HEADER TRANSFERASE 21-JUN-13 4LC3 TITLE X-RAY CRYSTAL STRUCTURE OF A PUTATIVE UDP-4-AMINO-4-DEOXY-L-ARABINOSE- TITLE 2 -OXOGLUTARATE AMINOTRANSFERASE FROM BURKHOLDERIA CENOCEPACIA COMPND MOL_ID: 1; COMPND 2 MOLECULE: PUTATIVE UDP-4-AMINO-4-DEOXY-L-ARABINOSE--OXOGLUTARATE COMPND 3 AMINOTRANSFERASE; COMPND 4 CHAIN: A, B; COMPND 5 EC: 2.6.1.87; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: BURKHOLDERIA CENOCEPACIA; SOURCE 3 ORGANISM_TAXID: 216591; SOURCE 4 STRAIN: J2315 / LMG 16656; SOURCE 5 GENE: ARNB, BCEJ2315_18950, BCAL1931; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS STRUCTURAL GENOMICS, NIAID, NATIONAL INSTITUTE OF ALLERGY AND KEYWDS 2 INFECTIOUS DISEASES, SEATTLE STRUCTURAL GENOMICS CENTER FOR KEYWDS 3 INFECTIOUS DISEASE, SSGCID, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR SEATTLE STRUCTURAL GENOMICS CENTER FOR INFECTIOUS DISEASE (SSGCID) REVDAT 2 20-SEP-23 4LC3 1 REMARK SEQADV REVDAT 1 21-AUG-13 4LC3 0 JRNL AUTH J.W.FAIRMAN,C.M.LUKACS,T.E.EDWARDS,D.LORIMER JRNL TITL X-RAY CRYSTAL STRUCTURE OF A PUTATIVE JRNL TITL 2 UDP-4-AMINO-4-DEOXY-L-ARABINOSE--OXOGLUTARATE JRNL TITL 3 AMINOTRANSFERASE FROM BURKHOLDERIA CENOCEPACIA JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.60 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.60 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.38 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 3 NUMBER OF REFLECTIONS : 117469 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.113 REMARK 3 R VALUE (WORKING SET) : 0.111 REMARK 3 FREE R VALUE : 0.148 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 5918 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.60 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.64 REMARK 3 REFLECTION IN BIN (WORKING SET) : 8087 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 95.61 REMARK 3 BIN R VALUE (WORKING SET) : 0.1500 REMARK 3 BIN FREE R VALUE SET COUNT : 432 REMARK 3 BIN FREE R VALUE : 0.2100 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 5774 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 74 REMARK 3 SOLVENT ATOMS : 1016 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 18.91 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 14.04 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.14000 REMARK 3 B22 (A**2) : 0.21000 REMARK 3 B33 (A**2) : -0.03000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : -0.31000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.069 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.061 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.034 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.124 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.977 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.966 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 6074 ; 0.011 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 5828 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 8263 ; 1.407 ; 1.960 REMARK 3 BOND ANGLES OTHERS (DEGREES): 13341 ; 0.811 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 786 ; 5.733 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 266 ;29.294 ;22.820 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 951 ;11.605 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 53 ;14.632 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 935 ; 0.160 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 6958 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 1443 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3054 ; 1.286 ; 0.994 