHIBITION AND SIGNALING BY THE SWITCH II MOTIF IN THE JRNL TITL 2 G-PROTEIN CHAPERONE OF A RADICAL B12 ENZYME. JRNL REF J.BIOL.CHEM. V. 288 30980 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 23996001 JRNL DOI 10.1074/JBC.M113.499970 REMARK 2 REMARK 2 RESOLUTION. 1.80 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.80 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.89 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 3 NUMBER OF REFLECTIONS : 57038 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.181 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.217 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 3026 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.80 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.85 REMARK 3 REFLECTION IN BIN (WORKING SET) : 4020 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.2300 REMARK 3 BIN FREE R VALUE SET COUNT : 205 REMARK 3 BIN FREE R VALUE : 0.2750 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4613 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 62 REMARK 3 SOLVENT ATOMS : 460 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 27.25 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 0.65000 REMARK 3 B22 (A**2) : -1.38000 REMARK 3 B33 (A**2) : 1.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.48000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.124 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.120 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.083 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.606 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.958 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.940 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4788 ; 0.012 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4798 ; 0.003 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6508 ; 1.483 ; 1.987 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10877 ; 2.981 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 629 ; 5.312 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 184 ;32.787 ;22.391 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 798 ;12.887 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 52 ;16.995 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 776 ; 0.078 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5367 ; 0.006 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1009 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN USED IF PRESENT IN REMARK 3 THE INPUT REMARK 4 REMARK 4 4LC1 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 26-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080440. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 11-NOV-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 23-ID-D REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.03262 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL MONOCHROMATOR REMARK 200 OPTICS : K-B PAIR OF BIOMORPH MIRRORS FOR REMARK 200 VERTICAL AND HORIZONTAL FOCUSING REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 60064 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.800 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 0.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.5 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.80 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.91 REMARK 200 COMPLETENESS FOR SHELL (%) : 97.