data_4LD1 # _entry.id 4LD1 # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.281 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4LD1 RCSB RCSB080476 WWPDB D_1000080476 # loop_ _pdbx_database_related.db_name _pdbx_database_related.db_id _pdbx_database_related.details _pdbx_database_related.content_type PDB 4ld3 . unspecified PDB 4lzf . unspecified # _pdbx_database_status.status_code REL _pdbx_database_status.entry_id 4LD1 _pdbx_database_status.recvd_initial_deposition_date 2013-06-24 _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry ? _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Hatzopoulos, G.N.' 1 'Vakonakis, I.' 2 # _citation.id primary _citation.title 'Structural analysis of the G-box domain of the microcephaly protein CPAP suggests a role in centriole architecture.' _citation.journal_abbrev Structure _citation.journal_volume 21 _citation.page_first 2069 _citation.page_last 2077 _citation.year 2013 _citation.journal_id_ASTM STRUE6 _citation.country UK _citation.journal_id_ISSN 0969-2126 _citation.journal_id_CSD 2005 _citation.book_publisher ? _citation.pdbx_database_id_PubMed 24076405 _citation.pdbx_database_id_DOI 10.1016/j.str.2013.08.019 # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Hatzopoulos, G.N.' 1 primary 'Erat, M.C.' 2 primary 'Cutts, E.' 3 primary 'Rogala, K.B.' 4 primary 'Slater, L.M.' 5 primary 'Stansfeld, P.J.' 6 primary 'Vakonakis, I.' 7 # _cell.entry_id 4LD1 _cell.length_a 41.632 _cell.length_b 50.254 _cell.length_c 60.345 _cell.angle_alpha 90.00 _cell.angle_beta 108.56 _cell.angle_gamma 90.00 _cell.Z_PDB 2 _cell.pdbx_unique_axis ? _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.entry_id 4LD1 _symmetry.space_group_name_H-M 'P 1 21 1' _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.cell_setting ? _symmetry.Int_Tables_number 4 _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Uncharacterized protein' 20860.330 1 ? ? 'unp residues 942-1121' ? 2 non-polymer syn 'NITRATE ION' 62.005 2 ? ? ? ? 3 non-polymer syn 'TRIETHYLENE GLYCOL' 150.173 1 ? ? ? ? 4 non-polymer syn 'TETRAETHYLENE GLYCOL' 194.226 1 ? ? ? ? 5 non-polymer syn '(4S)-2-METHYL-2,4-PENTANEDIOL' 118.174 1 ? ? ? ? 6 water nat water 18.015 204 ? ? ? ? # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer no _entity_poly.pdbx_seq_one_letter_code ;GPLGSDSKIEKMLPDGGRLVVFPNGTRKELSADGQTVKVMFFNGDVKHTMPDQRVIYYYAEAQTTHITYPDGMEVLQFPN NQTEKHFPDGRKEITFPDQTVKTLHPDGREESVLTDGTIIQLNPDGSKVIQFNTGQREIHTADFKRREYPDGTVKTVYSD GRQETQYPTGRVRLKDPQGKVIMD ; _entity_poly.pdbx_seq_one_letter_code_can ;GPLGSDSKIEKMLPDGGRLVVFPNGTRKELSADGQTVKVMFFNGDVKHTMPDQRVIYYYAEAQTTHITYPDGMEVLQFPN NQTEKHFPDGRKEITFPDQTVKTLHPDGREESVLTDGTIIQLNPDGSKVIQFNTGQREIHTADFKRREYPDGTVKTVYSD GRQETQYPTGRVRLKDPQGKVIMD ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier ? # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 GLY n 1 2 PRO n 1 3 LEU n 1 4 GLY n 1 5 SER n 1 6 ASP n 1 7 SER n 1 8 LYS n 1 9 ILE n 1 10 GLU n 1 11 LYS n 1 12 MET n 1 13 LEU n 1 14 PRO n 1 15 ASP n 1 16 GLY n 1 17 GLY n 1 18 ARG n 1 19 LEU n 1 20 VAL n 1 21 VAL n 1 22 PHE n 1 23 PRO n 1 24 ASN n 1 25 GLY n 1 26 THR n 1 27 ARG n 1 28 LYS n 1 29 GLU n 1 30 LEU n 1 31 SER n 1 32 ALA n 1 33 ASP n 1 34 GLY n 1 35 GLN n 1 36 THR n 1 37 VAL n 1 38 LYS n 1 39 VAL n 1 40 MET n 1 41 PHE n 1 42 PHE n 1 43 ASN n 1 44 GLY n 1 45 ASP n 1 46 VAL n 1 47 LYS n 1 48 HIS n 1 49 THR n 1 50 MET n 1 51 PRO n 1 52 ASP n 1 53 GLN n 1 54 ARG n 1 55 VAL n 1 56 ILE n 1 57 TYR n 1 58 TYR n 1 59 TYR n 1 60 ALA n 1 61 GLU n 1 62 ALA n 1 63 GLN n 1 64 THR n 1 65 THR n 1 66 HIS n 1 67 ILE n 1 68 THR n 1 69 TYR n 1 70 PRO n 1 71 ASP n 1 72 GLY n 1 73 MET n 1 74 GLU n 1 75 VAL n 1 76 LEU n 1 77 GLN n 1 78 PHE n 1 79 PRO n 1 80 ASN n 1 81 ASN n 1 82 GLN n 1 83 THR n 1 84 GLU n 1 85 LYS n 1 86 HIS n 1 87 PHE n 1 88 PRO n 1 89 ASP n 1 90 GLY n 1 91 ARG n 1 92 LYS n 1 93 GLU n 1 94 ILE n 1 95 THR n 1 96 PHE n 1 97 PRO n 1 98 ASP n 1 99 GLN n 1 100 THR n 1 101 VAL n 1 102 LYS n 1 103 THR n 1 104 LEU n 1 105 HIS n 1 106 PRO n 1 107 ASP n 1 108 GLY n 1 109 ARG n 1 110 GLU n 1 111 GLU n 1 112 SER n 1 113 VAL n 1 114 LEU n 1 115 THR n 1 116 ASP n 1 117 GLY n 1 118 THR n 1 119 ILE n 1 120 ILE n 1 121 GLN n 1 122 LEU n 1 123 ASN n 1 124 PRO n 1 125 ASP n 1 126 GLY n 1 127 SER n 1 128 LYS n 1 129 VAL n 1 130 ILE n 1 131 GLN n 1 132 PHE n 1 133 ASN n 1 134 THR n 1 135 GLY n 1 136 GLN n 1 137 ARG n 1 138 GLU n 1 139 ILE n 1 140 HIS n 1 141 THR n 1 142 ALA n 1 143 ASP n 1 144 PHE n 1 145 LYS n 1 146 ARG n 1 147 ARG n 1 148 GLU n 1 149 TYR n 1 150 PRO n 1 151 ASP n 1 152 GLY n 1 153 THR n 1 154 VAL n 1 155 