HEADER METAL BINDING PROTEIN 23-JUN-13 4LCV TITLE CRYSTAL STRUCTURE OF DOC2B C2A DOMAIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: DOUBLE C2-LIKE DOMAIN-CONTAINING PROTEIN BETA; COMPND 3 CHAIN: A, B, C, D; COMPND 4 FRAGMENT: C2A DOMAIN (UNP RESIDUES 125-255); COMPND 5 SYNONYM: DOC2-BETA; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: RATTUS NORVEGICUS; SOURCE 3 ORGANISM_COMMON: BROWN RAT,RAT,RATS; SOURCE 4 ORGANISM_TAXID: 10116; SOURCE 5 GENE: DOC2B; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS C2, CALCIUM BINDING PROTEIN, METAL BINDING PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR M.GILADI,L.ALMAGOR,J.A.HIRSCH REVDAT 2 13-NOV-13 4LCV 1 JRNL REVDAT 1 11-SEP-13 4LCV 0 JRNL AUTH M.GILADI,L.MICHAELI,L.ALMAGOR,D.BAR-ON,T.BUKI,U.ASHERY, JRNL AUTH 2 D.KHANANSHVILI,J.A.HIRSCH JRNL TITL THE C2B DOMAIN IS THE PRIMARY CA(2+) SENSOR IN DOC2B: A JRNL TITL 2 STRUCTURAL AND FUNCTIONAL ANALYSIS. JRNL REF J.MOL.BIOL. V. 425 4629 2013 JRNL REFN ISSN 0022-2836 JRNL PMID 23994332 JRNL DOI 10.1016/J.JMB.2013.08.017 REMARK 2 REMARK 2 RESOLUTION. 2.00 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.00 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 47.58 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 94.3 REMARK 3 NUMBER OF REFLECTIONS : 34576 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.189 REMARK 3 R VALUE (WORKING SET) : 0.187 REMARK 3 FREE R VALUE : 0.232 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.990 REMARK 3 FREE R VALUE TEST SET COUNT : 1727 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 47.5889 - 4.5864 1.00 2947 154 0.1812 0.1828 REMARK 3 2 4.5864 - 3.6408 1.00 2904 153 0.1501 0.2098 REMARK 3 3 3.6408 - 3.1807 0.99 2903 152 0.1648 0.2191 REMARK 3 4 3.1807 - 2.8899 0.99 2866 151 0.1970 0.2566 REMARK 3 5 2.8899 - 2.6828 0.99 2870 152 0.2030 0.2494 REMARK 3 6 2.6828 - 2.5246 0.99 2864 151 0.1989 0.2273 REMARK 3 7 2.5246 - 2.3982 0.99 2864 151 0.2127 0.2912 REMARK 3 8 2.3982 - 2.2938 0.99 2849 150 0.2143 0.2553 REMARK 3 9 2.2938 - 2.2055 0.96 2790 145 0.2149 0.2943 REMARK 3 10 2.2055 - 2.1294 0.90 2600 136 0.2243 0.2582 REMARK 3 11 2.1294 - 2.0628 0.82 2340 125 0.2318 0.2895 REMARK 3 12 2.0628 - 2.0000 0.70 2052 107 0.2473 0.2662 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 24.810 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.012 4063 REMARK 3 ANGLE : 1.047 5528 REMARK 3 CHIRALITY : 0.062 645 REMARK 3 PLANARITY : 0.009 699 REMARK 3 DIHEDRAL : 13.995 1485 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 23 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN A AND (RESID 126:151 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5367 -8.2415 -13.4152 REMARK 3 T TENSOR REMARK 3 T11: 0.1807 T22: 0.1392 REMARK 3 T33: 0.1679 T12: 0.0724 REMARK 3 T13: -0.0111 T23: 0.0071 REMARK 3 L TENSOR REMARK 3 L11: 8.7583 L22: 3.9016 REMARK 3 L33: 1.3969 L12: 5.3409 REMARK 3 L13: 0.0698 L23: 0.0672 REMARK 3 S TENSOR REMARK 3 S11: -0.1011 S12: 0.3125 S13: 0.4135 REMARK 3 S21: -0.0447 S22: 0.1302 S23: 0.1796 REMARK 3 S31: -0.1327 S32: 0.0039 S33: -0.0611 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN A AND (RESID 152:181 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.2347 -6.5222 -5.5799 REMARK 3 T TENSOR REMARK 3 T11: 0.2485 T22: 0.2667 REMARK 3 T33: 0.2313 T12: 0.0501 REMARK 3 T13: -0.1103 T23: -0.0537 REMARK 3 L TENSOR REMARK 3 L11: 5.7171 L22: 2.9813 REMARK 3 L33: 2.9013 L12: -3.4468 REMARK 3 L13: -0.5178 L23: 1.8409 REMARK 3 S TENSOR REMARK 3 S11: 0.0697 S12: -0.5368 S13: 0.0158 REMARK 3 S21: 0.2347 S22: -0.0661 S23: -0.0015 REMARK 3 S31: 0.2921 S32: 0.5640 S33: 0.1443 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN A AND (RESID 182:210 ) REMARK 3 ORIGIN FOR THE GROUP (A): -7.9421 -9.6647 -11.2726 REMARK 3 T TENSOR REMARK 3 T11: 0.2083 T22: 0.1895 REMARK 3 T33: 0.1679 T12: 0.0806 REMARK 3 T13: -0.0010 T23: 0.0243 REMARK 3 L TENSOR REMARK 3 L11: 5.1383 L22: 1.6414 REMARK 3 L33: 1.6298 