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.20 REMARK 200 R MERGE FOR SHELL (I) : 0.39300 REMARK 200 R SYM FOR SHELL (I) : 0.40300 REMARK 200 FOR SHELL : 4.430 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: EPMR REMARK 200 STARTING MODEL: PDB ENTRY 2QM7 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.97 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20 % (W/V) PEG3350, AND 0.2 M SODIUM REMARK 280 SULFATE, PH 7.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 39.31150 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5070 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26400 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -45.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 ALA A 3 REMARK 465 THR A 96 REMARK 465 ARG A 97 REMARK 465 THR A 98 REMARK 465 GLY A 99 REMARK 465 GLY A 100 REMARK 465 SER A 101 REMARK 465 ILE A 102 REMARK 465 LEU A 103 REMARK 465 GLY A 104 REMARK 465 ASP A 105 REMARK 465 VAL A 158 REMARK 465 LEU A 330 REMARK 465 GLU A 331 REMARK 465 HIS A 332 REMARK 465 HIS A 333 REMARK 465 HIS A 334 REMARK 465 HIS A 335 REMARK 465 HIS A 336 REMARK 465 HIS A 337 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 ALA B 3 REMARK 465 THR B 96 REMARK 465 ARG B 97 REMARK 465 THR B 98 REMARK 465 GLY B 99 REMARK 465 GLY B 100 REMARK 465 SER B 101 REMARK 465 ILE B 102 REMARK 465 LEU B 103 REMARK 465 GLY B 104 REMARK 465 ASP B 105 REMARK 465 LYS B 106 REMARK 465 THR B 107 REMARK 465 GLY B 157 REMARK 465 VAL B 158 REMARK 465 GLY B 159 REMARK 465 ALA B 180 REMARK 465 GLY B 181 REMARK 465 ASP B 182 REMARK 465 LEU B 330 REMARK 465 GLU B 331 REMARK 465 HIS B 332 REMARK 465 HIS B 333 REMARK 465 HIS B 334 REMARK 465 HIS B 335 REMARK 465 HIS B 336 REMARK 465 HIS B 337 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 HE ARG B 307 O HOH B 599 1.58 REMARK 500 O HOH A 645 O HOH A 715 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 108 NE - CZ - NH1 ANGL. DEV. = -3.0 DEGREES REMARK 500 ARG B 137 NE - CZ - NH1 ANGL. DEV. = 3.8 DEGREES REMARK 500 ARG B 137 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 LYS B 246 CD - CE - NZ ANGL. DEV. = -14.3 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 THR A 107 -45.79 93.49 REMARK 500 GLN A 160 41.21 -82.72 REMARK 500 PRO A 178 45.51 -77.66 REMARK 500 PRO B 178 45.54 -78.85 REMARK 500 LYS B 202 34.75 71.87 REMARK 500 ASP B 205 138.72 -40.00 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 THR A 107 ARG A 108 147.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GDP B 401 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4JYB RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND WITH GMPPNP REMARK 900 RELATED ID: 4JYC RELATED DB: PDB REMARK 900 THE SAME PROTEIN IN ITS APO FORM REMARK 900 RELATED ID: 2QM7 RELATED DB: PDB REMARK 900 THE SAME PROTEIN BOUND WITH GDP REMARK 900 RELATED ID: 2QM8 RELATED DB: PDB REMARK 900 THE SAME PROTEIN WITH PI IN THE ACTIVE SITE DBREF 4LC1 A 1 329 UNP C5AP93 C5AP93_METEA 1 329 DBREF 4LC1 B 1 329 UNP C5AP93 C5AP93_METEA 1 329 SEQADV 4LC1 PHE A 192 UNP C5AP93 LEU 192 CONFLICT SEQADV 4LC1 LEU A 330 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 GLU A 331 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS A 332 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS A 333 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS A 334 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS A 335 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS A 336 