data_4LDN # _entry.id 4LDN # _audit_conform.dict_name mmcif_pdbx.dic _audit_conform.dict_version 5.287 _audit_conform.dict_location http://mmcif.pdb.org/dictionaries/ascii/mmcif_pdbx.dic # loop_ _database_2.database_id _database_2.database_code PDB 4LDN RCSB RCSB080497 WWPDB D_1000080497 # _pdbx_database_related.db_name TargetTrack _pdbx_database_related.db_id NYSGRC-029521 _pdbx_database_related.details . _pdbx_database_related.content_type unspecified # _pdbx_database_status.entry_id 4LDN _pdbx_database_status.status_code REL _pdbx_database_status.deposit_site RCSB _pdbx_database_status.process_site RCSB _pdbx_database_status.recvd_initial_deposition_date 2013-06-24 _pdbx_database_status.status_code_sf REL _pdbx_database_status.status_code_mr ? _pdbx_database_status.SG_entry Y _pdbx_database_status.status_code_cs ? _pdbx_database_status.methods_development_category ? _pdbx_database_status.pdb_format_compatible Y # loop_ _audit_author.name _audit_author.pdbx_ordinal 'Sampathkumar, P.' 1 'Almo, S.C.' 2 'New York Structural Genomics Research Consortium (NYSGRC)' 3 # _citation.id primary _citation.title 'Crystal structure of a putative purine nucleoside phosphorylase from Vibrio fischeri ES114 (Target NYSGRC-029521)' _citation.journal_abbrev 'to be published' _citation.journal_volume ? _citation.page_first ? _citation.page_last ? _citation.year ? _citation.journal_id_ASTM ? _citation.country ? _citation.journal_id_ISSN ? _citation.journal_id_CSD 0353 _citation.book_publisher ? _citation.pdbx_database_id_PubMed ? _citation.pdbx_database_id_DOI ? # loop_ _citation_author.citation_id _citation_author.name _citation_author.ordinal primary 'Sampathkumar, P.' 1 primary 'Ahmed, M.' 2 primary 'Attonito, J.' 3 primary 'Bhosle, R.' 4 primary 'Bonanno, J.' 5 primary 'Chamala, S.' 6 primary 'Chowdhury, S.' 7 primary 'Eromenok, G.' 8 primary 'Fiser, A.' 9 primary 'Glenn, A.S.' 10 primary 'Hammonds, J.' 11 primary 'Himmel, D.M.' 12 primary 'Hillerich, B.' 13 primary 'Khafizov, K.' 14 primary 'Lafleur, J.' 15 primary 'Love, J.D.' 16 primary 'Stead, M.' 17 primary 'Seidel, R.' 18 primary 'Toro, R.' 19 primary 'Morisco, L.L.' 20 primary 'Sojitra, S.S.' 21 primary 'Wasserman, S.R.' 22 primary 'Suarez, J.' 23 primary 'Schramm, V.L.' 24 primary 'Almo, S.C.' 25 # _cell.length_a 163.115 _cell.length_b 163.115 _cell.length_c 45.339 _cell.angle_alpha 90.000 _cell.angle_beta 90.000 _cell.angle_gamma 120.000 _cell.entry_id 4LDN _cell.pdbx_unique_axis ? _cell.Z_PDB 18 _cell.length_a_esd ? _cell.length_b_esd ? _cell.length_c_esd ? _cell.angle_alpha_esd ? _cell.angle_beta_esd ? _cell.angle_gamma_esd ? # _symmetry.space_group_name_H-M 'H 3 2' _symmetry.entry_id 4LDN _symmetry.pdbx_full_space_group_name_H-M ? _symmetry.Int_Tables_number 155 _symmetry.cell_setting ? _symmetry.space_group_name_Hall ? # loop_ _entity.id _entity.type _entity.src_method _entity.pdbx_description _entity.formula_weight _entity.pdbx_number_of_molecules _entity.pdbx_ec _entity.pdbx_mutation _entity.pdbx_fragment _entity.details 1 polymer man 'Purine nucleoside phosphorylase DeoD-type' 29741.729 1 2.4.2.1 ? ? ? 2 non-polymer syn 'PHOSPHATE ION' 94.971 2 ? ? ? ? 3 non-polymer syn 1,2-ETHANEDIOL 62.068 5 ? ? ? ? 