L12: 1.2928 REMARK 3 L13: -0.1826 L23: -0.3099 REMARK 3 S TENSOR REMARK 3 S11: 0.0892 S12: 0.5716 S13: -0.1579 REMARK 3 S21: -0.1760 S22: -0.0998 S23: -0.2604 REMARK 3 S31: 0.0060 S32: 0.1081 S33: 0.0291 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN A AND (RESID 211:225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 3.3608 -4.2319 -5.2762 REMARK 3 T TENSOR REMARK 3 T11: 0.2754 T22: 0.4726 REMARK 3 T33: 0.3700 T12: 0.0641 REMARK 3 T13: -0.0745 T23: -0.0162 REMARK 3 L TENSOR REMARK 3 L11: 2.0345 L22: 1.3466 REMARK 3 L33: 0.0746 L12: -1.0102 REMARK 3 L13: -0.4089 L23: -0.0276 REMARK 3 S TENSOR REMARK 3 S11: 0.0050 S12: -0.7125 S13: 0.5508 REMARK 3 S21: 0.2613 S22: 0.0416 S23: -0.5314 REMARK 3 S31: 0.1521 S32: 0.7444 S33: -0.0920 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN A AND (RESID 226:253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -13.5728 -1.4902 -8.8028 REMARK 3 T TENSOR REMARK 3 T11: 0.1968 T22: 0.1593 REMARK 3 T33: 0.2493 T12: 0.0567 REMARK 3 T13: -0.0399 T23: -0.0077 REMARK 3 L TENSOR REMARK 3 L11: 3.2597 L22: 5.1345 REMARK 3 L33: 1.9305 L12: 1.4847 REMARK 3 L13: -1.7732 L23: 0.0816 REMARK 3 S TENSOR REMARK 3 S11: -0.0432 S12: -0.3761 S13: 0.7497 REMARK 3 S21: 0.0291 S22: -0.1719 S23: 0.0427 REMARK 3 S31: -0.1240 S32: 0.0669 S33: 0.2570 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN B AND (RESID 124:141 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.8636 7.2900 -18.3477 REMARK 3 T TENSOR REMARK 3 T11: 0.1020 T22: 0.1558 REMARK 3 T33: 0.1771 T12: 0.0224 REMARK 3 T13: 0.0231 T23: 0.0289 REMARK 3 L TENSOR REMARK 3 L11: 2.3463 L22: 2.6947 REMARK 3 L33: 6.4706 L12: -0.4722 REMARK 3 L13: 1.9024 L23: 0.5779 REMARK 3 S TENSOR REMARK 3 S11: 0.3201 S12: 0.1106 S13: -0.3303 REMARK 3 S21: 0.2112 S22: 0.0412 S23: -0.5757 REMARK 3 S31: 0.3492 S32: 0.3591 S33: -0.3482 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN B AND (RESID 142:203 ) REMARK 3 ORIGIN FOR THE GROUP (A): -23.9056 17.2109 -14.4804 REMARK 3 T TENSOR REMARK 3 T11: 0.2253 T22: 0.2196 REMARK 3 T33: 0.2094 T12: 0.0684 REMARK 3 T13: -0.0270 T23: -0.0175 REMARK 3 L TENSOR REMARK 3 L11: 1.2162 L22: 2.7592 REMARK 3 L33: 4.2488 L12: 1.5146 REMARK 3 L13: 1.3350 L23: 3.4148 REMARK 3 S TENSOR REMARK 3 S11: -0.0062 S12: -0.1043 S13: 0.1718 REMARK 3 S21: -0.3165 S22: -0.2595 S23: 0.1534 REMARK 3 S31: -0.4708 S32: -0.4658 S33: 0.2502 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN B AND (RESID 204:218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -20.4830 11.6972 -27.5577 REMARK 3 T TENSOR REMARK 3 T11: 0.4357 T22: 0.2397 REMARK 3 T33: 0.1873 T12: 0.0201 REMARK 3 T13: 0.0353 T23: 0.0947 REMARK 3 L TENSOR REMARK 3 L11: 2.6174 L22: 8.4210 REMARK 3 L33: 2.2412 L12: 0.6247 REMARK 3 L13: 0.9803 L23: 7.4547 REMARK 3 S TENSOR REMARK 3 S11: -0.0421 S12: 0.2441 S13: 0.0752 REMARK 3 S21: -0.4065 S22: 0.0841 S23: 0.3270 REMARK 3 S31: -0.6477 S32: 0.1449 S33: -0.1977 REMARK 3 TLS GROUP : 9 REMARK 3 SELECTION: CHAIN B AND (RESID 219:237 ) REMARK 3 ORIGIN FOR THE GROUP (A): -17.8792 21.8950 -16.7563 REMARK 3 T TENSOR REMARK 3 T11: 0.4708 T22: 0.2028 REMARK 3 T33: 0.2931 T12: 0.0556 REMARK 3 T13: 0.0731 T23: 0.0690 REMARK 3 L TENSOR REMARK 3 L11: 5.1023 L22: 2.1668 REMARK 3 L33: 7.2439 L12: 0.6540 REMARK 3 L13: 0.7158 L23: 6.7881 REMARK 3 S TENSOR REMARK 3 S11: 0.1387 S12: -0.1285 S13: 0.8986 REMARK 3 S21: -0.8075 S22: 0.2161 S23: -0.3666 REMARK 3 S31: -0.9319 S32: 0.0322 S33: -0.3869 REMARK 3 TLS GROUP : 10 REMARK 3 SELECTION: CHAIN B AND (RESID 238:254 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.6778 6.4644 -18.6765 REMARK 3 T TENSOR REMARK 3 T11: 0.1960 T22: 0.1697 REMARK 3 T33: 0.2736 T12: 0.0900 REMARK 3 T13: -0.0092 T23: 0.0431 REMARK 3 L TENSOR REMARK 3 L11: 7.3659 L22: 7.5963 REMARK 3 L33: 9.2278 L12: 3.0438 REMARK 3 L13: 4.3128 L23: 4.4476 REMARK 3 S TENSOR REMARK 3 S11: 0.3573 S12: 0.1913 S13: -0.1633 REMARK 3 S21: -0.2450 S22: 0.0208 S23: -0.5708 REMARK 3 S31: 