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 3053 ; 1.277 ; 0.993 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 3822 ; 1.552 ; 1.498 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): 11902 ; 2.521 ; 3.000 REMARK 3 SPHERICITY; FREE ATOMS (A**2): 232 ;33.609 ; 5.000 REMARK 3 SPHERICITY; BONDED ATOMS (A**2): 12554 ; 9.723 ; 5.000 REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: REMARK 3 HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS REMARK 3 U VALUES : REFINED INDIVIDUALLY REMARK 4 REMARK 4 4LC3 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080442. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 05-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 21-ID-G REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.9786 REMARK 200 MONOCHROMATOR : DIAMOND(111) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : NULL REMARK 200 DATA SCALING SOFTWARE : XSCALE REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 117470 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.600 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 97.2 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : 0.06300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 15.6200 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.60 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.64 REMARK 200 COMPLETENESS FOR SHELL (%) : 95.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.37100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 3.580 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 1MDO REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 54.42 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.70 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20% PEG6000, 100 MM SODIUM CITRATE REMARK 280 TRIBASIC, PH 5.0, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 289K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 1 2 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y,-Z REMARK 290 3555 X+1/2,Y+1/2,Z REMARK 290 4555 -X+1/2,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 3 1.000000 0.000000 0.000000 95.46500 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 29.45500 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 95.46500 REMARK 290 SMTRY2 4 0.000000 1.000000 0.000000 29.45500 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 8640 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 26240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -10.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A -7 REMARK 465 ALA A -6 REMARK 465 HIS A -5 REMARK 465 HIS A -4 REMARK 465 HIS A -3 REMARK 465 HIS A -2 REMARK 465 HIS A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 SER A 2 REMARK 465 GLN A 3 REMARK 465 THR A 4 REMARK 465 THR A 5 REMARK 465 MET B -7 REMARK 465 ALA B -6 REMARK 465 HIS B -5 REMARK 465 HIS B -4 REMARK 465 HIS B -3 REMARK 465 HIS B -2 REMARK 465 HIS B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 SER B 2 REMARK 465 GLN B 3 REMARK 465 THR B 4 REMARK 465 THR B 5 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 149 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 339 CG CD CE NZ REMARK 470 GLU A 364 CG CD OE1 OE2 REMARK 470 GLU B 19 CG CD OE1 OE2 REMARK 470 LYS B 152 CG CD CE NZ REMARK 470 LYS B 275 CG CD CE NZ REMARK 470 ARG B 301 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 315 CG CD OE1 OE2 REMARK 470 LYS B 339 CG CD CE NZ REMARK 470 GLU B 364 CG CD OE1 OE2 REMARK 470 GLU B 379 CG CD OE1 OE2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OE2 GLU A 48 O HOH A 826 2.