4 water nat water 18.015 164 ? ? ? ? # _entity_name_com.entity_id 1 _entity_name_com.name PNP # _entity_poly.entity_id 1 _entity_poly.type 'polypeptide(L)' _entity_poly.nstd_linkage no _entity_poly.nstd_monomer yes _entity_poly.pdbx_seq_one_letter_code ;(MSE)HHHHHHSSGVDLGTENLYFQS(MSE)STPHINAPLDAFADTIL(MSE)PGDPLRAKLIAETYLENVVQVTDVRG (MSE)LGFTGEFKGRKISV(MSE)GHG(MSE)GAPSASIYFHEL(MSE)TTYKVKNFIRIGSCGAIHDDVKLKDLIVAIG ASTDSK(MSE)NRIRFKDNDFAATANYN(MSE)LSECVNTLKTTDINYLVGNVFSSDLFYRPDEEQYD(MSE)(MSE)AR YGILGVE(MSE)EVNALYSAAAENHCNAVALCTVTDHIKNHEHLTADERRTELHE(MSE)INVALDVALKLPTE ; _entity_poly.pdbx_seq_one_letter_code_can ;MHHHHHHSSGVDLGTENLYFQSMSTPHINAPLDAFADTILMPGDPLRAKLIAETYLENVVQVTDVRGMLGFTGEFKGRKI SVMGHGMGAPSASIYFHELMTTYKVKNFIRIGSCGAIHDDVKLKDLIVAIGASTDSKMNRIRFKDNDFAATANYNMLSEC VNTLKTTDINYLVGNVFSSDLFYRPDEEQYDMMARYGILGVEMEVNALYSAAAENHCNAVALCTVTDHIKNHEHLTADER RTELHEMINVALDVALKLPTE ; _entity_poly.pdbx_strand_id A _entity_poly.pdbx_target_identifier NYSGRC-029521 # loop_ _entity_poly_seq.entity_id _entity_poly_seq.num _entity_poly_seq.mon_id _entity_poly_seq.hetero 1 1 MSE n 1 2 HIS n 1 3 HIS n 1 4 HIS n 1 5 HIS n 1 6 HIS n 1 7 HIS n 1 8 SER n 1 9 SER n 1 10 GLY n 1 11 VAL n 1 12 ASP n 1 13 LEU n 1 14 GLY n 1 15 THR n 1 16 GLU n 1 17 ASN n 1 18 LEU n 1 19 TYR n 1 20 PHE n 1 21 GLN n 1 22 SER n 1 23 MSE n 1 24 SER n 1 25 THR n 1 26 PRO n 1 27 HIS n 1 28 ILE n 1 29 ASN n 1 30 ALA n 1 31 PRO n 1 32 LEU n 1 33 ASP n 1 34 ALA n 1 35 PHE n 1 36 ALA n 1 37 ASP n 1 38 THR n 1 39 ILE n 1 40 LEU n 1 41 MSE n 1 42 PRO n 1 43 GLY n 1 44 ASP n 1 45 PRO n 1 46 LEU n 1 47 ARG n 1 48 ALA n 1 49 LYS n 1 50 LEU n 1 51 ILE n 1 52 ALA n 1 53 GLU n 1 54 THR n 1 55 TYR n 1 56 LEU n 1 57 GLU n 1 58 ASN n 1 59 VAL n 1 60 VAL n 1 61 GLN n 1 62 VAL n 1 63 THR n 1 64 ASP n 1 65 VAL n 1 66 ARG n 1 67 GLY n 1 68 MSE n 1 69 LEU n 1 70 GLY n 1 71 PHE n 1 72 THR n 1 73 GLY n 1 74 GLU n 1 75 PHE n 1 76 LYS n 1 77 GLY n 1 78 ARG n 1 79 LYS n 1 80 ILE n 1 81 SER n 1 82 VAL n 1 83 MSE n 1 84 GLY n 1 85 HIS n 1 86 GLY n 1 87 MSE n 1 88 GLY n 1 89 ALA n 1 90 PRO n 1 91 SER n 1 92 ALA n 1 93 SER n 1 94 ILE n 1 95 TYR n 1 96 PHE n 1 97 HIS n 1 98 GLU n 1 99 LEU n 1 100 MSE n 1 101 THR n 1 102 THR n 1 103 TYR n 1 104 LYS n 1 105 VAL n 1 106 LYS n 1 107 ASN n 1 108 PHE n 1 109 ILE n 1 110 ARG n 1 111 ILE n 1 112 GLY n 1 113 SER n 1 114 CYS n 1 115 GLY n 1 116 ALA n 1 117 ILE n 1 118 HIS n 1 119 ASP n 1 120 ASP n 1 121 VAL n 1 122 LYS n 1 123 LEU n 1 124 LYS n 1 125 ASP n 1 126 LEU n 1 127 ILE n 1 128 VAL n 1 129 ALA n 1 130 ILE n 1 131 GLY n 1 132 ALA n 1 133 SER n 1 134 THR n 1 135 ASP n 1 136 SER n 1 137 LYS n 1 138 MSE n 1 139 ASN n 1 140 ARG n 1 141 ILE n 1 142 ARG n 1 143 PHE n 1 144 LYS n 1 145 ASP n 1 146 ASN n 1 147 ASP n 1 148 PHE n 1 149 ALA n 1 150 ALA n 1 151 THR n 1 152 ALA n 1 153 ASN n 1 154 TYR n 1 155 ASN n 1 156 MSE n 1 157 LEU n 1 158 SER n 1 159 GLU n 1 160 CYS n 1 161 VAL n 1 162 ASN n 1 163 THR n 1 164 LEU n 1 165 LYS n 1 166 THR n 1 167 THR n 1 168 ASP n 1 169 ILE n 1 170 ASN n 1 171 TYR n 1 172 LEU n 1 173 VAL n 1 174 GLY n 1 175 ASN n 1 176 VAL n 1 177 PHE n 1 178 SER n 1 179 SER n 1 180 ASP n 1 181 LEU n 1 182 PHE n 1 183 TYR n 1 184 ARG n 1 185 PRO n 1 186 ASP n 1 187 GLU n 1 188 