LYS n 1 156 THR n 1 157 VAL n 1 158 TYR n 1 159 SER n 1 160 ASP n 1 161 GLY n 1 162 ARG n 1 163 GLN n 1 164 GLU n 1 165 THR n 1 166 GLN n 1 167 TYR n 1 168 PRO n 1 169 THR n 1 170 GLY n 1 171 ARG n 1 172 VAL n 1 173 ARG n 1 174 LEU n 1 175 LYS n 1 176 ASP n 1 177 PRO n 1 178 GLN n 1 179 GLY n 1 180 LYS n 1 181 VAL n 1 182 ILE n 1 183 MET n 1 184 ASP n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name 'leopard danio,zebra danio,zebra fish' _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene cenpj _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ? _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Danio rerio' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 7955 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 562 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain ? _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type ? _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name ? _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code E7FCY1_DANRE _struct_ref.pdbx_db_accession E7FCY1 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;SDSKIEKMLPDGGRLVVFPNGTRKELSADGQTVKVMFFNGDVKHTMPDQRVIYYYAEAQTTHITYPDGMEVLQFPNNQTE KHFPDGRKEITFPDQTVKTLHPDGREESVLTDGTIIQLNPDGSKVIQFNTGQREIHTADFKRREYPDGTVKTVYSDGRQE TQYPTGRVRLKDPQGKVIMD ; _struct_ref.pdbx_align_begin 942 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LD1 _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 5 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 184 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession E7FCY1 _struct_ref_seq.db_align_beg 942 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 1121 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 942 _struct_ref_seq.pdbx_auth_seq_align_end 1121 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4LD1 GLY A 1 ? UNP E7FCY1 ? ? 'EXPRESSION TAG' 938 1 1 4LD1 PRO A 2 ? UNP E7FCY1 ? ? 'EXPRESSION TAG' 939 2 1 4LD1 LEU A 3 ? UNP E7FCY1 ? ? 'EXPRESSION TAG' 940 3 1 4LD1 GLY A 4 ? UNP E7FCY1 ? ? 'EXPRESSION TAG' 941 4 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MET 'L-peptide linking' y METHIONINE ? 'C5 H11 N O2 S' 149.211 MPD non-polymer . '(4S)-2-METHYL-2,4-PENTANEDIOL' ? 'C6 H14 O2' 118.174 NO3 non-polymer . 'NITRATE ION' ? 'N O3 -1' 62.005 PG4 non-polymer . 'TETRAETHYLENE GLYCOL' ? 'C8 H18 O5' 194.226 PGE non-polymer . 'TRIETHYLENE GLYCOL' ? 'C6 H14 O4' 150.173 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.entry_id 4LD1 _exptl.method 'X-RAY DIFFRACTION' _exptl.crystals_number 1 # _exptl_crystal.id 1 _exptl_crystal.density_meas ? _exptl_crystal.density_Matthews 2.87 _exptl_crystal.density_percent_sol 57.12 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.temp 277 _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pH 6.5 _exptl_crystal_grow.pdbx_details ;0.1 M MES/Imidazole, 0.03 M sodium nitrate, 0.03 M disodium hydrogen phosphate, 0.03 M ammonium sulfate, 12.5% w/v PEG 1000, 12.5% w/v PEG 3350, 12.5% v/v MPD , VAPOR DIFFUSION, SITTING DROP, temperature 277K, pH 6.5 ; _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector PIXEL _diffrn_detector.type 'PSI PILATUS 6M' _diffrn_detector.pdbx_collection_date 2013-03-16 _diffrn_detector.details ? # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l ? _diffrn_radiation.monochromator ? _diffrn_radiation.pdbx_diffrn_protocol ? _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.9795 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'DIAMOND BEAMLINE I04' _diffrn_source.pdbx_synchrotron_site Diamond _diffrn_source.pdbx_synchrotron_beamline I04 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_wavelength_list 0.9795 # _reflns.entry_id 4LD1 _reflns.observed_criterion_sigma_I 156243 _reflns.observed_criterion_sigma_F 156243 _reflns.d_resolution_low 39.47 _reflns.d_resolution_high 1.44 _reflns.number_obs 42577 _reflns.number_all 42877 _reflns.percent_possible_obs 99.30 _reflns.pdbx_Rmerge_I_obs ? _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI ? _reflns.B_iso_Wilson_estimate ? _reflns.pdbx_redundancy ? _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _refine.entry_id 4LD1 _refine.ls_number_reflns_obs 42577 _refine.ls_number_reflns_all 42877 _refine.pdbx_ls_sigma_I ? _refine.pdbx_ls_sigma_F 1.34 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.ls_d_res_low 39.467 _refine.ls_d_res_high 1.440 _refine.ls_percent_reflns_obs 99.30 _refine.ls_R_factor_obs 0.1549 _refine.ls_R_factor_all ? _refine.ls_R_factor_R_work 0.1536 _refine.ls_R_factor_R_free 0.1797 _refine.ls_R_factor_R_free_error ? _refine.ls_R_factor_R_free_error_details ? _refine.ls_percent_reflns_R_free 5.06 _refine.ls_number_reflns_R_free 2156 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.occupancy_min ? _refine.occupancy_max ? _refine.correlation_coeff_Fo_to_Fc ? _refine.correlation_coeff_Fo_to_Fc_free ? _refine.B_iso_mean ? _refine.aniso_B[1][1] ? _refine.aniso_B[2][2] ? _refine.aniso_B[3][3] ? _refine.aniso_B[1][2] ? _refine.aniso_B[1][3] ? _refine.aniso_B[2][3] ? _refine.solvent_model_details 'FLAT BULK SOLVENT MODEL' _refine.solvent_model_param_ksol ? _refine.solvent_model_param_bsol ? _refine.pdbx_solvent_vdw_probe_radii 1.11 _refine.pdbx_solvent_ion_probe_radii ? _refine.pdbx_solvent_shrinkage_radii 0.90 _refine.pdbx_ls_cross_valid_method ? _refine.details ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_isotropic_thermal_model ? _refine.pdbx_stereochemistry_target_values ML _refine.pdbx_stereochem_target_val_spec_case ? _refine.pdbx_R_Free_selection_details RANDOM _refine.pdbx_overall_ESU_R ? _refine.pdbx_overall_ESU_R_Free ? _refine.overall_SU_ML 0.14 _refine.pdbx_overall_phase_error 18.49 _refine.overall_SU_B ? _refine.overall_SU_R_Cruickshank_DPI ? _refine.ls_redundancy_reflns_obs ? _refine.B_iso_min ? _refine.B_iso_max ? _refine.overall_SU_R_free ? _refine.ls_wR_factor_R_free ? _refine.ls_wR_factor_R_work ? _refine.overall_FOM_free_R_set ? _refine.overall_FOM_work_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1262 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 39 _refine_hist.number_atoms_solvent 204 _refine_hist.number_atoms_total 1505 _refine_hist.d_res_high 1.440 _refine_hist.d_res_low 39.467 # loop_ _refine_ls_restr.type _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.number _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id f_bond_d 0.009 ? ? 1413 ? 'X-RAY DIFFRACTION' f_angle_d 1.204 ? ? 1918 ? 'X-RAY DIFFRACTION' f_dihedral_angle_d 15.180 ? ? 548 ? 'X-RAY DIFFRACTION' f_chiral_restr 0.070 ? ? 200 ? 'X-RAY DIFFRACTION' f_plane_restr 0.007 ? ? 260 ? 'X-RAY DIFFRACTION' # loop_ _refine_ls_shell.pdbx_total_number_of_bins_used _refine_ls_shell.d_res_high _refine_ls_shell.d_res_low _refine_ls_shell.number_reflns_R_work _refine_ls_shell.R_factor_R_work _refine_ls_shell.percent_reflns_obs _refine_ls_shell.R_factor_R_free _refine_ls_shell.R_factor_R_free_error _refine_ls_shell.percent_reflns_R_free _refine_ls_shell.number_reflns_R_free _refine_ls_shell.number_reflns_all _refine_ls_shell.R_factor_all _refine_ls_shell.number_reflns_obs _refine_ls_shell.redundancy_reflns_obs _refine_ls_shell.pdbx_refine_id . 1.4400 1.4735 2694 0.2237 100.00 0.2901 . . 137 . . . . 'X-RAY DIFFRACTION' . 1.4735 1.5104 2711 0.1894 100.00 0.2469 . . 129 . . . . 'X-RAY DIFFRACTION' . 1.5104 1.5512 2650 0.1611 98.00 0.2183 . . 143 . . . . 'X-RAY DIFFRACTION' . 1.5512 1.5968 2635 0.1303 97.00 0.1658 . . 141 . . . . 'X-RAY DIFFRACTION' . 1.5968 1.6484 2647 0.1279 99.00 0.1931 . . 152 . . . . 'X-RAY DIFFRACTION' . 1.6484 1.7073 2718 0.1287 100.00 0.1835 . . 142 . . . . 'X-RAY DIFFRACTION' . 1.7073 1.7757 2684 0.1252 100.00 0.1667 . . 140 . . . . 'X-RAY DIFFRACTION' . 1.7757 1.8565 2695 0.1209 100.00 0.1576 . . 148 . . . . 'X-RAY DIFFRACTION' . 1.8565 1.9543 2712 0.1234 100.00 0.1687 . . 138 . . . . 'X-RAY DIFFRACTION' . 1.9543 2.0768 2715 0.1227 100.00 0.1608 . . 147 . . . . 'X-RAY DIFFRACTION' . 2.0768 2.2371 2677 0.1351 100.00 0.1682 . . 153 . . . . 'X-RAY DIFFRACTION' . 2.2371 2.4622 2728 0.1400 100.00 0.1665 . . 132 . . . . 'X-RAY DIFFRACTION' . 2.4622 2.8184 2683 0.1612 100.00 0.1931 . . 169 . . . . 'X-RAY DIFFRACTION' . 2.8184 3.5506 2722 0.1606 99.00 0.1892 . . 138 . . . . 'X-RAY DIFFRACTION' . 3.5506 39.4816 2748 0.1721 98.00 0.1765 . . 147 . . . . 'X-RAY DIFFRACTION' # _struct.entry_id 4LD1 _struct.title 'Structural analysis of the microcephaly protein CPAP G-box domain suggests a role in centriole elongation.' _struct.pdbx_descriptor 'Uncharacterized protein' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LD1 _struct_keywords.pdbx_keywords 'structural protein, protein binding' _struct_keywords.text 'beta sheet, G-box, Centriole organisation, structural protein, protein binding' # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 3 ? D N N 4 ? E N N 5 ? F N N 2 ? G N N 6 ? # _struct_biol.id 1 _struct_biol.details ? # _struct_sheet.id A _struct_sheet.type ? _struct_sheet.number_strands 17 _struct_sheet.details ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? anti-parallel A 4 5 ? anti-parallel A 5 6 ? anti-parallel A 6 7 ? anti-parallel A 7 8 ? anti-parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel A 10 11 ? anti-parallel A 11 12 ? anti-parallel A 12 13 ? anti-parallel A 13 14 ? anti-parallel A 14 15 ? anti-parallel A 15 16 ? anti-parallel A 16 17 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 ARG A 18 ? VAL A 21 ? ARG A 955 VAL A 958 A 2 ARG A 27 ? LEU A 30 ? ARG A 964 LEU A 967 A 3 VAL A 37 ? MET A 40 ? VAL A 974 MET A 977 A 4 VAL A 46 ? THR A 49 ? VAL A 983 THR A 986 A 5 VAL A 55 ? TYR A 59 ? VAL A 992 TYR A 996 A 6 THR A 64 ? THR A 68 ? THR A 1001 THR A 1005 A 7 GLU A 74 ? GLN A 77 ? GLU A 1011 GLN A 1014 A 8 THR A 83 ? HIS A 86 ? THR A 1020 HIS A 1023 A 9 LYS A 92 ? THR A 95 ? LYS A 1029 THR A 1032 A 10 VAL A 101 ? LEU A 104 ? VAL A 1038 LEU A 1041 A 11 GLU A 110 ? VAL A 113 ? GLU A 1047 VAL A 1050 A 12 ILE A 119 ? LEU A 122 ? ILE A 1056 LEU A 1059 A 13 LYS A 128 ? GLN A 131 ? LYS A 1065 GLN A 1068 A 14 ARG A 137 ? HIS A 140 ? ARG A 1074 HIS A 1077 A 15 PHE A 144 ? GLU A 148 ? PHE A 1081 GLU A 1085 A 16 VAL A 154 ? TYR A 158 ? VAL A 1091 TYR A 1095 A 17 GLN A 163 ? GLN A 166 ? GLN A 1100 GLN A 1103 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N VAL A 20 ? N VAL A 957 O LYS A 28 ? O LYS A 965 A 2 3 N ARG A 27 ? N ARG A 964 O MET A 40 ? O MET A 977 A 3 4 N VAL A 39 ? N VAL A 976 O LYS A 47 ? O LYS A 984 A 4 5 N HIS A 48 ? N HIS A 985 O ILE A 56 ? O ILE A 993 A 5 6 N TYR A 57 ? N TYR A 994 O HIS A 66 ? O HIS A 1003 A 6 7 N ILE A 67 ? N ILE A 1004 O VAL A 75 ? O VAL A 1012 A 7 8 N GLU A 74 ? N GLU A 1011 O HIS A 86 ? O HIS A 1023 A 8 9 N THR A 83 ? N THR A 1020 O THR A 95 ? O THR A 1032 A 9 10 N LYS A 92 ? N LYS A 1029 O LEU A 104 ? O LEU A 1041 A 10 11 N THR A 103 ? N THR A 1040 O GLU A 111 ? O GLU A 1048 A 11 12 N GLU A 110 ? N GLU A 1047 O LEU A 122 ? O LEU A 1059 A 12 13 N GLN A 121 ? N GLN A 1058 O VAL A 129 ? O VAL A 1066 A 13 14 N LYS A 128 ? N LYS A 1065 O HIS A 140 ? O HIS A 1077 A 14 15 N ILE A 139 ? N ILE A 1076 O ARG A 146 ? O ARG A 1083 A 15 16 N LYS A 145 ? N LYS A 1082 O VAL A 157 ? O VAL A 1094 A 16 17 N VAL A 154 ? N VAL A 1091 O GLN A 166 ? O GLN A 1103 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE NO3 A 1201' AC2 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PGE A 1202' AC3 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE PG4 A 1203' AC4 Software ? ? ? ? 3 'BINDING SITE FOR RESIDUE MPD A 1204' AC5 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE NO3 A 1205' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 3 ASN A 43 ? ASN A 980 . ? 1_555 ? 2 AC1 3 ASP A 45 ? ASP A 982 . ? 1_555 ? 3 AC1 3 HOH G . ? HOH A 1439 . ? 1_555 ? 4 AC2 3 TYR A 69 ? TYR A 1006 . ? 1_555 ? 5 AC2 3 PRO A 70 ? PRO A 1007 . ? 1_555 ? 6 AC2 3 ASP A 71 ? ASP A 1008 . ? 1_555 ? 7 AC3 3 GLU A 111 ? GLU A 1048 . ? 1_555 ? 8 AC3 3 ILE A 119 ? ILE A 1056 . ? 1_555 ? 9 AC3 3 ARG A 137 ? ARG A 1074 . ? 1_555 ? 10 AC4 3 ASN A 80 ? ASN A 1017 . ? 1_555 ? 11 AC4 3 GLN A 82 ? GLN A 1019 . ? 1_555 ? 12 AC4 3 HOH G . ? HOH A 1482 . ? 1_555 ? 13 AC5 6 VAL A 46 ? VAL A 983 . ? 1_555 ? 14 AC5 6 LYS A 47 ? LYS A 984 . ? 1_555 ? 15 AC5 6 TYR A 57 ? TYR A 994 . ? 1_555 ? 16 AC5 6 TYR A 58 ? TYR A 995 . ? 1_555 ? 17 AC5 6 TYR A 59 ? TYR A 996 . ? 1_555 ? 18 AC5 6 HOH G . ? HOH A 1439 . ? 1_555 ? # _database_PDB_matrix.entry_id 4LD1 _database_PDB_matrix.origx[1][1] 1.000000 _database_PDB_matrix.origx[1][2] 0.000000 _database_PDB_matrix.origx[1][3] 0.000000 _database_PDB_matrix.origx[2][1] 0.000000 _database_PDB_matrix.origx[2][2] 1.000000 _database_PDB_matrix.origx[2][3] 0.000000 _database_PDB_matrix.origx[3][1] 0.000000 _database_PDB_matrix.origx[3][2] 0.000000 _database_PDB_matrix.origx[3][3] 1.000000 _database_PDB_matrix.origx_vector[1] 0.00000 _database_PDB_matrix.origx_vector[2] 0.00000 _database_PDB_matrix.origx_vector[3] 0.00000 # _atom_sites.entry_id 4LD1 _atom_sites.fract_transf_matrix[1][1] 0.024020 _atom_sites.fract_transf_matrix[1][2] 0.000000 _atom_sites.fract_transf_matrix[1][3] 0.008065 _atom_sites.fract_transf_matrix[2][1] 0.000000 _atom_sites.fract_transf_matrix[2][2] 0.019899 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] 0.000000 _atom_sites.fract_transf_matrix[3][3] 0.017481 _atom_sites.fract_transf_vector[1] 0.00000 _atom_sites.fract_transf_vector[2] 0.00000 _atom_sites.fract_transf_vector[3] 0.00000 # loop_ _atom_type.symbol C H N O S # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 GLY 1 938 ? ? ? A . n A 1 2 PRO 2 939 ? ? ? A . n A 1 3 LEU 3 940 ? ? ? A . n A 1 4 GLY 4 941 ? ? ? A . n A 1 5 SER 5 942 ? ? ? A . n A 1 6 ASP 6 943 ? ? ? A . n A 1 7 SER 7 944 ? ? ? A . n A 1 8 LYS 8 945 ? ? ? A . n A 1 9 ILE 9 946 ? ? ? A . n A 1 10 GLU 10 947 ? ? ? A . n A 1 11 LYS 11 948 ? ? ? A . n A 