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 864 O HOH A 864 2655 1.95 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 ARG B 262 NE - CZ - NH2 ANGL. DEV. = -3.2 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 177 -108.38 -93.92 REMARK 500 ILE A 192 -68.95 81.25 REMARK 500 ASP B 177 -107.13 -94.71 REMARK 500 ILE B 192 -67.78 82.63 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO A 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CIT B 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC9 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 405 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE EDO B 406 REMARK 800 REMARK 800 SITE_IDENTIFIER: BC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL B 407 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: SSGCID-BUCEA.17333.A RELATED DB: TARGETTRACK DBREF 4LC3 A 1 383 UNP B4EB17 B4EB17_BURCJ 1 383 DBREF 4LC3 B 1 383 UNP B4EB17 B4EB17_BURCJ 1 383 SEQADV 4LC3 MET A -7 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 ALA A -6 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS A -5 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS A -4 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS A -3 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS A -2 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS A -1 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS A 0 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 MET B -7 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 ALA B -6 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS B -5 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS B -4 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS B -3 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS B -2 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS B -1 UNP B4EB17 EXPRESSION TAG SEQADV 4LC3 HIS B 0 UNP B4EB17 EXPRESSION TAG SEQRES 1 A 391 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLN THR THR SEQRES 2 A 391 ALA PRO PHE LEU PRO PHE THR ARG PRO GLU ILE ASP GLU SEQRES 3 A 391 GLU THR ILE GLN GLY VAL VAL GLU VAL LEU ARG SER GLY SEQRES 4 A 391 TRP ILE THR THR GLY PRO GLN CYS GLN LYS PHE GLU ALA SEQRES 5 A 391 ALA LEU SER GLU TYR CYS GLY GLY ARG PRO VAL ARG VAL SEQRES 6 A 391 PHE ASN SER GLY THR CYS THR LEU GLU ILE GLY LEU ARG SEQRES 7 A 391 ILE ALA GLY VAL GLY PRO GLY ASP GLU VAL ILE THR THR SEQRES 8 A 391 PRO ALA SER TRP VAL SER THR SER ASN VAL ILE ILE GLU SEQRES 9 A 391 THR GLY ALA THR PRO VAL PHE ALA ASP ILE ASP PRO VAL SEQRES 10 A 391 THR ARG ASN ILE ASP LEU ASP LYS LEU GLU GLN ALA ILE SEQRES 11 A 391 THR PRO ARG THR LYS ALA ILE ILE PRO VAL PHE LEU SER SEQRES 12 A 391 GLY LEU PRO VAL ASP MET ASP ARG LEU TYR ALA ILE ALA SEQRES 13 A 391 ARG ALA HIS LYS LEU ARG VAL ILE GLU ASP ALA ALA GLN SEQRES 14 A 391 ALA PHE GLY SER THR TRP HIS GLY LYS ARG ILE GLY ALA SEQRES 15 A 391 ILE GLY ASP LEU VAL SER PHE SER PHE HIS ALA ASN LYS SEQRES 16 A 391 ASN LEU THR THR ILE GLU GLY GLY ALA LEU VAL LEU ASN SEQRES 17 A 391 ASN GLU ASP GLU ALA VAL LEU ALA GLN LYS TYR ARG LEU SEQRES 18 A 391 GLN GLY ILE THR ARG THR GLY PHE ASP GLY MET ASP CYS SEQRES 19 A 391 ASP VAL LEU GLY GLY LYS TYR ASN LEU THR ASP VAL ALA SEQRES 20 A 391 ALA ARG VAL GLY LEU GLY GLN LEU PRO HIS LEU GLU ARG SEQRES 21 A 391 PHE THR ALA GLN ARG ARG ALA LEU ALA ARG ALA TYR PHE SEQRES 22 A 391 ALA ALA PHE ASP GLY GLY ALA ALA ALA LYS LEU GLY VAL SEQRES 23 A 391 GLY LEU PRO VAL ALA GLU PHE GLU ASN GLY ASN TRP HIS SEQRES 24 A 391 MET PHE LEU VAL THR LEU PRO LEU GLU ARG LEU THR ILE SEQRES 25 A 391 