GLU n 1 189 GLN n 1 190 TYR n 1 191 ASP n 1 192 MSE n 1 193 MSE n 1 194 ALA n 1 195 ARG n 1 196 TYR n 1 197 GLY n 1 198 ILE n 1 199 LEU n 1 200 GLY n 1 201 VAL n 1 202 GLU n 1 203 MSE n 1 204 GLU n 1 205 VAL n 1 206 ASN n 1 207 ALA n 1 208 LEU n 1 209 TYR n 1 210 SER n 1 211 ALA n 1 212 ALA n 1 213 ALA n 1 214 GLU n 1 215 ASN n 1 216 HIS n 1 217 CYS n 1 218 ASN n 1 219 ALA n 1 220 VAL n 1 221 ALA n 1 222 LEU n 1 223 CYS n 1 224 THR n 1 225 VAL n 1 226 THR n 1 227 ASP n 1 228 HIS n 1 229 ILE n 1 230 LYS n 1 231 ASN n 1 232 HIS n 1 233 GLU n 1 234 HIS n 1 235 LEU n 1 236 THR n 1 237 ALA n 1 238 ASP n 1 239 GLU n 1 240 ARG n 1 241 ARG n 1 242 THR n 1 243 GLU n 1 244 LEU n 1 245 HIS n 1 246 GLU n 1 247 MSE n 1 248 ILE n 1 249 ASN n 1 250 VAL n 1 251 ALA n 1 252 LEU n 1 253 ASP n 1 254 VAL n 1 255 ALA n 1 256 LEU n 1 257 LYS n 1 258 LEU n 1 259 PRO n 1 260 THR n 1 261 GLU n # _entity_src_gen.entity_id 1 _entity_src_gen.pdbx_src_id 1 _entity_src_gen.pdbx_alt_source_flag sample _entity_src_gen.pdbx_seq_type ? _entity_src_gen.pdbx_beg_seq_num ? _entity_src_gen.pdbx_end_seq_num ? _entity_src_gen.gene_src_common_name ? _entity_src_gen.gene_src_genus ? _entity_src_gen.pdbx_gene_src_gene 'deoD3, VF_A0968' _entity_src_gen.gene_src_species ? _entity_src_gen.gene_src_strain ES114 _entity_src_gen.gene_src_tissue ? _entity_src_gen.gene_src_tissue_fraction ? _entity_src_gen.gene_src_details ? _entity_src_gen.pdbx_gene_src_fragment ? _entity_src_gen.pdbx_gene_src_scientific_name 'Vibrio fischeri' _entity_src_gen.pdbx_gene_src_ncbi_taxonomy_id 312309 _entity_src_gen.pdbx_gene_src_variant ? _entity_src_gen.pdbx_gene_src_cell_line ? _entity_src_gen.pdbx_gene_src_atcc ? _entity_src_gen.pdbx_gene_src_organ ? _entity_src_gen.pdbx_gene_src_organelle ? _entity_src_gen.pdbx_gene_src_cell ? _entity_src_gen.pdbx_gene_src_cellular_location ? _entity_src_gen.host_org_common_name ? _entity_src_gen.pdbx_host_org_scientific_name 'Escherichia coli' _entity_src_gen.pdbx_host_org_ncbi_taxonomy_id 469008 _entity_src_gen.host_org_genus ? _entity_src_gen.pdbx_host_org_gene ? _entity_src_gen.pdbx_host_org_organ ? _entity_src_gen.host_org_species ? _entity_src_gen.pdbx_host_org_tissue ? _entity_src_gen.pdbx_host_org_tissue_fraction ? _entity_src_gen.pdbx_host_org_strain 'BL21(DE3) CodonPlus RIL' _entity_src_gen.pdbx_host_org_variant ? _entity_src_gen.pdbx_host_org_cell_line ? _entity_src_gen.pdbx_host_org_atcc ? _entity_src_gen.pdbx_host_org_culture_collection ? _entity_src_gen.pdbx_host_org_cell ? _entity_src_gen.pdbx_host_org_organelle ? _entity_src_gen.pdbx_host_org_cellular_location ? _entity_src_gen.pdbx_host_org_vector_type plasmid _entity_src_gen.pdbx_host_org_vector ? _entity_src_gen.host_org_details ? _entity_src_gen.expression_system_id ? _entity_src_gen.plasmid_name pSGC-His _entity_src_gen.plasmid_details ? _entity_src_gen.pdbx_description ? # _struct_ref.id 1 _struct_ref.db_name UNP _struct_ref.db_code DEOD3_VIBF1 _struct_ref.pdbx_db_accession Q5DYV8 _struct_ref.entity_id 1 _struct_ref.pdbx_seq_one_letter_code ;MSTPHINAPLDAFADTILMPGDPLRAKLIAETYLENVVQVTDVRGMLGFTGEFKGRKISVMGHGMGAPSASIYFHELMTT YKVKNFIRIGSCGAIHDDVKLKDLIVAIGASTDSKMNRIRFKDNDFAATANYNMLSECVNTLKTTDINYLVGNVFSSDLF