1 12 MET 12 949 ? ? ? A . n A 1 13 LEU 13 950 950 LEU LEU A . n A 1 14 PRO 14 951 951 PRO PRO A . n A 1 15 ASP 15 952 952 ASP ASP A . n A 1 16 GLY 16 953 953 GLY GLY A . n A 1 17 GLY 17 954 954 GLY GLY A . n A 1 18 ARG 18 955 955 ARG ARG A . n A 1 19 LEU 19 956 956 LEU LEU A . n A 1 20 VAL 20 957 957 VAL VAL A . n A 1 21 VAL 21 958 958 VAL VAL A . n A 1 22 PHE 22 959 959 PHE PHE A . n A 1 23 PRO 23 960 960 PRO PRO A . n A 1 24 ASN 24 961 961 ASN ASN A . n A 1 25 GLY 25 962 962 GLY GLY A . n A 1 26 THR 26 963 963 THR THR A . n A 1 27 ARG 27 964 964 ARG ARG A . n A 1 28 LYS 28 965 965 LYS LYS A . n A 1 29 GLU 29 966 966 GLU GLU A . n A 1 30 LEU 30 967 967 LEU LEU A . n A 1 31 SER 31 968 968 SER SER A . n A 1 32 ALA 32 969 969 ALA ALA A . n A 1 33 ASP 33 970 970 ASP ASP A . n A 1 34 GLY 34 971 971 GLY GLY A . n A 1 35 GLN 35 972 972 GLN GLN A . n A 1 36 THR 36 973 973 THR THR A . n A 1 37 VAL 37 974 974 VAL VAL A . n A 1 38 LYS 38 975 975 LYS LYS A . n A 1 39 VAL 39 976 976 VAL VAL A . n A 1 40 MET 40 977 977 MET MET A . n A 1 41 PHE 41 978 978 PHE PHE A . n A 1 42 PHE 42 979 979 PHE PHE A . n A 1 43 ASN 43 980 980 ASN ASN A . n A 1 44 GLY 44 981 981 GLY GLY A . n A 1 45 ASP 45 982 982 ASP ASP A . n A 1 46 VAL 46 983 983 VAL VAL A . n A 1 47 LYS 47 984 984 LYS LYS A . n A 1 48 HIS 48 985 985 HIS HIS A . n A 1 49 THR 49 986 986 THR THR A . n A 1 50 MET 50 987 987 MET MET A . n A 1 51 PRO 51 988 988 PRO PRO A . n A 1 52 ASP 52 989 989 ASP ASP A . n A 1 53 GLN 53 990 990 GLN GLN A . n A 1 54 ARG 54 991 991 ARG ARG A . n A 1 55 VAL 55 992 992 VAL VAL A . n A 1 56 ILE 56 993 993 ILE ILE A . n A 1 57 TYR 57 994 994 TYR TYR A . n A 1 58 TYR 58 995 995 TYR TYR A . n A 1 59 TYR 59 996 996 TYR TYR A . n A 1 60 ALA 60 997 997 ALA ALA A . n A 1 61 GLU 61 998 998 GLU GLU A . n A 1 62 ALA 62 999 999 ALA ALA A . n A 1 63 GLN 63 1000 1000 GLN GLN A . n A 1 64 THR 64 1001 1001 THR THR A . n A 1 65 THR 65 1002 1002 THR THR A . n A 1 66 HIS 66 1003 1003 HIS HIS A . n A 1 67 ILE 67 1004 1004 ILE ILE A . n A 1 68 THR 68 1005 1005 THR THR A . n A 1 69 TYR 69 1006 1006 TYR TYR A . n A 1 70 PRO 70 1007 1007 PRO PRO A . n A 1 71 ASP 71 1008 1008 ASP ASP A . n A 1 72 GLY 72 1009 1009 GLY GLY A . n A 1 73 MET 73 1010 1010 MET MET A . n A 1 74 GLU 74 1011 1011 GLU GLU A . n A 1 75 VAL 75 1012 1012 VAL VAL A . n A 1 76 LEU 76 1013 1013 LEU LEU A . n A 1 77 GLN 77 1014 1014 GLN GLN A . n A 1 78 PHE 78 1015 1015 PHE PHE A . n A 1 79 PRO 79 1016 1016 PRO PRO A . n A 1 80 ASN 80 1017 1017 ASN ASN A . n A 1 81 ASN 81 1018 1018 ASN ASN A . n A 1 82 GLN 82 1019 1019 GLN GLN A . n A 1 83 THR 83 1020 1020 THR THR A . n A 1 84 GLU 84 1021 1021 GLU GLU A . n A 1 85 LYS 85 1022 1022 LYS LYS A . n A 1 86 HIS 86 1023 1023 HIS HIS A . n A 1 87 PHE 87 1024 1024 PHE PHE A . n A 1 88 PRO 88 1025 1025 PRO PRO A . n A 1 89 ASP 89 1026 1026 ASP ASP A . n A 1 90 GLY 90 1027 1027 GLY GLY A . n A 1 91 ARG 91 1028 1028 ARG ARG A . n A 1 92 LYS 92 1029 1029 LYS LYS A . n A 1 93 GLU 93 1030 1030 GLU GLU A . n A 1 94 ILE 94 1031 1031 ILE ILE A . n A 1 95 THR 95 1032 1032 THR THR A . n A 1 96 PHE 96 1033 1033 PHE PHE A . n A 1 97 PRO 97 1034 1034 PRO PRO A . n A 1 98 ASP 98 1035 1035 ASP ASP A . n A 1 99 GLN 99 1036 1036 GLN GLN A . n A 1 100 THR 100 1037 1037 THR THR A . n A 1 101 VAL 101 1038 1038 VAL VAL A . n A 1 102 LYS 102 1039 1039 LYS LYS A . n A 1 103 THR 103 1040 1040 THR THR A . n A 1 104 LEU 104 1041 1041 LEU LEU A . n A 1 105 HIS 105 1042 1042 HIS HIS A . n A 1 106 PRO 106 1043 1043 PRO PRO A . n A 1 107 ASP 107 1044 1044 ASP ASP A . n A 1 108 GLY 108 1045 1045 GLY GLY A . n A 1 109 ARG 109 1046 1046 ARG ARG A . n A 1 110 GLU 110 1047 1047 GLU GLU A . n A 1 111 GLU 111 1048 1048 GLU GLU A . n A 1 112 SER 112 1049 1049 SER SER A . n A 1 113 VAL 113 1050 1050 VAL VAL A . n A 1 114 LEU 114 1051 1051 LEU LEU A . n A 1 115 THR 115 1052 1052 THR THR A . n A 1 116 ASP 116 1053 1053 ASP ASP A . n A 1 117 GLY 117 1054 1054 GLY GLY A . n A 1 118 THR 118 1055 1055 THR THR A . n A 1 119 ILE 119 1056 1056 ILE ILE A . n A 1 120 ILE 120 1057 1057 ILE ILE A . n A 1 121 GLN 121 1058 1058 GLN GLN A . n A 1 122 LEU 122 1059 1059 LEU LEU A . n A 1 123 ASN 123 1060 1060 ASN ASN A . n A 1 124 PRO 124 1061 1061 PRO PRO A . n A 1 125 ASP 125 1062 1062 ASP ASP A . n A 1 126 GLY 126 1063 1063 GLY GLY A . n A 1 127 SER 127 1064 1064 SER SER A . n A 1 128 LYS 128 1065 1065 LYS LYS A . n A 1 129 VAL 129 1066 1066 VAL VAL A . n A 1 130 ILE 130 1067 1067 ILE ILE A . n A 1 131 GLN 131 1068 1068 GLN GLN A . n A 1 132 PHE 132 1069 1069 PHE PHE A . n A 1 133 ASN 133 1070 1070 ASN ASN A . n A 1 134 THR 134 1071 1071 THR THR A . n A 1 135 GLY 135 1072 1072 GLY GLY A . n A 1 136 GLN 136 1073 1073 GLN GLN A . n A 1 137 ARG 137 1074 1074 ARG ARG A . n A 1 138 GLU 138 1075 1075 GLU GLU A . n A 1 139 ILE 139 1076 1076 ILE ILE A . n A 1 140 HIS 140 1077 1077 HIS HIS A . n A 1 141 THR 141 1078 1078 THR THR A . n A 1 142 ALA 142 1079 1079 ALA ALA A . n A 1 143 ASP 143 1080 1080 ASP ASP A . n A 1 144 PHE 144 1081 1081 PHE PHE A . n A 1 145 LYS 145 1082 1082 LYS LYS A . n A 1 146 ARG 146 1083 1083 ARG ARG A . n A 1 147 ARG 147 1084 1084 ARG ARG A . n A 1 148 GLU 148 1085 1085 GLU GLU A . n A 1 149 TYR 149 1086 1086 TYR TYR A . n A 1 150 PRO 150 1087 1087 PRO PRO A . n A 1 151 ASP 151 1088 1088 ASP ASP A . n A 1 152 GLY 152 1089 1089 GLY GLY A . n A 1 153 THR 153 1090 1090 THR THR A . n A 1 154 VAL 154 1091 1091 VAL VAL A . n A 1 155 LYS 155 1092 1092 LYS LYS A . n A 1 156 THR 156 1093 1093 THR THR A . n A 1 157 VAL 157 1094 1094 VAL VAL A . n A 1 158 TYR 158 1095 1095 TYR TYR A . n A 1 159 SER 159 1096 1096 SER SER A . n A 1 160 ASP 160 1097 1097 ASP ASP A . n A 1 161 GLY 161 1098 1098 GLY GLY A . n A 1 162 ARG 162 1099 1099 ARG ARG A . n A 1 163 GLN 163 1100 1100 GLN GLN A . n A 1 164 GLU 164 1101 1101 GLU GLU A . n A 1 165 THR 165 1102 1102 THR THR A . n A 1 166 GLN 166 1103 1103 GLN GLN A . n A 1 167 TYR 167 1104 1104 TYR TYR A . n A 1 168 PRO 168 1105 1105 PRO PRO A . n A 1 169 THR 169 1106 1106 THR THR A . n A 1 170 GLY 170 1107 ? ? ? A . n A 1 171 ARG 171 1108 ? ? ? A . n A 1 172 VAL 172 1109 ? ? ? A . n A 1 173 ARG 173 1110 ? ? ? A . n A 1 174 LEU 174 1111 ? ? ? A . n A 1 175 LYS 175 1112 ? ? ? A . n A 1 176 ASP 176 1113 ? ? ? A . n A 1 177 PRO 177 1114 ? ? ? A . n A 1 178 GLN 178 1115 ? ? ? A . n A 1 179 GLY 179 1116 ? ? ? A . n A 1 180 LYS 180 1117 ? ? ? A . n A 1 181 VAL 181 1118 ? ? ? A . n A 1 182 ILE 182 1119 ? ? ? A . n A 1 183 MET 183 1120 ? ? ? A . n A 1 184 ASP 184 1121 ? ? ? A . n # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details monomeric _pdbx_struct_assembly.oligomeric_count 1 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G # _pdbx_struct_oper_list.id 1 _pdbx_struct_oper_list.type 'identity operation' _pdbx_struct_oper_list.name 1_555 _pdbx_struct_oper_list.symmetry_operation x,y,z _pdbx_struct_oper_list.matrix[1][1] 1.0000000000 _pdbx_struct_oper_list.matrix[1][2] 0.0000000000 _pdbx_struct_oper_list.matrix[1][3] 0.0000000000 _pdbx_struct_oper_list.vector[1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][1] 0.0000000000 _pdbx_struct_oper_list.matrix[2][2] 1.0000000000 _pdbx_struct_oper_list.matrix[2][3] 0.0000000000 _pdbx_struct_oper_list.vector[2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][1] 0.0000000000 _pdbx_struct_oper_list.matrix[3][2] 0.0000000000 _pdbx_struct_oper_list.matrix[3][3] 1.0000000000 _pdbx_struct_oper_list.vector[3] 0.0000000000 # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-09-04 2 'Structure model' 1 1 2013-10-16 3 'Structure model' 1 2 2013-12-18 4 'Structure model' 1 3 2014-02-05 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # loop_ _pdbx_audit_revision_group.ordinal _pdbx_audit_revision_group.revision_ordinal _pdbx_audit_revision_group.data_content_type _pdbx_audit_revision_group.group 1 2 'Structure model' 'Database references' 2 3 'Structure model' 'Database references' 3 4 'Structure model' 'Database references' # loop_ _software.name _software.classification _software.version _software.citation_id _software.pdbx_ordinal XDS 'data scaling' . ? 1 PHENIX 'model building' AUTOSOL ? 2 PHENIX refinement '(phenix.refine: 1.8.2_1309)' ? 3 XDS 'data reduction' . ? 4 Aimless 'data scaling' . ? 5 PHENIX phasing AUTOSOL ? 6 # loop_ _pdbx_validate_close_contact.id _pdbx_validate_close_contact.PDB_model_num _pdbx_validate_close_contact.auth_atom_id_1 _pdbx_validate_close_contact.auth_asym_id_1 _pdbx_validate_close_contact.auth_comp_id_1 _pdbx_validate_close_contact.auth_seq_id_1 _pdbx_validate_close_contact.PDB_ins_code_1 _pdbx_validate_close_contact.label_alt_id_1 _pdbx_validate_close_contact.auth_atom_id_2 _pdbx_validate_close_contact.auth_asym_id_2 _pdbx_validate_close_contact.auth_comp_id_2 _pdbx_validate_close_contact.auth_seq_id_2 _pdbx_validate_close_contact.PDB_ins_code_2 _pdbx_validate_close_contact.label_alt_id_2 _pdbx_validate_close_contact.dist 1 1 HH11 A ARG 1084 ? ? O A HOH 1478 ? ? 1.46 2 1 H A LEU 950 ? ? O A HOH 1474 ? ? 1.50 3 1 O A HOH 1301 ? ? O A HOH 1445 ? ? 1.92 4 1 O A HOH 1428 ? ? O A HOH 1463 ? ? 1.93 5 1 O A HOH 1423 ? ? O A HOH 1442 ? ? 1.98 6 1 N A LEU 950 ? ? O A HOH 1474 ? ? 