THR ARG ALA GLU PHE MET ALA GLN MET LYS GLU ARG GLY SEQRES 26 A 391 ILE GLY THR GLY ILE HIS TYR PRO ALA ILE HIS LEU PHE SEQRES 27 A 391 THR LEU TYR ARG ALA ARG GLY PHE LYS GLU GLY MET PHE SEQRES 28 A 391 PRO HIS ALA GLU ARG TYR GLY ALA SER THR VAL THR LEU SEQRES 29 A 391 PRO LEU PHE THR GLN MET THR GLU GLY ASP VAL ARG ARG SEQRES 30 A 391 VAL VAL ASP ALA VAL ASN GLN ILE CYS GLU GLN TYR GLY SEQRES 31 A 391 LYS SEQRES 1 B 391 MET ALA HIS HIS HIS HIS HIS HIS MET SER GLN THR THR SEQRES 2 B 391 ALA PRO PHE LEU PRO PHE THR ARG PRO GLU ILE ASP GLU SEQRES 3 B 391 GLU THR ILE GLN GLY VAL VAL GLU VAL LEU ARG SER GLY SEQRES 4 B 391 TRP ILE THR THR GLY PRO GLN CYS GLN LYS PHE GLU ALA SEQRES 5 B 391 ALA LEU SER GLU TYR CYS GLY GLY ARG PRO VAL ARG VAL SEQRES 6 B 391 PHE ASN SER GLY THR CYS THR LEU GLU ILE GLY LEU ARG SEQRES 7 B 391 ILE ALA GLY VAL GLY PRO GLY ASP GLU VAL ILE THR THR SEQRES 8 B 391 PRO ALA SER TRP VAL SER THR SER ASN VAL ILE ILE GLU SEQRES 9 B 391 THR GLY ALA THR PRO VAL PHE ALA ASP ILE ASP PRO VAL SEQRES 10 B 391 THR ARG ASN ILE ASP LEU ASP LYS LEU GLU GLN ALA ILE SEQRES 11 B 391 THR PRO ARG THR LYS ALA ILE ILE PRO VAL PHE LEU SER SEQRES 12 B 391 GLY LEU PRO VAL ASP MET ASP ARG LEU TYR ALA ILE ALA SEQRES 13 B 391 ARG ALA HIS LYS LEU ARG VAL ILE GLU ASP ALA ALA GLN SEQRES 14 B 391 ALA PHE GLY SER THR TRP HIS GLY LYS ARG ILE GLY ALA SEQRES 15 B 391 ILE GLY ASP LEU VAL SER PHE SER PHE HIS ALA ASN LYS SEQRES 16 B 391 ASN LEU THR THR ILE GLU GLY GLY ALA LEU VAL LEU ASN SEQRES 17 B 391 ASN GLU ASP GLU ALA VAL LEU ALA GLN LYS TYR ARG LEU SEQRES 18 B 391 GLN GLY ILE THR ARG THR GLY PHE ASP GLY MET ASP CYS SEQRES 19 B 391 ASP VAL LEU GLY GLY LYS TYR ASN LEU THR ASP VAL ALA SEQRES 20 B 391 ALA ARG VAL GLY LEU GLY GLN LEU PRO HIS LEU GLU ARG SEQRES 21 B 391 PHE THR ALA GLN ARG ARG ALA LEU ALA ARG ALA TYR PHE SEQRES 22 B 391 ALA ALA PHE ASP GLY GLY ALA ALA ALA LYS LEU GLY VAL SEQRES 23 B 391 GLY LEU PRO VAL ALA GLU PHE GLU ASN GLY ASN TRP HIS SEQRES 24 B 391 MET PHE LEU VAL THR LEU PRO LEU GLU ARG LEU THR ILE SEQRES 25 B 391 THR ARG ALA GLU PHE MET ALA GLN MET LYS GLU ARG GLY SEQRES 26 B 391 ILE GLY THR GLY ILE HIS TYR PRO ALA ILE HIS LEU PHE SEQRES 27 B 391 THR LEU TYR ARG ALA ARG GLY PHE LYS GLU GLY MET PHE SEQRES 28 B 391 PRO HIS ALA GLU ARG TYR GLY ALA SER THR VAL THR LEU SEQRES 29 B 391 PRO LEU PHE THR GLN MET THR GLU GLY ASP VAL ARG ARG SEQRES 30 B 391 VAL VAL ASP ALA VAL ASN GLN ILE CYS GLU GLN TYR GLY SEQRES 31 B 391 LYS HET CIT A 401 13 HET EDO A 402 4 HET EDO A 403 4 HET EDO A 404 4 HET EDO A 405 4 HET GOL A 406 6 HET CIT B 401 13 HET EDO B 402 4 HET EDO B 403 4 HET EDO B 404 4 HET EDO B 405 4 HET EDO B 406 4 HET GOL B 407 6 HETNAM CIT CITRIC ACID HETNAM EDO 1,2-ETHANEDIOL HETNAM GOL GLYCEROL HETSYN EDO ETHYLENE GLYCOL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 3 CIT 2(C6 H8 O7) FORMUL 4 EDO 9(C2 H6 O2) FORMUL 8 GOL 2(C3 H8 O3) FORMUL 16 HOH *1016(H2 O) HELIX 1 1 ASP A 17 GLY A 31 1 15 HELIX 2 2 GLY A 36 CYS A 50 1 15 HELIX 3 3 THR A 62 ALA A 72 1 11 HELIX 4 4 VAL A 88 THR A 97 1 10 HELIX 5 5 ASP A 114 ALA A 121 1 8 HELIX 6 6 PHE A 133 LEU A 137 5 5 HELIX 7 7 ASP A 140 HIS A 151 1 12 HELIX 8 8 ASN A 201 LEU A 213 1 13 HELIX 9 9 THR A 236 LEU A 247 1 12 HELIX 10 10 HIS A 249 ASP A 269 1 21 HELIX 11 11 GLY A 271 GLY A 277 1 7 HELIX 12 12 PRO A 298 LEU A 302 5 5 HELIX 13 13 THR A 305 ARG A 316 1 12 HELIX 14 14 ALA A 326 LEU A 329 5 4 HELIX 15 15 PHE A 330 ALA A 335 1 6 HELIX 16 16 PHE A 343 SER A 352 1 10 HELIX 17 17 THR A 363 GLY A 382 1 20 HELIX 18 18 ASP B 17 GLY B 31 