YRPDEEQYDMMARYGILGVEMEVNALYSAAAENHCNAVALCTVTDHIKNHEHLTADERRTELHEMINVALDVALKLPTE ; _struct_ref.pdbx_align_begin 1 _struct_ref.pdbx_db_isoform ? # _struct_ref_seq.align_id 1 _struct_ref_seq.ref_id 1 _struct_ref_seq.pdbx_PDB_id_code 4LDN _struct_ref_seq.pdbx_strand_id A _struct_ref_seq.seq_align_beg 23 _struct_ref_seq.pdbx_seq_align_beg_ins_code ? _struct_ref_seq.seq_align_end 261 _struct_ref_seq.pdbx_seq_align_end_ins_code ? _struct_ref_seq.pdbx_db_accession Q5DYV8 _struct_ref_seq.db_align_beg 1 _struct_ref_seq.pdbx_db_align_beg_ins_code ? _struct_ref_seq.db_align_end 239 _struct_ref_seq.pdbx_db_align_end_ins_code ? _struct_ref_seq.pdbx_auth_seq_align_beg 1 _struct_ref_seq.pdbx_auth_seq_align_end 239 # loop_ _struct_ref_seq_dif.align_id _struct_ref_seq_dif.pdbx_pdb_id_code _struct_ref_seq_dif.mon_id _struct_ref_seq_dif.pdbx_pdb_strand_id _struct_ref_seq_dif.seq_num _struct_ref_seq_dif.pdbx_pdb_ins_code _struct_ref_seq_dif.pdbx_seq_db_name _struct_ref_seq_dif.pdbx_seq_db_accession_code _struct_ref_seq_dif.db_mon_id _struct_ref_seq_dif.pdbx_seq_db_seq_num _struct_ref_seq_dif.details _struct_ref_seq_dif.pdbx_auth_seq_num _struct_ref_seq_dif.pdbx_ordinal 1 4LDN MSE A 1 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -21 1 1 4LDN HIS A 2 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -20 2 1 4LDN HIS A 3 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -19 3 1 4LDN HIS A 4 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -18 4 1 4LDN HIS A 5 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -17 5 1 4LDN HIS A 6 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -16 6 1 4LDN HIS A 7 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -15 7 1 4LDN SER A 8 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -14 8 1 4LDN SER A 9 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -13 9 1 4LDN GLY A 10 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -12 10 1 4LDN VAL A 11 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -11 11 1 4LDN ASP A 12 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -10 12 1 4LDN LEU A 13 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -9 13 1 4LDN GLY A 14 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -8 14 1 4LDN THR A 15 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -7 15 1 4LDN GLU A 16 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -6 16 1 4LDN ASN A 17 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -5 17 1 4LDN LEU A 18 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -4 18 1 4LDN TYR A 19 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -3 19 1 4LDN PHE A 20 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -2 20 1 4LDN GLN A 21 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' -1 21 1 4LDN SER A 22 ? UNP Q5DYV8 ? ? 'EXPRESSION TAG' 0 22 # loop_ _chem_comp.id _chem_comp.type _chem_comp.mon_nstd_flag _chem_comp.name _chem_comp.pdbx_synonyms _chem_comp.formula _chem_comp.formula_weight ALA 'L-peptide linking' y ALANINE ? 'C3 H7 N O2' 89.093 ARG 'L-peptide linking' y ARGININE ? 'C6 H15 N4 O2 1' 175.209 ASN 'L-peptide linking' y ASPARAGINE ? 'C4 H8 N2 O3' 132.118 ASP 'L-peptide linking' y 'ASPARTIC ACID' ? 'C4 H7 N O4' 133.103 CYS 'L-peptide linking' y CYSTEINE ? 