0.3481 S32: 0.3405 S33: -0.4367 REMARK 3 TLS GROUP : 11 REMARK 3 SELECTION: CHAIN C AND (RESID 125:171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.3403 16.7947 14.1975 REMARK 3 T TENSOR REMARK 3 T11: 0.1654 T22: 0.1946 REMARK 3 T33: 0.2905 T12: -0.0337 REMARK 3 T13: 0.0225 T23: 0.0741 REMARK 3 L TENSOR REMARK 3 L11: 3.5185 L22: 0.8013 REMARK 3 L33: 1.9533 L12: 0.8163 REMARK 3 L13: 0.6152 L23: -0.3511 REMARK 3 S TENSOR REMARK 3 S11: -0.1141 S12: -0.1794 S13: -0.4822 REMARK 3 S21: -0.0903 S22: -0.0004 S23: -0.2869 REMARK 3 S31: 0.1289 S32: 0.2745 S33: 0.0939 REMARK 3 TLS GROUP : 12 REMARK 3 SELECTION: CHAIN C AND (RESID 172:203 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2429 21.9058 12.2118 REMARK 3 T TENSOR REMARK 3 T11: 0.1773 T22: 0.1504 REMARK 3 T33: 0.2785 T12: -0.0544 REMARK 3 T13: 0.0009 T23: 0.0500 REMARK 3 L TENSOR REMARK 3 L11: 8.3082 L22: 4.5156 REMARK 3 L33: 3.0495 L12: -2.3118 REMARK 3 L13: 2.5590 L23: -1.6762 REMARK 3 S TENSOR REMARK 3 S11: 0.1104 S12: 0.1321 S13: -0.0231 REMARK 3 S21: -0.1375 S22: -0.2515 S23: -0.5615 REMARK 3 S31: -0.0134 S32: 0.3764 S33: 0.1998 REMARK 3 TLS GROUP : 13 REMARK 3 SELECTION: CHAIN C AND (RESID 204:218 ) REMARK 3 ORIGIN FOR THE GROUP (A): -3.7581 18.3899 4.6386 REMARK 3 T TENSOR REMARK 3 T11: 0.1509 T22: 0.2202 REMARK 3 T33: 0.3154 T12: -0.0536 REMARK 3 T13: -0.0364 T23: 0.0183 REMARK 3 L TENSOR REMARK 3 L11: 2.1003 L22: 8.7015 REMARK 3 L33: 5.6807 L12: -9.3872 REMARK 3 L13: 7.9450 L23: -6.1724 REMARK 3 S TENSOR REMARK 3 S11: 0.4780 S12: 0.9104 S13: -0.0874 REMARK 3 S21: -0.3358 S22: -0.5032 S23: -0.1494 REMARK 3 S31: 0.3142 S32: 0.4367 S33: -0.0377 REMARK 3 TLS GROUP : 14 REMARK 3 SELECTION: CHAIN C AND (RESID 219:225 ) REMARK 3 ORIGIN FOR THE GROUP (A): 23.3881 16.5329 7.6642 REMARK 3 T TENSOR REMARK 3 T11: 0.5572 T22: 0.4601 REMARK 3 T33: 0.7041 T12: -0.2483 REMARK 3 T13: 0.0106 T23: 0.0088 REMARK 3 L TENSOR REMARK 3 L11: 9.0419 L22: 3.7893 REMARK 3 L33: 7.7922 L12: 2.4595 REMARK 3 L13: -3.5381 L23: -5.4474 REMARK 3 S TENSOR REMARK 3 S11: 0.4380 S12: 0.1322 S13: -0.7050 REMARK 3 S21: 0.2357 S22: 0.4385 S23: 1.4583 REMARK 3 S31: 0.5490 S32: -0.4717 S33: -0.7468 REMARK 3 TLS GROUP : 15 REMARK 3 SELECTION: CHAIN C AND (RESID 226:237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.1697 11.5864 7.7122 REMARK 3 T TENSOR REMARK 3 T11: 0.2577 T22: 0.1733 REMARK 3 T33: 0.4071 T12: -0.0236 REMARK 3 T13: 0.0001 T23: 0.0305 REMARK 3 L TENSOR REMARK 3 L11: 2.0214 L22: 8.1791 REMARK 3 L33: 2.6649 L12: -8.8654 REMARK 3 L13: 1.2052 L23: -0.9321 REMARK 3 S TENSOR REMARK 3 S11: -0.1186 S12: 0.7756 S13: -0.9706 REMARK 3 S21: 0.2105 S22: -0.2109 S23: -0.0480 REMARK 3 S31: 0.3536 S32: 0.2269 S33: 0.2400 REMARK 3 TLS GROUP : 16 REMARK 3 SELECTION: CHAIN C AND (RESID 238:253 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.1241 14.4025 15.4295 REMARK 3 T TENSOR REMARK 3 T11: 0.2176 T22: 0.1828 REMARK 3 T33: 0.3342 T12: -0.0826 REMARK 3 T13: -0.0182 T23: 0.0357 REMARK 3 L TENSOR REMARK 3 L11: 6.7360 L22: 5.6334 REMARK 3 L33: 1.0226 L12: -5.3517 REMARK 3 L13: 2.2580 L23: -1.2917 REMARK 3 S TENSOR REMARK 3 S11: 0.1572 S12: -0.0062 S13: -0.3887 REMARK 3 S21: -0.3940 S22: 0.0026 S23: 0.0958 REMARK 3 S31: 0.1050 S32: -0.0020 S33: -0.1196 REMARK 3 TLS GROUP : 17 REMARK 3 SELECTION: CHAIN D AND (RESID 126:171 ) REMARK 3 ORIGIN FOR THE GROUP (A): 1.8960 -0.0129 -44.2117 REMARK 3 T TENSOR REMARK 3 T11: 0.2943 T22: 0.3382 REMARK 3 T33: 0.3707 T12: -0.1158 REMARK 3 T13: -0.0545 T23: 0.1507 REMARK 3 L TENSOR REMARK 3 L11: 2.4785 L22: 3.3284 REMARK 3 L33: 3.3233 L12: 0.9152 REMARK 3 L13: 1.4567 L23: -1.9968 REMARK 3 S TENSOR REMARK 3 S11: -0.0227 S12: -0.2523 S13: -0.7591 REMARK 3 S21: -0.2807 S22: 0.3458 S23: 0.4512 REMARK 3 S31: 0.6423 S32: -0.7644 S33: -0.3641 REMARK 3 TLS GROUP : 18 REMARK 3 SELECTION: CHAIN D AND (RESID 172:200 ) REMARK 3 ORIGIN FOR THE GROUP (A): -2.0137 -4.2377 -43.2535 REMARK 3 T TENSOR REMARK 3 T11: 0.3676 T22: 