2.02 7 1 NZ A LYS 1022 ? ? O A HOH 1491 ? ? 2.02 8 1 O A HOH 1446 ? ? O A HOH 1448 ? ? 2.03 9 1 O3 A NO3 1205 ? ? O A HOH 1439 ? ? 2.04 10 1 NZ A LYS 1082 ? ? O A HOH 1463 ? ? 2.04 11 1 O1 A NO3 1201 ? ? O A HOH 1439 ? ? 2.06 12 1 O A HOH 1477 ? ? O A HOH 1486 ? ? 2.12 13 1 O A HOH 1432 ? ? O A HOH 1451 ? ? 2.13 14 1 NH1 A ARG 1084 ? ? O A HOH 1478 ? ? 2.16 15 1 O A HOH 1338 ? ? O A HOH 1468 ? ? 2.16 16 1 O A HOH 1452 ? ? O A HOH 1457 ? ? 2.17 17 1 O A HOH 1475 ? ? O A HOH 1493 ? ? 2.17 # loop_ _pdbx_validate_symm_contact.id _pdbx_validate_symm_contact.PDB_model_num _pdbx_validate_symm_contact.auth_atom_id_1 _pdbx_validate_symm_contact.auth_asym_id_1 _pdbx_validate_symm_contact.auth_comp_id_1 _pdbx_validate_symm_contact.auth_seq_id_1 _pdbx_validate_symm_contact.PDB_ins_code_1 _pdbx_validate_symm_contact.label_alt_id_1 _pdbx_validate_symm_contact.site_symmetry_1 _pdbx_validate_symm_contact.auth_atom_id_2 _pdbx_validate_symm_contact.auth_asym_id_2 _pdbx_validate_symm_contact.auth_comp_id_2 _pdbx_validate_symm_contact.auth_seq_id_2 _pdbx_validate_symm_contact.PDB_ins_code_2 _pdbx_validate_symm_contact.label_alt_id_2 _pdbx_validate_symm_contact.site_symmetry_2 _pdbx_validate_symm_contact.dist 1 1 O A HOH 1487 ? ? 1_555 O A HOH 1490 ? ? 2_445 2.06 2 1 NZ A LYS 1022 ? ? 1_555 O A HOH 1405 ? ? 2_445 2.17 # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 GLN A 990 ? ? 83.17 0.82 2 1 ASN A 1018 ? A 84.97 4.42 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A GLY 938 ? A GLY 1 2 1 Y 1 A PRO 939 ? A PRO 2 3 1 Y 1 A LEU 940 ? A LEU 3 4 1 Y 1 A GLY 941 ? A GLY 4 5 1 Y 1 A SER 942 ? A SER 5 6 1 Y 1 A ASP 943 ? A ASP 6 7 1 Y 1 A SER 944 ? A SER 7 8 1 Y 1 A LYS 945 ? A LYS 8 9 1 Y 1 A ILE 946 ? A ILE 9 10 1 Y 1 A GLU 947 ? A GLU 10 11 1 Y 1 A LYS 948 ? A LYS 11 12 1 Y 1 A MET 949 ? A MET 12 13 1 Y 1 A GLY 1107 ? A GLY 170 14 1 Y 1 A ARG 1108 ? A ARG 171 15 1 Y 1 A VAL 1109 ? A VAL 172 16 1 Y 1 A ARG 1110 ? A ARG 173 17 1 Y 1 A LEU 1111 ? A LEU 174 18 1 Y 1 A LYS 1112 ? A LYS 175 19 1 Y 1 A ASP 1113 ? A ASP 176 20 1 Y 1 A PRO 1114 ? A PRO 177 21 1 Y 1 A GLN 1115 ? A GLN 178 22 1 Y 1 A GLY 1116 ? A GLY 179 23 1 Y 1 A LYS 1117 ? A LYS 180 24 1 Y 1 A VAL 1118 ? A VAL 181 25 1 Y 1 A ILE 1119 ? A ILE 182 26 1 Y 1 A MET 1120 ? A MET 183 27 1 Y 1 A ASP 1121 ? A ASP 184 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'NITRATE ION' NO3 3 'TRIETHYLENE GLYCOL' PGE 4 'TETRAETHYLENE GLYCOL' PG4 5 '(4S)-2-METHYL-2,4-PENTANEDIOL' MPD 6 water HOH # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 NO3 1 1201 1 NO3 NO3 A . C 3 PGE 1 1202 1 PGE PGE A . D 4 PG4 1 1203 1 PG4 PG4 A . E 5 MPD 1 1204 1 MPD MPD A . F 2 NO3 1 1205 1 NO3 NO3 A . G 6 HOH 1 1301 1 HOH HOH A . G 6 HOH 2 1302 2 HOH HOH A . G 6 HOH 3 1303 3 HOH HOH A . G 6 HOH 4 1304 4 HOH HOH A . G 6 HOH 5 1305 5 HOH HOH A . G 6 HOH 6 1306 6 HOH HOH A . G 6 HOH 7 1307 7 HOH HOH A . G 6 HOH 8 1308 8 HOH HOH A . G 6 HOH 9 1309 9 HOH HOH A . G 6 HOH 10 1310 10 HOH HOH A . G 6 HOH 11 1311 11 HOH HOH A . G 6 HOH 12 1312 12 HOH HOH A . G 6 HOH 13 1313 13 HOH HOH A . G 6 HOH 14 1314 14 HOH HOH A . G 6 HOH 15 1315 15 HOH HOH A . G 6 HOH 16 1316 16 HOH HOH A . G 6 HOH 17 1317 17 HOH HOH A . G 6 HOH 18 1318 18 HOH HOH A . G 6 HOH 19 1319 19 HOH HOH A . G 6 HOH 20 1320 20 HOH HOH A . G 6 HOH 21 1321 21 HOH HOH A . G 6 HOH 22 1322 22 HOH HOH A . G 6 HOH 23 1323 23 HOH HOH A . G 6 HOH 24 1324 24 HOH HOH A . G 6 HOH 25 1325 25 HOH HOH A . G 6 HOH 26 1326 26 HOH HOH A . G 6 HOH 27 1327 27 HOH HOH A . G 6 HOH 28 1328 28 HOH HOH A . G 6 HOH 29 1329 29 HOH HOH A . G 6 HOH 30 1330 30 HOH HOH A . G 6 HOH 31 1331 31 HOH HOH A . G 6 HOH 32 1332 32 HOH HOH A . G 6 HOH 33 1333 33 HOH HOH A . G 6 HOH 34 1334 34 HOH HOH A . G 6 HOH 35 1335 35 HOH HOH A . G 6 HOH 36 1336 36 HOH HOH A . G 6 HOH 37 1337 37 HOH HOH A . G 6 HOH 38 1338 38 HOH HOH A . G 6 HOH 39 1339 39 HOH HOH A . G 6 HOH 40 1340 40 HOH HOH A . G 6 HOH 41 1341 41 HOH HOH A . G 6 HOH 42 1342 42 HOH HOH A . G 6 HOH 43 1343 43 HOH HOH A . G 6 HOH 44 1344 44 HOH HOH A . G 6 HOH 45 1345 45 HOH HOH A . G 6 HOH 46 1346 46 HOH HOH A . G 6 HOH 47 1347 47 HOH HOH A . G 6 HOH 48 1348 48 HOH HOH A . G 6 HOH 49 1349 49 HOH HOH A . G 6 HOH 50 1350 50 HOH HOH A . G 6 HOH 51 1351 51 HOH HOH A . G 6 HOH 52 1352 52 HOH HOH A . G 6 HOH 53 1353 53 HOH HOH A . G 6 HOH 54 1354 54 HOH HOH A . G 6 HOH 55 1355 55 HOH HOH A . G 6 HOH 56 1356 56 HOH HOH A . G 6 HOH 57 1357 57 HOH HOH A . G 6 HOH 58 1358 58 HOH HOH A . G 6 HOH 59 1359 59 HOH HOH A . G 6 HOH 60 1360 60 HOH HOH A . G 6 HOH 61 1361 61 HOH HOH A . G 6 HOH 62 1362 62 HOH HOH A . G 6 HOH 63 1363 63 HOH