'C3 H7 N O2 S' 121.158 EDO non-polymer . 1,2-ETHANEDIOL 'ETHYLENE GLYCOL' 'C2 H6 O2' 62.068 GLN 'L-peptide linking' y GLUTAMINE ? 'C5 H10 N2 O3' 146.144 GLU 'L-peptide linking' y 'GLUTAMIC ACID' ? 'C5 H9 N O4' 147.129 GLY 'peptide linking' y GLYCINE ? 'C2 H5 N O2' 75.067 HIS 'L-peptide linking' y HISTIDINE ? 'C6 H10 N3 O2 1' 156.162 HOH non-polymer . WATER ? 'H2 O' 18.015 ILE 'L-peptide linking' y ISOLEUCINE ? 'C6 H13 N O2' 131.173 LEU 'L-peptide linking' y LEUCINE ? 'C6 H13 N O2' 131.173 LYS 'L-peptide linking' y LYSINE ? 'C6 H15 N2 O2 1' 147.195 MSE 'L-peptide linking' n SELENOMETHIONINE ? 'C5 H11 N O2 Se' 196.106 PHE 'L-peptide linking' y PHENYLALANINE ? 'C9 H11 N O2' 165.189 PO4 non-polymer . 'PHOSPHATE ION' ? 'O4 P -3' 94.971 PRO 'L-peptide linking' y PROLINE ? 'C5 H9 N O2' 115.130 SER 'L-peptide linking' y SERINE ? 'C3 H7 N O3' 105.093 THR 'L-peptide linking' y THREONINE ? 'C4 H9 N O3' 119.119 TYR 'L-peptide linking' y TYROSINE ? 'C9 H11 N O3' 181.189 VAL 'L-peptide linking' y VALINE ? 'C5 H11 N O2' 117.146 # _exptl.crystals_number 1 _exptl.entry_id 4LDN _exptl.method 'X-RAY DIFFRACTION' # _exptl_crystal.id 1 _exptl_crystal.density_Matthews 1.95 _exptl_crystal.density_meas ? _exptl_crystal.density_percent_sol 36.97 _exptl_crystal.description ? _exptl_crystal.F_000 ? _exptl_crystal.preparation ? # _exptl_crystal_grow.crystal_id 1 _exptl_crystal_grow.method 'VAPOR DIFFUSION, SITTING DROP' _exptl_crystal_grow.pH 10.5 _exptl_crystal_grow.temp 298 _exptl_crystal_grow.pdbx_details ;Protein (20mM HEPES pH7.5, 150mM NaCl, 5% glycerol, and 5mM DTT), Reservoir (MCSG2 #05 - 0.2 M Lithium Sulfate, 0.1 M CAPS:NaOH pH 10.5, 1.2 M NaH2PO4/0.8 M K2HPO4), Cryoprotection (33% Ethylene glycol), VAPOR DIFFUSION, SITTING DROP, temperature 298K ; _exptl_crystal_grow.temp_details ? _exptl_crystal_grow.pdbx_pH_range ? # _diffrn.id 1 _diffrn.ambient_temp 100 _diffrn.ambient_temp_details ? _diffrn.crystal_id 1 # _diffrn_detector.diffrn_id 1 _diffrn_detector.detector CCD _diffrn_detector.type 'RAYONIX MX225HE' _diffrn_detector.pdbx_collection_date 2013-04-18 _diffrn_detector.details MIRRORS # _diffrn_radiation.diffrn_id 1 _diffrn_radiation.pdbx_diffrn_protocol 'SINGLE WAVELENGTH' _diffrn_radiation.monochromator 'Diamond(111)' _diffrn_radiation.wavelength_id 1 _diffrn_radiation.pdbx_monochromatic_or_laue_m_l M _diffrn_radiation.pdbx_scattering_type x-ray # _diffrn_radiation_wavelength.id 1 _diffrn_radiation_wavelength.wavelength 0.979310 _diffrn_radiation_wavelength.wt 1.0 # _diffrn_source.diffrn_id 1 _diffrn_source.source SYNCHROTRON _diffrn_source.type 'APS BEAMLINE 31-ID' _diffrn_source.pdbx_wavelength_list 0.979310 _diffrn_source.pdbx_wavelength ? _diffrn_source.pdbx_synchrotron_site APS _diffrn_source.pdbx_synchrotron_beamline 31-ID # _reflns.entry_id 4LDN _reflns.observed_criterion_sigma_F ? _reflns.observed_criterion_sigma_I 0 _reflns.d_resolution_high 1.48 _reflns.d_resolution_low 40.00 _reflns.number_all ? _reflns.number_obs 37977 _reflns.percent_possible_obs 99.7 _reflns.pdbx_Rmerge_I_obs 0.112 _reflns.pdbx_Rsym_value ? _reflns.pdbx_netI_over_sigmaI 23.7 _reflns.B_iso_Wilson_estimate 12.00 _reflns.pdbx_redundancy 14.8 _reflns.R_free_details ? _reflns.limit_h_max ? _reflns.limit_h_min ? _reflns.limit_k_max ? _reflns.limit_k_min ? _reflns.limit_l_max ? _reflns.limit_l_min ? _reflns.observed_criterion_F_max ? _reflns.observed_criterion_F_min ? _reflns.pdbx_chi_squared ? _reflns.pdbx_scaling_rejects ? _reflns.pdbx_ordinal 1 _reflns.pdbx_diffrn_id 1 # _reflns_shell.d_res_high 1.48 _reflns_shell.d_res_low 1.51 _reflns_shell.percent_possible_obs ? _reflns_shell.percent_possible_all 96.8 _reflns_shell.Rmerge_I_obs 0.801 _reflns_shell.meanI_over_sigI_obs 3.7 _reflns_shell.pdbx_Rsym_value ? _reflns_shell.pdbx_redundancy 13.5 _reflns_shell.number_unique_all 1837 _reflns_shell.number_measured_all ? _reflns_shell.number_measured_obs ? _reflns_shell.number_unique_obs ? _reflns_shell.pdbx_chi_squared ? _reflns_shell.pdbx_ordinal 1 _reflns_shell.pdbx_diffrn_id 1 # _refine.entry_id 4LDN _refine.ls_d_res_high 1.4800 _refine.ls_d_res_low 30.8400 _refine.pdbx_ls_sigma_F 0.000 _refine.pdbx_data_cutoff_high_absF ? _refine.pdbx_data_cutoff_low_absF ? _refine.ls_percent_reflns_obs 99.6700 _refine.ls_number_reflns_obs 37970 _refine.ls_number_reflns_all ? _refine.pdbx_ls_cross_valid_method THROUGHOUT _refine.pdbx_R_Free_selection_details RANDOM _refine.details 'HYDROGENS HAVE BEEN ADDED IN THE RIDING POSITIONS U VALUES : REFINED INDIVIDUALLY' _refine.ls_R_factor_all ? _refine.ls_R_factor_obs 0.1636 _refine.ls_R_factor_R_work 0.1624 _refine.ls_wR_factor_R_work ? _refine.ls_R_factor_R_free 0.1870 _refine.ls_wR_factor_R_free ? _refine.ls_percent_reflns_R_free 5.0000 _refine.ls_number_reflns_R_free 1896 _refine.ls_R_factor_R_free_error ? _refine.B_iso_mean 18.3874 _refine.solvent_model_param_bsol ? _refine.solvent_model_param_ksol ? _refine.pdbx_isotropic_thermal_model ? _refine.aniso_B[1][1] -0.6200 _refine.aniso_B[2][2] -0.6200 _refine.aniso_B[3][3] 2.0100 _refine.aniso_B[1][2] -0.6200 _refine.aniso_B[1][3] -0.0000 _refine.aniso_B[2][3] -0.0000 _refine.correlation_coeff_Fo_to_Fc 0.9720 _refine.correlation_coeff_Fo_to_Fc_free 0.9640 _refine.overall_SU_R_Cruickshank_DPI ? _refine.overall_SU_R_free ? _refine.pdbx_overall_ESU_R 0.0690 _refine.pdbx_overall_ESU_R_Free 0.0690 _refine.overall_SU_ML 0.0520 _refine.overall_SU_B 1.4100 _refine.solvent_model_details MASK _refine.pdbx_solvent_vdw_probe_radii 1.4000 _refine.pdbx_solvent_ion_probe_radii 0.8000 _refine.pdbx_solvent_shrinkage_radii 0.8000 _refine.ls_number_parameters ? _refine.ls_number_restraints ? _refine.pdbx_starting_model ? _refine.pdbx_method_to_determine_struct SAD _refine.pdbx_stereochemistry_target_values 'MAXIMUM LIKELIHOOD' _refine.pdbx_stereochem_target_val_spec_case ? _refine.overall_FOM_work_R_set ? _refine.B_iso_max 66.620 _refine.B_iso_min 7.540 _refine.pdbx_overall_phase_error ? _refine.occupancy_max 1.000 _refine.occupancy_min 0.500 _refine.pdbx_ls_sigma_I ? _refine.ls_redundancy_reflns_obs ? _refine.ls_R_factor_R_free_error_details ? _refine.pdbx_data_cutoff_high_rms_absF ? _refine.overall_FOM_free_R_set ? _refine.pdbx_diffrn_id 1 _refine.pdbx_refine_id 'X-RAY DIFFRACTION' _refine.pdbx_TLS_residual_ADP_flag ? _refine.pdbx_overall_SU_R_free_Cruickshank_DPI ? _refine.pdbx_overall_SU_R_Blow_DPI ? _refine.pdbx_overall_SU_R_free_Blow_DPI ? # _refine_hist.pdbx_refine_id 'X-RAY