0.4296 REMARK 3 T33: 0.7805 T12: -0.4726 REMARK 3 T13: -0.3549 T23: 0.1978 REMARK 3 L TENSOR REMARK 3 L11: 3.0232 L22: 0.5004 REMARK 3 L33: 1.8949 L12: -0.9041 REMARK 3 L13: -0.2753 L23: -0.6047 REMARK 3 S TENSOR REMARK 3 S11: -0.2531 S12: -0.6971 S13: -0.7919 REMARK 3 S21: 0.0057 S22: 1.1244 S23: 1.0865 REMARK 3 S31: 0.8929 S32: -1.0249 S33: -0.3796 REMARK 3 TLS GROUP : 19 REMARK 3 SELECTION: CHAIN D AND (RESID 201:218 ) REMARK 3 ORIGIN FOR THE GROUP (A): 2.6418 5.2452 -32.9527 REMARK 3 T TENSOR REMARK 3 T11: 0.2911 T22: 0.4113 REMARK 3 T33: 0.2704 T12: -0.0645 REMARK 3 T13: -0.0254 T23: 0.2318 REMARK 3 L TENSOR REMARK 3 L11: 6.9225 L22: 9.8689 REMARK 3 L33: 6.1882 L12: -3.1988 REMARK 3 L13: 0.3814 L23: 3.9823 REMARK 3 S TENSOR REMARK 3 S11: -0.2910 S12: -1.1507 S13: -0.0348 REMARK 3 S21: 0.5808 S22: 0.6893 S23: 0.0116 REMARK 3 S31: 0.5820 S32: -1.0176 S33: -0.4619 REMARK 3 TLS GROUP : 20 REMARK 3 SELECTION: CHAIN D AND (RESID 219:225 ) REMARK 3 ORIGIN FOR THE GROUP (A): -0.5385 -20.7179 -43.7396 REMARK 3 T TENSOR REMARK 3 T11: 0.7518 T22: 0.4403 REMARK 3 T33: 0.9397 T12: -0.1942 REMARK 3 T13: 0.0145 T23: 0.0244 REMARK 3 L TENSOR REMARK 3 L11: 1.9983 L22: 3.7356 REMARK 3 L33: 7.0887 L12: 3.5541 REMARK 3 L13: 5.9823 L23: 3.5216 REMARK 3 S TENSOR REMARK 3 S11: 0.1714 S12: 0.0724 S13: -1.5103 REMARK 3 S21: 0.3859 S22: -0.1688 S23: 0.3717 REMARK 3 S31: 0.0621 S32: -0.0152 S33: -0.0468 REMARK 3 TLS GROUP : 21 REMARK 3 SELECTION: CHAIN D AND (RESID 226:237 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.8660 -1.2841 -39.0656 REMARK 3 T TENSOR REMARK 3 T11: 0.3345 T22: 0.2216 REMARK 3 T33: 0.4208 T12: -0.0229 REMARK 3 T13: -0.1434 T23: 0.1001 REMARK 3 L TENSOR REMARK 3 L11: 3.1757 L22: 2.0164 REMARK 3 L33: 8.4830 L12: 1.3748 REMARK 3 L13: -0.4726 L23: 8.2413 REMARK 3 S TENSOR REMARK 3 S11: -0.0299 S12: -0.2119 S13: -0.9202 REMARK 3 S21: 0.7661 S22: 0.5542 S23: -0.2838 REMARK 3 S31: 0.8855 S32: -0.0021 S33: -0.3662 REMARK 3 TLS GROUP : 22 REMARK 3 SELECTION: CHAIN D AND (RESID 238:243 ) REMARK 3 ORIGIN FOR THE GROUP (A): 0.3625 17.0350 -40.1372 REMARK 3 T TENSOR REMARK 3 T11: 0.3334 T22: 0.4604 REMARK 3 T33: 0.3439 T12: 0.1178 REMARK 3 T13: 0.0708 T23: 0.1325 REMARK 3 L TENSOR REMARK 3 L11: 1.9987 L22: 3.1568 REMARK 3 L33: 8.6454 L12: -1.3878 REMARK 3 L13: -0.2468 L23: 2.0573 REMARK 3 S TENSOR REMARK 3 S11: 0.6428 S12: 0.0255 S13: 0.4383 REMARK 3 S21: -0.3292 S22: -0.4553 S23: 0.1499 REMARK 3 S31: -0.5025 S32: -0.8384 S33: -0.2867 REMARK 3 TLS GROUP : 23 REMARK 3 SELECTION: CHAIN D AND (RESID 244:254 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.5246 1.6372 -44.7839 REMARK 3 T TENSOR REMARK 3 T11: 0.2963 T22: 0.2024 REMARK 3 T33: 0.4662 T12: -0.0800 REMARK 3 T13: -0.1483 T23: 0.0994 REMARK 3 L TENSOR REMARK 3 L11: 4.4128 L22: 5.5767 REMARK 3 L33: 3.4619 L12: -1.5271 REMARK 3 L13: -1.4417 L23: 1.7252 REMARK 3 S TENSOR REMARK 3 S11: 0.2522 S12: -0.1880 S13: -0.7966 REMARK 3 S21: 0.5723 S22: 0.0046 S23: -0.8571 REMARK 3 S31: 0.4676 S32: -0.2000 S33: -0.2619 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LCV COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 24-JUL-13. REMARK 100 THE RCSB ID CODE IS RCSB080470. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-JUN-12 REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 5.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.934 REMARK 200 MONOCHROMATOR : DIAMOND (111), GE(220) REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 210 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 34604 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.000 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 94.6 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.00 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.06 REMARK 200 COMPLETENESS FOR SHELL (%) : 73.6 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHENIX (PHENIX.REFINE: 1.8_1069) REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 45.11 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.24 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1 M LISO4, 25% PEG 3350, 0.1 M NA- REMARK 280 CITRATE, PH 5.