HOH A . G 6 HOH 64 1364 64 HOH HOH A . G 6 HOH 65 1365 65 HOH HOH A . G 6 HOH 66 1366 66 HOH HOH A . G 6 HOH 67 1367 67 HOH HOH A . G 6 HOH 68 1368 68 HOH HOH A . G 6 HOH 69 1369 69 HOH HOH A . G 6 HOH 70 1370 70 HOH HOH A . G 6 HOH 71 1371 71 HOH HOH A . G 6 HOH 72 1372 72 HOH HOH A . G 6 HOH 73 1373 73 HOH HOH A . G 6 HOH 74 1374 74 HOH HOH A . G 6 HOH 75 1375 75 HOH HOH A . G 6 HOH 76 1376 76 HOH HOH A . G 6 HOH 77 1377 77 HOH HOH A . G 6 HOH 78 1378 78 HOH HOH A . G 6 HOH 79 1379 79 HOH HOH A . G 6 HOH 80 1380 80 HOH HOH A . G 6 HOH 81 1381 81 HOH HOH A . G 6 HOH 82 1382 82 HOH HOH A . G 6 HOH 83 1383 83 HOH HOH A . G 6 HOH 84 1384 84 HOH HOH A . G 6 HOH 85 1385 85 HOH HOH A . G 6 HOH 86 1386 86 HOH HOH A . G 6 HOH 87 1387 87 HOH HOH A . G 6 HOH 88 1388 88 HOH HOH A . G 6 HOH 89 1389 89 HOH HOH A . G 6 HOH 90 1390 90 HOH HOH A . G 6 HOH 91 1391 91 HOH HOH A . G 6 HOH 92 1392 92 HOH HOH A . G 6 HOH 93 1393 93 HOH HOH A . G 6 HOH 94 1394 94 HOH HOH A . G 6 HOH 95 1395 95 HOH HOH A . G 6 HOH 96 1396 96 HOH HOH A . G 6 HOH 97 1397 97 HOH HOH A . G 6 HOH 98 1398 98 HOH HOH A . G 6 HOH 99 1399 99 HOH HOH A . G 6 HOH 100 1400 100 HOH HOH A . G 6 HOH 101 1401 101 HOH HOH A . G 6 HOH 102 1402 102 HOH HOH A . G 6 HOH 103 1403 103 HOH HOH A . G 6 HOH 104 1404 104 HOH HOH A . G 6 HOH 105 1405 105 HOH HOH A . G 6 HOH 106 1406 106 HOH HOH A . G 6 HOH 107 1407 107 HOH HOH A . G 6 HOH 108 1408 108 HOH HOH A . G 6 HOH 109 1409 109 HOH HOH A . G 6 HOH 110 1410 110 HOH HOH A . G 6 HOH 111 1411 111 HOH HOH A . G 6 HOH 112 1412 112 HOH HOH A . G 6 HOH 113 1413 113 HOH HOH A . G 6 HOH 114 1414 114 HOH HOH A . G 6 HOH 115 1415 115 HOH HOH A . G 6 HOH 116 1416 116 HOH HOH A . G 6 HOH 117 1417 117 HOH HOH A . G 6 HOH 118 1418 118 HOH HOH A . G 6 HOH 119 1419 119 HOH HOH A . G 6 HOH 120 1420 120 HOH HOH A . G 6 HOH 121 1421 121 HOH HOH A . G 6 HOH 122 1422 122 HOH HOH A . G 6 HOH 123 1423 123 HOH HOH A . G 6 HOH 124 1424 124 HOH HOH A . G 6 HOH 125 1425 125 HOH HOH A . G 6 HOH 126 1426 126 HOH HOH A . G 6 HOH 127 1427 127 HOH HOH A . G 6 HOH 128 1428 128 HOH HOH A . G 6 HOH 129 1429 129 HOH HOH A . G 6 HOH 130 1430 130 HOH HOH A . G 6 HOH 131 1431 131 HOH HOH A . G 6 HOH 132 1432 132 HOH HOH A . G 6 HOH 133 1433 133 HOH HOH A . G 6 HOH 134 1434 134 HOH HOH A . G 6 HOH 135 1435 135 HOH HOH A . G 6 HOH 136 1436 136 HOH HOH A . G 6 HOH 137 1437 137 HOH HOH A . G 6 HOH 138 1438 138 HOH HOH A . G 6 HOH 139 1439 139 HOH HOH A . G 6 HOH 140 1440 140 HOH HOH A . G 6 HOH 141 1441 141 HOH HOH A . G 6 HOH 142 1442 142 HOH HOH A . G 6 HOH 143 1443 143 HOH HOH A . G 6 HOH 144 1444 144 HOH HOH A . G 6 HOH 145 1445 145 HOH HOH A . G 6 HOH 146 1446 146 HOH HOH A . G 6 HOH 147 1447 147 HOH HOH A . G 6 HOH 148 1448 148 HOH HOH A . G 6 HOH 149 1449 149 HOH HOH A . G 6 HOH 150 1450 150 HOH HOH A . G 6 HOH 151 1451 151 HOH HOH A . G 6 HOH 152 1452 152 HOH HOH A . G 6 HOH 153 1453 153 HOH HOH A . G 6 HOH 154 1454 154 HOH HOH A . G 6 HOH 155 1455 155 HOH HOH A . G 6 HOH 156 1456 156 HOH HOH A . G 6 HOH 157 1457 157 HOH HOH A . G 6 HOH 158 1458 158 HOH HOH A . G 6 HOH 159 1459 159 HOH HOH A . G 6 HOH 160 1460 160 HOH HOH A . G 6 HOH 161 1461 161 HOH HOH A . G 6 HOH 162 1462 162 HOH HOH A . G 6 HOH 163 1463 163 HOH HOH A . G 6 HOH 164 1464 164 HOH HOH A . G 6 HOH 165 1465 165 HOH HOH A . G 6 HOH 166 1466 166 HOH HOH A . G 6 HOH 167 1467 167 HOH HOH A . G 6 HOH 168 1468 168 HOH HOH A . G 6 HOH 169 1469 169 HOH HOH A . G 6 HOH 170 1470 170 HOH HOH A . G 6 HOH 171 1471 171 HOH HOH A . G 6 HOH 172 1472 172 HOH HOH A . G 6 HOH 173 1473 173 HOH HOH A . G 6 HOH 174 1474 174 HOH HOH A . G 6 HOH 175 1475 175 HOH HOH A . G 6 HOH 176 1476 176 HOH HOH A . G 6 HOH 177 1477 177 HOH HOH A . G 6 HOH 178 1478 178 HOH HOH A . G 6 HOH 179 1479 179 HOH HOH A . G 6 HOH 180 1480 180 HOH HOH A . G 6 HOH 181 1481 181 HOH HOH A . G 6 HOH 182 1482 182 HOH HOH A . G 6 HOH 183 1483 183 HOH HOH A . G 6 HOH 184 1484 184 HOH HOH A . G 6 HOH 185 1485 185 HOH HOH A . G 6 HOH 186 1486 186 HOH HOH A . G 6 HOH 187 1487 187 HOH HOH A . G 6 HOH 188 1488 188 HOH HOH A . G 6 HOH 189 1489 189 HOH HOH A . G 6 HOH 190 1490 190 HOH HOH A . G 6 HOH 191 1491 191 HOH HOH A . G 6 HOH 192 1492 192 HOH HOH A . G 6 HOH 193 1493 193 HOH HOH A . G 6 HOH 194 1494 194 HOH HOH A . G 6 HOH 195 1495 195 HOH HOH A . G 6 HOH 196 1496 196 HOH HOH A . G 6 HOH 197 1497 197 HOH HOH A . G 6 HOH 198 1498 198 HOH HOH A . G 6 HOH 199 1499 199 HOH HOH A . G 6 HOH 200 1500 200 HOH HOH A . G 6 HOH 201 1501 201 HOH HOH A . G 6 HOH 202 1502 202 HOH HOH A . G 6 HOH 203 1503 203 HOH HOH A . G 6 HOH 204 1504 204 HOH HOH A . #