1 15 HELIX 19 19 GLY B 36 CYS B 50 1 15 HELIX 20 20 THR B 62 ALA B 72 1 11 HELIX 21 21 VAL B 88 THR B 97 1 10 HELIX 22 22 ASP B 114 ALA B 121 1 8 HELIX 23 23 PHE B 133 LEU B 137 5 5 HELIX 24 24 ASP B 140 HIS B 151 1 12 HELIX 25 25 ASN B 201 LEU B 213 1 13 HELIX 26 26 THR B 236 LEU B 247 1 12 HELIX 27 27 HIS B 249 ASP B 269 1 21 HELIX 28 28 GLY B 271 GLY B 277 1 7 HELIX 29 29 PRO B 298 LEU B 302 5 5 HELIX 30 30 THR B 305 ARG B 316 1 12 HELIX 31 31 ALA B 326 LEU B 329 5 4 HELIX 32 32 PHE B 330 ALA B 335 1 6 HELIX 33 33 PHE B 343 SER B 352 1 10 HELIX 34 34 THR B 363 GLY B 382 1 20 SHEET 1 A 7 VAL A 55 PHE A 58 0 SHEET 2 A 7 GLY A 195 VAL A 198 -1 O LEU A 197 N ARG A 56 SHEET 3 A 7 LEU A 178 SER A 182 -1 N VAL A 179 O VAL A 198 SHEET 4 A 7 ARG A 154 ASP A 158 1 N GLU A 157 O LEU A 178 SHEET 5 A 7 THR A 126 ILE A 129 1 N ILE A 129 O ILE A 156 SHEET 6 A 7 GLU A 79 THR A 82 1 N GLU A 79 O LYS A 127 SHEET 7 A 7 THR A 100 PHE A 103 1 O VAL A 102 N THR A 82 SHEET 1 B 2 THR A 166 TRP A 167 0 SHEET 2 B 2 LYS A 170 ARG A 171 -1 O LYS A 170 N TRP A 167 SHEET 1 C 2 ILE A 216 THR A 219 0 SHEET 2 C 2 GLY A 223 CYS A 226 -1 O ASP A 225 N THR A 217 SHEET 1 D 2 PHE A 293 THR A 296 0 SHEET 2 D 2 THR A 353 LEU A 356 -1 O VAL A 354 N VAL A 295 SHEET 1 E 7 VAL B 55 PHE B 58 0 SHEET 2 E 7 GLY B 195 VAL B 198 -1 O LEU B 197 N ARG B 56 SHEET 3 E 7 LEU B 178 SER B 182 -1 N PHE B 181 O ALA B 196 SHEET 4 E 7 ARG B 154 ASP B 158 1 N GLU B 157 O LEU B 178 SHEET 5 E 7 THR B 126 ILE B 129 1 N ILE B 129 O ILE B 156 SHEET 6 E 7 GLU B 79 THR B 82 1 N GLU B 79 O LYS B 127 SHEET 7 E 7 THR B 100 PHE B 103 1 O VAL B 102 N VAL B 80 SHEET 1 F 2 THR B 166 TRP B 167 0 SHEET 2 F 2 LYS B 170 ARG B 171 -1 O LYS B 170 N TRP B 167 SHEET 1 G 2 ILE B 216 THR B 219 0 SHEET 2 G 2 GLY B 223 CYS B 226 -1 O ASP B 225 N THR B 217 SHEET 1 H 2 PHE B 293 THR B 296 0 SHEET 2 H 2 THR B 353 LEU B 356 -1 O VAL B 354 N VAL B 295 CISPEP 1 HIS A 323 TYR A 324 0 9.15 CISPEP 2 HIS B 323 TYR B 324 0 5.48 SITE 1 AC1 15 SER A 60 GLY A 61 THR A 62 TRP A 87 SITE 2 AC1 15 SER A 182 HIS A 184 LYS A 187 EDO A 403 SITE 3 AC1 15 GOL A 406 HOH A 526 HOH A 528 HOH A 743 SITE 4 AC1 15 HOH A 756 LEU B 213 LYS B 232 SITE 1 AC2 7 GLY A 231 LYS A 232 TYR A 233 HOH A 703 SITE 2 AC2 7 HOH A1040 THR B 62 GLU B 66 SITE 1 AC3 8 SER A 86 TRP A 87 THR A 90 ASP A 158 SITE 2 AC3 8 ALA A 160 GLN A 161 TYR A 324 CIT A 401 SITE 1 AC4 4 GLU A 119 ARG A 143 ILE A 147 ALA A 150 SITE 1 AC5 6 ARG A 13 PHE A 359 GLN A 361 ASP A 366 SITE 2 AC5 6 HOH A 769 HOH A1007 SITE 1 AC6 6 HIS A 323 TYR A 324 CIT A 401 HOH A 911 SITE 2 AC6 6 HOH A 959 ARG B 218 SITE 1 AC7 16 LEU A 213 LYS A 232 SER B 60 GLY B 61 SITE 2 AC7 16 THR B 62 TRP B 87 ALA B 160 SER B 182 SITE 3 AC7 16 HIS B 184 LYS B 187 EDO B 405 GOL B 407 SITE 4 AC7 16 HOH B 519 HOH B 521 HOH B 677 HOH B 796 SITE 1 AC8 6 LEU A 28 GLY A 31 PRO B 14 GLU B 15 SITE 2 AC8 6 ILE B 16 HOH B 859 SITE 1 AC9 9 THR A 62 GLU A 66 VAL A 93 GLY B 231 SITE 2 AC9 9 LYS B 232 TYR B 233 HOH B 666 HOH B 729 SITE 3 AC9 9 HOH B 975 SITE 1 BC1 4 GLU B 119 ARG B 143 ARG B 262 HOH B 672 SITE 1 BC2 8 SER B 86 TRP B 87 THR B 90 ASP B 158 SITE 2 BC2 8 ALA B 160 GLN B 161 TYR B 324 CIT B 401 SITE 1 BC3 5 ARG B 336 GLY B 337 PHE B 338 HOH B 816 SITE 2 BC3 5 HOH B 831 SITE 1 BC4 5 ARG A 218 HIS B 323 TYR B 324 CIT B 401 SITE 2 BC4 5 HOH B 717 CRYST1 190.930 58.910 83.080 90.00 97.39 90.00 C 1 2 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.005238 0.000000 0.000680 0.00000 SCALE2 0.000000 0.016975 0.000000 0.00000 SCALE3 0.000000 0.000000 0.012138 0.00000