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE 292K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 47.57550 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2, 3, 4 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 3 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: C REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 4 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 APPLY THE FOLLOWING TO CHAINS: D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 118 REMARK 465 GLY A 119 REMARK 465 SER A 120 REMARK 465 GLY A 121 REMARK 465 SER A 122 REMARK 465 GLY A 123 REMARK 465 SER A 124 REMARK 465 THR A 125 REMARK 465 MET A 156 REMARK 465 ASP A 157 REMARK 465 HIS A 158 REMARK 465 ASN A 159 REMARK 465 GLY A 160 REMARK 465 LEU A 254 REMARK 465 PRO A 255 REMARK 465 GLY B 118 REMARK 465 GLY B 119 REMARK 465 SER B 120 REMARK 465 GLY B 121 REMARK 465 SER B 122 REMARK 465 GLY B 123 REMARK 465 PRO B 255 REMARK 465 GLY C 118 REMARK 465 GLY C 119 REMARK 465 SER C 120 REMARK 465 GLY C 121 REMARK 465 SER C 122 REMARK 465 GLY C 123 REMARK 465 SER C 124 REMARK 465 LEU C 254 REMARK 465 PRO C 255 REMARK 465 GLY D 118 REMARK 465 GLY D 119 REMARK 465 SER D 120 REMARK 465 GLY D 121 REMARK 465 SER D 122 REMARK 465 GLY D 123 REMARK 465 SER D 124 REMARK 465 THR D 125 REMARK 465 HIS D 158 REMARK 465 ASN D 159 REMARK 465 GLY D 160 REMARK 465 PRO D 255 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 151 CD CE NZ REMARK 470 LYS A 154 CG CD CE NZ REMARK 470 LYS A 176 CG CD CE NZ REMARK 470 LYS A 179 CG CD CE NZ REMARK 470 ARG A 209 CD NE CZ NH1 NH2 REMARK 470 LYS A 239 CE NZ REMARK 470 GLN A 253 CG CD OE1 NE2 REMARK 470 SER B 124 OG REMARK 470 LYS B 151 CD CE NZ REMARK 470 LYS B 176 CG CD CE NZ REMARK 470 ARG B 186 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 221 CG CD CE NZ REMARK 470 ARG B 223 CG CD NE CZ NH1 NH2 REMARK 470 HIS B 224 CG ND1 CD2 CE1 NE2 REMARK 470 LYS B 236 CD CE NZ REMARK 470 LYS B 239 CD CE NZ REMARK 470 LYS B 252 CG CD CE NZ REMARK 470 THR C 125 OG1 CG2 REMARK 470 LYS C 149 NZ REMARK 470 LYS C 154 CE NZ REMARK 470 SER C 175 OG REMARK 470 LYS C 176 CG CD CE NZ REMARK 470 LYS C 179 CG CD CE NZ REMARK 470 ARG C 223 CZ NH1 NH2 REMARK 470 LYS C 237 CE NZ REMARK 470 LYS C 239 CE NZ REMARK 470 LYS C 252 CG CD CE NZ REMARK 470 GLN C 253 CG CD OE1 NE2 REMARK 470 GLU D 139 CG CD OE1 OE2 REMARK 470 LYS D 151 CG CD CE NZ REMARK 470 LYS D 154 CE NZ REMARK 470 ASP D 157 CG OD1 OD2 REMARK 470 LEU D 161 CG CD1 CD2 REMARK 470 LYS D 176 CG CD CE NZ REMARK 470 LYS D 179 CG CD CE NZ REMARK 470 LYS D 183 CG CD CE NZ REMARK 470 ARG D 186 CG CD NE CZ NH1 NH2 REMARK 470 ARG D 223 CG CD NE CZ NH1 NH2 REMARK 470 HIS D 224 CG ND1 CD2 CE1 NE2 REMARK 470 LYS D 237 CD CE NZ REMARK 470 LYS D 239 CD CE NZ REMARK 470 LYS D 252 CG CD CE NZ REMARK 470 LEU D 254 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O HOH C 401 O HOH C 453 1.81 REMARK 500 O ALA B 177 O HOH B 417 1.87 REMARK 500 O ASN B 225 O HOH B 438 1.92 REMARK 500 OE2 GLU B 195 O HOH B 416 1.94 REMARK 500 N LEU A 127 O HOH A 460 1.95 REMARK 500 OD2 ASP A 220 O HOH A 468 1.97 REMARK 500 O HOH C 457 O HOH C 471 2.03 REMARK 500 O HOH A 423 O HOH A 458 2.03 REMARK 500 O HOH C 411 O HOH C 421 2.06 REMARK 500 O HOH D 444 O HOH D 446 2.07 REMARK 500 O HOH A 465 O HOH B 451 2.08 REMARK 500 O HOH C 464 O HOH C 465 2.11 REMARK 500 O HOH A 421 O HOH A 466 2.13 REMARK 500 O HOH D 434 O HOH D 435 2.14 REMARK 500 O HOH D 404 O HOH D 438 2.16 REMARK 500 OD2 ASP D 137 O HOH D 423 2.18 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 OB1 FLC D 302 O HOH C 428 1554 1.73 REMARK 500 OD1 ASN A 140 NH2 ARG C 186 2545 2.04 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: COVALENT BOND ANGLES REMARK 500 REMARK 500 THE STEREOCHEMICAL PARAMETERS OF THE