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS A 337 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 PHE B 192 UNP C5AP93 LEU 192 CONFLICT SEQADV 4LC1 LEU B 330 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 GLU B 331 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS B 332 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS B 333 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS B 334 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS B 335 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS B 336 UNP C5AP93 EXPRESSION TAG SEQADV 4LC1 HIS B 337 UNP C5AP93 EXPRESSION TAG SEQRES 1 A 337 MET SER ALA THR LEU PRO ASP MET ASP THR LEU ARG GLU SEQRES 2 A 337 ARG LEU LEU ALA GLY ASP ARG ALA ALA LEU ALA ARG ALA SEQRES 3 A 337 ILE THR LEU ALA GLU SER ARG ARG ALA ASP HIS ARG ALA SEQRES 4 A 337 ALA VAL ARG ASP LEU ILE ASP ALA VAL LEU PRO GLN THR SEQRES 5 A 337 GLY ARG ALA ILE ARG VAL GLY ILE THR GLY VAL PRO GLY SEQRES 6 A 337 VAL GLY LYS SER THR THR ILE ASP ALA LEU GLY SER LEU SEQRES 7 A 337 LEU THR ALA ALA GLY HIS LYS VAL ALA VAL LEU ALA VAL SEQRES 8 A 337 ASP PRO SER SER THR ARG THR GLY GLY SER ILE LEU GLY SEQRES 9 A 337 ASP LYS THR ARG MET ALA ARG LEU ALA ILE ASP ARG ASN SEQRES 10 A 337 ALA PHE ILE ARG PRO SER PRO SER SER GLY THR LEU GLY SEQRES 11 A 337 GLY VAL ALA ALA LYS THR ARG GLU THR MET LEU LEU CYS SEQRES 12 A 337 GLU ALA ALA GLY PHE ASP VAL ILE LEU VAL GLU THR VAL SEQRES 13 A 337 GLY VAL GLY GLN SER GLU THR ALA VAL ALA ASP LEU THR SEQRES 14 A 337 ASP PHE PHE LEU VAL LEU MET LEU PRO GLY ALA GLY ASP SEQRES 15 A 337 GLU LEU GLN GLY ILE LYS LYS GLY ILE PHE GLU LEU ALA SEQRES 16 A 337 ASP MET ILE ALA VAL ASN LYS ALA ASP ASP GLY ASP GLY SEQRES 17 A 337 GLU ARG ARG ALA SER ALA ALA ALA SER GLU TYR ARG ALA SEQRES 18 A 337 ALA LEU HIS ILE LEU THR PRO PRO SER ALA THR TRP THR SEQRES 19 A 337 PRO PRO VAL VAL THR ILE SER GLY LEU HIS GLY LYS GLY SEQRES 20 A 337 LEU ASP SER LEU TRP SER ARG ILE GLU ASP HIS ARG SER SEQRES 21 A 337 LYS LEU THR ALA THR GLY GLU ILE ALA GLY LYS ARG ARG SEQRES 22 A 337 GLU GLN ASP VAL LYS TRP MET TRP ALA LEU VAL HIS GLU SEQRES 23 A 337 ARG LEU HIS GLN ARG LEU VAL GLY SER ALA GLU VAL ARG SEQRES 24 A 337 GLN ALA THR ALA GLU ALA GLU ARG ALA VAL ALA GLY GLY SEQRES 25 A 337 GLU HIS SER PRO ALA ALA GLY ALA ASP ALA ILE ALA THR SEQRES 26 A 337 LEU ILE GLY LEU LEU GLU HIS HIS HIS HIS HIS HIS SEQRES 1 B 337 MET SER ALA THR LEU PRO ASP MET ASP THR LEU ARG GLU SEQRES 2 B 337 ARG LEU LEU ALA GLY ASP ARG ALA ALA LEU ALA ARG ALA SEQRES 3 B 337 ILE THR LEU ALA GLU SER ARG ARG ALA ASP HIS ARG ALA SEQRES 4 B 337 ALA VAL ARG ASP LEU ILE ASP ALA VAL LEU PRO GLN THR SEQRES 5 B 337 GLY ARG ALA ILE ARG VAL GLY ILE THR GLY VAL PRO GLY SEQRES 6 B 337 VAL GLY LYS SER THR THR ILE ASP ALA LEU GLY SER LEU SEQRES 7 B 337 LEU THR ALA ALA GLY HIS LYS VAL ALA VAL LEU ALA VAL SEQRES 8 B 337 ASP PRO SER SER THR ARG THR GLY GLY SER ILE LEU GLY SEQRES 9 B 337 ASP LYS THR ARG MET ALA ARG LEU ALA ILE ASP ARG ASN SEQRES 10 B 337 ALA PHE ILE ARG PRO SER PRO SER SER GLY THR LEU GLY SEQRES 11 B 337 GLY VAL ALA ALA LYS THR ARG GLU THR MET LEU LEU CYS SEQRES 12 B 337 GLU ALA ALA GLY PHE ASP VAL ILE LEU VAL GLU THR VAL SEQRES 13 B 337 GLY VAL GLY GLN SER GLU THR ALA VAL ALA ASP LEU THR SEQRES 14 B 337 ASP PHE PHE LEU VAL LEU MET LEU PRO GLY ALA GLY ASP SEQRES 15 B 337 GLU LEU GLN GLY ILE LYS LYS GLY ILE PHE GLU LEU ALA SEQRES 16 B 337 ASP MET ILE ALA VAL ASN