DIFFRACTION' _refine_hist.cycle_id LAST _refine_hist.pdbx_number_atoms_protein 1901 _refine_hist.pdbx_number_atoms_nucleic_acid 0 _refine_hist.pdbx_number_atoms_ligand 30 _refine_hist.number_atoms_solvent 164 _refine_hist.number_atoms_total 2095 _refine_hist.d_res_high 1.4800 _refine_hist.d_res_low 30.8400 # loop_ _refine_ls_restr.type _refine_ls_restr.number _refine_ls_restr.dev_ideal _refine_ls_restr.dev_ideal_target _refine_ls_restr.weight _refine_ls_restr.pdbx_restraint_function _refine_ls_restr.pdbx_refine_id r_bond_refined_d 2037 0.012 0.019 ? ? 'X-RAY DIFFRACTION' r_bond_other_d 1969 0.002 0.020 ? ? 'X-RAY DIFFRACTION' r_angle_refined_deg 2765 1.636 1.985 ? ? 'X-RAY DIFFRACTION' r_angle_other_deg 4535 0.768 3.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_1_deg 266 6.004 5.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_2_deg 94 36.118 24.362 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_3_deg 322 12.397 15.000 ? ? 'X-RAY DIFFRACTION' r_dihedral_angle_4_deg 12 18.066 15.000 ? ? 'X-RAY DIFFRACTION' r_chiral_restr 316 0.087 0.200 ? ? 'X-RAY DIFFRACTION' r_gen_planes_refined 2310 0.008 0.020 ? ? 'X-RAY DIFFRACTION' r_gen_planes_other 464 0.001 0.020 ? ? 'X-RAY DIFFRACTION' r_mcbond_it 999 1.251 1.574 ? ? 'X-RAY DIFFRACTION' r_mcbond_other 998 1.248 1.570 ? ? 'X-RAY DIFFRACTION' r_mcangle_it 1253 2.119 2.354 ? ? 'X-RAY DIFFRACTION' # _refine_ls_shell.d_res_high 1.4830 _refine_ls_shell.d_res_low 1.5210 _refine_ls_shell.pdbx_total_number_of_bins_used 20 _refine_ls_shell.percent_reflns_obs 97.8000 _refine_ls_shell.number_reflns_R_work 2607 _refine_ls_shell.R_factor_all ? _refine_ls_shell.R_factor_R_work 0.2560 _refine_ls_shell.R_factor_R_free 0.2430 _refine_ls_shell.percent_reflns_R_free ? _refine_ls_shell.number_reflns_R_free 144 _refine_ls_shell.R_factor_R_free_error ? _refine_ls_shell.number_reflns_all 2751 _refine_ls_shell.number_reflns_obs 2607 _refine_ls_shell.redundancy_reflns_obs ? _refine_ls_shell.pdbx_refine_id 'X-RAY DIFFRACTION' # _struct.entry_id 4LDN _struct.title 'Crystal structure of a putative purine nucleoside phosphorylase from Vibrio fischeri ES114 (Target NYSGRC-029521)' _struct.pdbx_descriptor 'Purine nucleoside phosphorylase DeoD-type (E.C.2.4.2.1)' _struct.pdbx_model_details ? _struct.pdbx_CASP_flag ? _struct.pdbx_model_type_details ? # _struct_keywords.entry_id 4LDN _struct_keywords.text 'Structural genomics, NYSGRC, PSI-Biology, New York Structural Genomics Research Consortium, TRANSFERASE' _struct_keywords.pdbx_keywords TRANSFERASE # loop_ _struct_asym.id _struct_asym.pdbx_blank_PDB_chainid_flag _struct_asym.pdbx_modified _struct_asym.entity_id _struct_asym.details A N N 1 ? B N N 2 ? C N N 2 ? D N N 3 ? E N N 3 ? F N N 3 ? G N N 3 ? H N N 3 ? I N N 4 ? # _struct_biol.id 1 _struct_biol.details 'probable hexamer' # loop_ _struct_conf.conf_type_id _struct_conf.id _struct_conf.pdbx_PDB_helix_id _struct_conf.beg_label_comp_id _struct_conf.beg_label_asym_id _struct_conf.beg_label_seq_id _struct_conf.pdbx_beg_PDB_ins_code _struct_conf.end_label_comp_id _struct_conf.end_label_asym_id _struct_conf.end_label_seq_id _struct_conf.pdbx_end_PDB_ins_code _struct_conf.beg_auth_comp_id _struct_conf.beg_auth_asym_id _struct_conf.beg_auth_seq_id _struct_conf.end_auth_comp_id _struct_conf.end_auth_asym_id _struct_conf.end_auth_seq_id _struct_conf.pdbx_PDB_helix_class _struct_conf.details _struct_conf.pdbx_PDB_helix_length HELX_P HELX_P1 1 ASN A 17 ? SER A 22 ? ASN A -5 SER A 0 1 ? 