FOLLOWING RESIDUES REMARK 500 HAVE VALUES WHICH DEVIATE FROM EXPECTED VALUES BY MORE REMARK 500 THAN 6*RMSD (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 500 IDENTIFIER; SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT: (10X,I3,1X,A3,1X,A1,I4,A1,3(1X,A4,2X),12X,F5.1) REMARK 500 REMARK 500 EXPECTED VALUES PROTEIN: ENGH AND HUBER, 1999 REMARK 500 EXPECTED VALUES NUCLEIC ACID: CLOWNEY ET AL 1996 REMARK 500 REMARK 500 M RES CSSEQI ATM1 ATM2 ATM3 REMARK 500 PRO A 172 C - N - CD ANGL. DEV. = -13.2 DEGREES REMARK 500 PRO C 172 C - N - CD ANGL. DEV. = -17.6 DEGREES REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASP A 163 79.34 -116.94 REMARK 500 PRO A 172 84.84 35.90 REMARK 500 ARG A 223 -156.72 -129.75 REMARK 500 SER B 148 -71.52 -87.87 REMARK 500 ASP B 163 74.85 -116.02 REMARK 500 GLU B 219 41.12 -76.22 REMARK 500 ALA C 126 -65.79 59.57 REMARK 500 LEU C 161 -147.95 -116.46 REMARK 500 PRO C 172 103.38 38.60 REMARK 500 ILE C 228 -63.26 -106.72 REMARK 500 SER D 148 -70.27 -83.00 REMARK 500 ASN D 187 63.44 34.09 REMARK 500 ARG D 223 -117.80 -116.13 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 LEU A 171 PRO A 172 -128.60 REMARK 500 LEU C 171 PRO C 172 -121.83 REMARK 500 REMARK 500 REMARK: NULL REMARK 525 REMARK 525 SOLVENT REMARK 525 REMARK 525 THE SOLVENT MOLECULES HAVE CHAIN IDENTIFIERS THAT REMARK 525 INDICATE THE POLYMER CHAIN WITH WHICH THEY ARE MOST REMARK 525 CLOSELY ASSOCIATED. THE REMARK LISTS ALL THE SOLVENT REMARK 525 MOLECULES WHICH ARE MORE THAN 5A AWAY FROM THE REMARK 525 NEAREST POLYMER CHAIN (M = MODEL NUMBER; REMARK 525 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE REMARK 525 NUMBER; I=INSERTION CODE): REMARK 525 REMARK 525 M RES CSSEQI REMARK 525 HOH A 438 DISTANCE = 5.12 ANGSTROMS REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 302 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 220 OD2 REMARK 620 2 GLU C 226 OE1 98.5 REMARK 620 3 ASP C 218 OD2 94.1 71.7 REMARK 620 4 ASP C 157 OD1 117.3 129.6 71.5 REMARK 620 5 GLU C 226 OE2 72.4 49.5 114.8 168.9 REMARK 620 6 ASP C 220 OD1 51.2 126.0 68.4 67.3 123.1 REMARK 620 7 MET C 156 O 159.4 77.0 103.3 79.2 90.2 146.5 REMARK 620 N 1 2 3 4 5 6 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CA C 301 CA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP C 157 OD2 REMARK 620 2 ASP C 220 OD1 124.4 REMARK 620 3 ASP C 218 OD1 95.1 95.9 REMARK 620 4 ASP C 163 OD2 89.1 132.3 115.6 REMARK 620 5 ASP C 157 OD1 53.5 72.8 87.5 138.7 REMARK 620 6 GLU C 219 O 160.1 75.5 82.5 74.4 145.5 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE BME A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CA C 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 C 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 D 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE FLC D 302 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LDC RELATED DB: PDB REMARK 900 CRYSTAL STRUCTURE OF DOC2B C2B DOMAIN DBREF 4LCV A 125 255 UNP P70610 DOC2B_RAT 125 255 DBREF 4LCV B 125 255 UNP P70610 DOC2B_RAT 125 255 DBREF 4LCV C 125 255 UNP P70610 DOC2B_RAT 125 255 DBREF 4LCV D 125 255 UNP P70610 DOC2B_RAT 125 255 SEQADV 4LCV GLY A 118 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY A 119 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER A 120 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY A 121 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER A 122 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY A 123 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER A 124 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY B 118 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY B 119 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER B 120 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY B 121 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER B 122 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY B 123 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER B 124 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY C 118 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY C 119 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER C 120 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY C 121 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER C 122 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY C 123 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER C 124 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY D 118 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY D 119 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER D 120 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY D 121 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER D 122 UNP P70610 EXPRESSION TAG SEQADV 4LCV GLY D 123 UNP P70610 EXPRESSION TAG SEQADV 4LCV SER D 124 UNP P70610 EXPRESSION TAG SEQRES 1 A 138 GLY GLY SER GLY SER GLY SER THR ALA LEU GLY THR LEU SEQRES 2 A 138 ASP PHE SER LEU LEU TYR ASP GLN GLU ASN ASN ALA LEU SEQRES 3 A 138 HIS CYS THR ILE SER LYS ALA LYS GLY LEU LYS PRO MET SEQRES 4 A 138 ASP HIS ASN GLY LEU ALA ASP PRO TYR VAL LYS LEU HIS SEQRES 5 A 138 LEU LEU PRO GLY ALA SER LYS ALA ASN LYS LEU ARG THR SEQRES 6 A 138 LYS THR LEU ARG ASN THR LEU ASN PRO SER TRP ASN GLU SEQRES 7 A 138 THR LEU THR TYR TYR GLY ILE THR ASP GLU ASP MET ILE SEQRES 8 A 138 ARG LYS THR LEU ARG ILE SER VAL CYS ASP GLU ASP LYS SEQRES 9 A 138 PHE ARG HIS ASN GLU PHE ILE GLY GLU THR ARG VAL PRO SEQRES 10 A 138 LEU LYS LYS LEU LYS PRO ASN HIS THR LYS THR PHE SER SEQRES 11 A 138 ILE CYS LEU GLU LYS GLN LEU PRO SEQRES 1 B 138 GLY GLY SER GLY SER GLY SER THR ALA LEU GLY THR LEU SEQRES 2 B 138 ASP PHE SER LEU LEU TYR ASP GLN GLU ASN ASN ALA LEU SEQRES 3 B 138 HIS CYS THR ILE SER LYS ALA LYS GLY LEU LYS PRO MET SEQRES 4 B 138 ASP HIS ASN GLY LEU ALA ASP PRO TYR VAL LYS LEU HIS SEQRES 5 B 138 LEU LEU PRO GLY ALA SER LYS ALA ASN LYS LEU ARG THR SEQRES 6 B 138 LYS THR LEU ARG ASN THR LEU ASN PRO SER TRP ASN GLU SEQRES 7 B 138 THR LEU THR TYR TYR GLY ILE THR ASP GLU ASP MET ILE SEQRES 8 B 138 ARG LYS THR LEU ARG ILE SER VAL CYS ASP GLU ASP LYS SEQRES 9 B 138 PHE ARG HIS ASN GLU PHE ILE GLY GLU THR ARG VAL PRO SEQRES 10 B 138 LEU LYS LYS LEU LYS PRO ASN HIS THR LYS THR PHE SER SEQRES 11 B 138 ILE CYS LEU GLU LYS GLN LEU PRO SEQRES 1 C 138 GLY GLY SER GLY SER GLY SER THR ALA LEU GLY THR LEU SEQRES 2 C 138 ASP PHE SER LEU LEU TYR ASP GLN GLU ASN ASN ALA LEU SEQRES 3 C 138 HIS CYS THR ILE SER LYS ALA LYS GLY LEU LYS PRO MET SEQRES 4 C 138 ASP HIS ASN GLY LEU ALA ASP PRO TYR VAL LYS LEU HIS SEQRES 5 C 138 LEU LEU PRO GLY ALA SER LYS ALA ASN LYS LEU ARG THR SEQRES 6 C 138 LYS THR LEU ARG ASN THR LEU ASN PRO SER TRP ASN GLU SEQRES 7 C 138 THR LEU THR TYR TYR GLY ILE THR ASP GLU ASP MET ILE SEQRES 8 C 138 ARG LYS THR LEU ARG ILE SER VAL CYS ASP GLU ASP LYS SEQRES 9 C 138 PHE ARG HIS ASN GLU PHE ILE GLY GLU THR ARG VAL PRO SEQRES 10 C 138 LEU LYS LYS LEU LYS PRO ASN HIS THR LYS THR PHE SER SEQRES 11 C 138 ILE CYS LEU GLU LYS GLN LEU PRO SEQRES 1 D 138 GLY GLY SER GLY SER GLY SER THR ALA LEU GLY THR LEU SEQRES 2 D 138 ASP PHE SER LEU LEU TYR ASP GLN GLU ASN ASN ALA LEU SEQRES 3 D 138 HIS CYS THR ILE SER LYS ALA LYS GLY LEU LYS PRO MET SEQRES 4 D 138 ASP HIS ASN GLY LEU ALA ASP PRO TYR VAL LYS LEU HIS SEQRES 5 D 138 LEU LEU PRO GLY ALA SER LYS ALA ASN LYS LEU ARG THR SEQRES 6 D 138 LYS THR LEU ARG ASN THR LEU ASN PRO SER TRP ASN GLU SEQRES 7 D 138 THR LEU THR TYR TYR GLY ILE THR ASP GLU ASP MET ILE SEQRES 8 D 138 ARG LYS THR LEU ARG ILE SER VAL CYS ASP GLU ASP LYS SEQRES 9 D 138 PHE ARG HIS ASN GLU PHE ILE GLY GLU THR ARG VAL PRO SEQRES 10 D 138 LEU LYS LYS LEU LYS PRO ASN HIS THR LYS THR PHE SER SEQRES 11 D 138 ILE CYS LEU GLU LYS GLN LEU PRO HET SO4 A 301 5 HET BME A 302 4 HET SO4 B 301 5 HET CA C 301 1 HET CA C 302 1 HET SO4 C 303 5 HET SO4 D 301 5 HET FLC D 302 13 HETNAM SO4 SULFATE ION HETNAM BME BETA-MERCAPTOETHANOL HETNAM CA CALCIUM ION