LYS ALA ASP ASP GLY ASP GLY SEQRES 17 B 337 GLU ARG ARG ALA SER ALA ALA ALA SER GLU TYR ARG ALA SEQRES 18 B 337 ALA LEU HIS ILE LEU THR PRO PRO SER ALA THR TRP THR SEQRES 19 B 337 PRO PRO VAL VAL THR ILE SER GLY LEU HIS GLY LYS GLY SEQRES 20 B 337 LEU ASP SER LEU TRP SER ARG ILE GLU ASP HIS ARG SER SEQRES 21 B 337 LYS LEU THR ALA THR GLY GLU ILE ALA GLY LYS ARG ARG SEQRES 22 B 337 GLU GLN ASP VAL LYS TRP MET TRP ALA LEU VAL HIS GLU SEQRES 23 B 337 ARG LEU HIS GLN ARG LEU VAL GLY SER ALA GLU VAL ARG SEQRES 24 B 337 GLN ALA THR ALA GLU ALA GLU ARG ALA VAL ALA GLY GLY SEQRES 25 B 337 GLU HIS SER PRO ALA ALA GLY ALA ASP ALA ILE ALA THR SEQRES 26 B 337 LEU ILE GLY LEU LEU GLU HIS HIS HIS HIS HIS HIS HET GDP A 401 40 HET GOL A 402 14 HET GDP B 401 40 HETNAM GDP GUANOSINE-5'-DIPHOSPHATE HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 GDP 2(C10 H15 N5 O11 P2) FORMUL 4 GOL C3 H8 O3 FORMUL 6 HOH *460(H2 O) HELIX 1 1 ASP A 7 ALA A 17 1 11 HELIX 2 2 ASP A 19 GLU A 31 1 13 HELIX 3 3 ARG A 34 LEU A 49 1 16 HELIX 4 4 PRO A 50 THR A 52 5 3 HELIX 5 5 GLY A 67 ALA A 82 1 16 HELIX 6 6 ARG A 111 ASP A 115 5 5 HELIX 7 7 THR A 128 ALA A 146 1 19 HELIX 8 8 GLN A 160 ASP A 167 1 8 HELIX 9 9 ILE A 191 ALA A 195 5 5 HELIX 10 10 GLY A 206 THR A 227 1 22 HELIX 11 11 GLY A 247 THR A 265 1 19 HELIX 12 12 GLY A 266 GLY A 294 1 29 HELIX 13 13 SER A 295 GLY A 311 1 17 HELIX 14 14 SER A 315 ILE A 327 1 13 HELIX 15 15 ASP B 7 ALA B 17 1 11 HELIX 16 16 ASP B 19 GLU B 31 1 13 HELIX 17 17 ARG B 34 LEU B 49 1 16 HELIX 18 18 PRO B 50 THR B 52 5 3 HELIX 19 19 GLY B 67 ALA B 82 1 16 HELIX 20 20 ARG B 111 ASP B 115 5 5 HELIX 21 21 THR B 128 ALA B 146 1 19 HELIX 22 22 SER B 161 ASP B 167 1 7 HELIX 23 23 ILE B 191 ALA B 195 5 5 HELIX 24 24 GLY B 206 THR B 227 1 22 HELIX 25 25 GLY B 247 THR B 265 1 19 HELIX 26 26 GLY B 266 GLY B 294 1 29 HELIX 27 27 SER B 295 GLY B 311 1 17 HELIX 28 28 SER B 315 ILE B 327 1 13 SHEET 1 A 7 ALA A 118 ARG A 121 0 SHEET 2 A 7 VAL A 86 VAL A 91 1 N VAL A 88 O ARG A 121 SHEET 3 A 7 VAL A 150 THR A 155 1 O LEU A 152 N ALA A 87 SHEET 4 A 7 ILE A 56 THR A 61 1 N ILE A 56 O ILE A 151 SHEET 5 A 7 PHE A 171 MET A 176 1 O LEU A 173 N GLY A 59 SHEET 6 A 7 MET A 197 VAL A 200 1 O ALA A 199 N VAL A 174 SHEET 7 A 7 VAL A 237 THR A 239 1 O VAL A 238 N VAL A 200 SHEET 1 B 7 ALA B 118 ARG B 121 0 SHEET 2 B 7 VAL B 86 VAL B 91 1 N VAL B 88 O PHE B 119 SHEET 3 B 7 VAL B 150 THR B 155 1 O LEU B 152 N ALA B 87 SHEET 4 B 7 ILE B 56 THR B 61 1 N VAL B 58 O ILE B 151 SHEET 5 B 7 PHE B 171 MET B 176 1 O LEU B 173 N GLY B 59 SHEET 6 B 7 MET B 197 VAL B 200 1 O ALA B 199 N VAL B 174 SHEET 7 B 7 VAL B 237 THR B 239 1 O VAL B 238 N VAL B 200 SITE 1 AC1 19 GLY A 65 VAL A 66 GLY A 67 LYS A 68 SITE 2 AC1 19 SER A 69 THR A 70 ASN A 201 LYS A 202 SITE 3 AC1 19 ASP A 204 SER A 241 GLY A 242 LEU A 243 SITE 4 AC1 19 HOH A 516 HOH A 650 HOH A 655 HOH A 660 SITE 5 AC1 19 HOH A 661 HOH A 713 HOH A 732 SITE 1 AC2 4 ALA A 308 HIS A 314 ALA A 318 HOH A 588 SITE 1 AC3 19 GLY B 65 VAL B 66 GLY B 67 LYS B 68 SITE 2 AC3 19 SER B 69 THR B 70 ASN B 201 LYS B 202 SITE 3 AC3 19 ASP B 204 SER B 241 GLY B 242 LEU B 243 SITE 4 AC3 19 HOH B 635 HOH B 645 HOH B 653 HOH B 654 SITE 5 AC3 19 HOH B 669 HOH B 672 HOH B 675 CRYST1 63.667 78.623 69.622 90.00 108.61 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015707 0.000000 0.005289 0.00000 SCALE2 0.000000 0.012719 0.000000 0.00000 SCALE3 0.000000 0.000000 0.015156 0.00000