HETNAM FLC CITRATE ANION FORMUL 5 SO4 4(O4 S 2-) FORMUL 6 BME C2 H6 O S FORMUL 8 CA 2(CA 2+) FORMUL 12 FLC C6 H5 O7 3- FORMUL 13 HOH *261(H2 O) HELIX 1 1 GLN A 138 ASN A 141 5 4 HELIX 2 2 SER A 175 ALA A 177 5 3 HELIX 3 3 THR A 203 LYS A 210 1 8 HELIX 4 4 LYS A 236 LEU A 238 5 3 HELIX 5 5 SER B 175 ALA B 177 5 3 HELIX 6 6 THR B 203 LYS B 210 1 8 HELIX 7 7 LYS B 236 LEU B 238 5 3 HELIX 8 8 GLN C 138 ASN C 141 5 4 HELIX 9 9 SER C 175 ALA C 177 5 3 HELIX 10 10 THR C 203 LYS C 210 1 8 HELIX 11 11 LYS C 236 LEU C 238 5 3 HELIX 12 12 SER D 175 ALA D 177 5 3 HELIX 13 13 GLU D 205 LYS D 210 1 6 HELIX 14 14 LYS D 236 LEU D 238 5 3 SHEET 1 A 8 SER A 192 TYR A 199 0 SHEET 2 A 8 ALA A 142 LYS A 151 -1 N CYS A 145 O LEU A 197 SHEET 3 A 8 THR A 129 ASP A 137 -1 N ASP A 131 O LYS A 149 SHEET 4 A 8 LYS A 244 CYS A 249 -1 O PHE A 246 N PHE A 132 SHEET 5 A 8 LYS B 244 CYS B 249 1 O SER B 247 N CYS A 249 SHEET 6 A 8 THR B 129 ASP B 137 -1 N PHE B 132 O PHE B 246 SHEET 7 A 8 ALA B 142 LYS B 151 -1 O LYS B 149 N ASP B 131 SHEET 8 A 8 SER B 192 TYR B 200 -1 O GLU B 195 N ILE B 147 SHEET 1 B 4 LYS A 179 ARG A 181 0 SHEET 2 B 4 PRO A 164 LEU A 171 -1 N LEU A 168 O LEU A 180 SHEET 3 B 4 THR A 211 ASP A 218 -1 O THR A 211 N LEU A 171 SHEET 4 B 4 GLU A 226 PRO A 234 -1 O GLU A 226 N ASP A 218 SHEET 1 C 4 LYS B 179 ARG B 181 0 SHEET 2 C 4 PRO B 164 LEU B 171 -1 N LEU B 168 O LEU B 180 SHEET 3 C 4 THR B 211 ASP B 218 -1 O THR B 211 N LEU B 171 SHEET 4 C 4 PHE B 227 PRO B 234 -1 O VAL B 233 N LEU B 212 SHEET 1 D 4 SER C 192 TYR C 199 0 SHEET 2 D 4 ALA C 142 LYS C 151 -1 N CYS C 145 O LEU C 197 SHEET 3 D 4 THR C 129 ASP C 137 -1 N ASP C 131 O LYS C 149 SHEET 4 D 4 LYS C 244 CYS C 249 -1 O PHE C 246 N PHE C 132 SHEET 1 E 4 LYS C 179 ARG C 181 0 SHEET 2 E 4 PRO C 164 LEU C 171 -1 N LEU C 168 O LEU C 180 SHEET 3 E 4 THR C 211 ASP C 218 -1 O ARG C 213 N HIS C 169 SHEET 4 E 4 GLU C 226 PRO C 234 -1 O GLY C 229 N VAL C 216 SHEET 1 F 4 SER D 192 TYR D 200 0 SHEET 2 F 4 ALA D 142 LYS D 151 -1 N CYS D 145 O LEU D 197 SHEET 3 F 4 THR D 129 ASP D 137 -1 N LEU D 135 O HIS D 144 SHEET 4 F 4 LYS D 244 CYS D 249 -1 O PHE D 246 N PHE D 132 SHEET 1 G 4 LYS D 179 ARG D 181 0 SHEET 2 G 4 PRO D 164 LEU D 171 -1 N LEU D 168 O LEU D 180 SHEET 3 G 4 THR D 211 ASP D 218 -1 O SER D 215 N LYS D 167 SHEET 4 G 4 GLU D 226 PRO D 234 -1 O GLU D 226 N ASP D 218 SSBOND 1 CYS A 249 CYS B 249 1555 1555 2.04 SSBOND 2 CYS C 249 CYS D 249 1555 1556 2.04 LINK OD2 ASP C 220 CA CA C 302 1555 1555 2.19 LINK OD2 ASP C 157 CA CA C 301 1555 1555 2.31 LINK OD1 ASP C 220 CA CA C 301 1555 1555 2.31 LINK OE1 GLU C 226 CA CA C 302 1555 1555 2.38 LINK OD2 ASP C 218 CA CA C 302 1555 1555 2.42 LINK OD1 ASP C 218 CA CA C 301 1555 1555 2.42 LINK OD1 ASP C 157 CA CA C 302 1555 1555 2.43 LINK OD2 ASP C 163 CA CA C 301 1555 1555 2.45 LINK OD1 ASP C 157 CA CA C 301 1555 1555 2.55 LINK O GLU C 219 CA CA C 301 1555 1555 2.58 LINK OE2 GLU C 226 CA CA C 302 1555 1555 2.73 LINK OD1 ASP C 220 CA CA C 302 1555 1555 2.76 LINK O MET C 156 CA CA C 302 1555 1555 2.89 CISPEP 1 LEU B 171 PRO B 172 0 -9.11 CISPEP 2 LEU D 171 PRO D 172 0 -4.03 SITE 1 AC1 4 LYS A 167 HIS A 169 ARG A 213 SER A 215 SITE 1 AC2 3 TYR A 165 LYS A 167 ARG A 181 SITE 1 AC3 7 LYS B 167 HIS B 169 LYS B 179 ARG B 213 SITE 2 AC3 7 HOH B 411 HOH B 448 HOH B 460 SITE 1 AC4 5 ASP C 157 ASP C 163 ASP C 218 GLU C 219 SITE 2 AC4 5 ASP C 220 SITE 1 AC5 5 MET C 156 ASP C 157 ASP C 218 ASP C 220 SITE 2 AC5 5 GLU C 226 SITE 1 AC6 5 SER B 124 LYS B 154 ARG C 209 LYS C 210 SITE 2 AC6 5 HOH C 462 SITE 1 AC7 4 TYR D 165 LYS D 167 ARG D 181 ASN D 225 SITE 1 AC8 11 ASN C 159 ASN C 187 LYS C 239 HIS C 242 SITE 2 AC8 11 LYS C 244 HOH C 428 LEU D 135 ASN D 241 SITE 3 AC8 11 HIS D 242 THR D 243 HOH D 402 CRYST1 43.632 95.151 67.816 90.00 99.95 90.00 P 1 21 1 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.022919 0.000000 0.004019 0.00000 SCALE2 0.000000 0.010510 0.000000 0.00000 SCALE3 0.000000 0.000000 0.014971 0.00000