6 HELX_P HELX_P2 2 ASP A 44 ? LEU A 56 ? ASP A 22 LEU A 34 1 ? 13 HELX_P HELX_P3 3 ASP A 64 ? MSE A 68 ? ASP A 42 MSE A 46 5 ? 5 HELX_P HELX_P4 4 GLY A 88 ? THR A 101 ? GLY A 66 THR A 79 1 ? 14 HELX_P HELX_P5 5 LYS A 137 ? PHE A 143 ? LYS A 115 PHE A 121 1 ? 7 HELX_P HELX_P6 6 ASN A 153 ? THR A 166 ? ASN A 131 THR A 144 1 ? 14 HELX_P HELX_P7 7 GLU A 187 ? TYR A 196 ? GLU A 165 TYR A 174 1 ? 10 HELX_P HELX_P8 8 GLU A 204 ? HIS A 216 ? GLU A 182 HIS A 194 1 ? 13 HELX_P HELX_P9 9 THR A 236 ? LEU A 258 ? THR A 214 LEU A 236 1 ? 23 # _struct_conf_type.id HELX_P _struct_conf_type.criteria ? _struct_conf_type.reference ? # loop_ _struct_conn.id _struct_conn.conn_type_id _struct_conn.pdbx_leaving_atom_flag _struct_conn.pdbx_PDB_id _struct_conn.ptnr1_label_asym_id _struct_conn.ptnr1_label_comp_id _struct_conn.ptnr1_label_seq_id _struct_conn.ptnr1_label_atom_id _struct_conn.pdbx_ptnr1_label_alt_id _struct_conn.pdbx_ptnr1_PDB_ins_code _struct_conn.pdbx_ptnr1_standard_comp_id _struct_conn.ptnr1_symmetry _struct_conn.ptnr2_label_asym_id _struct_conn.ptnr2_label_comp_id _struct_conn.ptnr2_label_seq_id _struct_conn.ptnr2_label_atom_id _struct_conn.pdbx_ptnr2_label_alt_id _struct_conn.pdbx_ptnr2_PDB_ins_code _struct_conn.ptnr1_auth_asym_id _struct_conn.ptnr1_auth_comp_id _struct_conn.ptnr1_auth_seq_id _struct_conn.ptnr2_auth_asym_id _struct_conn.ptnr2_auth_comp_id _struct_conn.ptnr2_auth_seq_id _struct_conn.ptnr2_symmetry _struct_conn.pdbx_ptnr3_label_atom_id _struct_conn.pdbx_ptnr3_label_seq_id _struct_conn.pdbx_ptnr3_label_comp_id _struct_conn.pdbx_ptnr3_label_asym_id _struct_conn.pdbx_ptnr3_label_alt_id _struct_conn.pdbx_ptnr3_PDB_ins_code _struct_conn.details _struct_conn.pdbx_dist_value _struct_conn.pdbx_value_order covale1 covale ? ? A SER 22 C ? ? ? 1_555 A MSE 23 N ? ? A SER 0 A MSE 1 1_555 ? ? ? ? ? ? ? 1.337 ? covale2 covale ? ? A MSE 23 C ? ? ? 1_555 A SER 24 N ? ? A MSE 1 A SER 2 1_555 ? ? ? ? ? ? ? 1.330 ? covale3 covale ? ? A LEU 40 C ? ? ? 1_555 A MSE 41 N ? ? A LEU 18 A MSE 19 1_555 ? ? ? ? ? ? ? 1.329 ? covale4 covale ? ? A MSE 41 C ? ? ? 1_555 A PRO 42 N ? ? A MSE 19 A PRO 20 1_555 ? ? ? ? ? ? ? 1.350 ? covale5 covale ? ? A GLY 67 C ? ? ? 1_555 A MSE 68 N ? ? A GLY 45 A MSE 46 1_555 ? ? ? ? ? ? ? 1.332 ? covale6 covale ? ? A MSE 68 C ? ? ? 1_555 A LEU 69 N ? ? A MSE 46 A LEU 47 1_555 ? ? ? ? ? ? ? 1.319 ? covale7 covale ? ? A VAL 82 C ? ? ? 1_555 A MSE 83 N ? ? A VAL 60 A MSE 61 1_555 ? ? ? ? ? ? ? 1.326 ? covale8 covale ? ? A MSE 83 C ? ? ? 1_555 A GLY 84 N ? ? A MSE 61 A GLY 62 1_555 ? ? ? ? ? ? ? 1.333 ? covale9 covale ? ? A GLY 86 C ? ? ? 1_555 A MSE 87 N ? ? A GLY 64 A MSE 65 1_555 ? ? ? ? ? ? ? 1.313 ? covale10 covale ? ? A MSE 87 C ? ? ? 1_555 A GLY 88 N ? ? A MSE 65 A GLY 66 1_555 ? ? ? ? ? ? ? 1.316 ? covale11 covale ? ? A LEU 99 C ? ? ? 1_555 A MSE 100 N ? ? A LEU 77 A MSE 78 1_555 ? ? ? ? ? ? ? 1.327 ? covale12 covale ? ? A MSE 100 C ? ? ? 1_555 A THR 101 N ? ? A MSE 78 A THR 79 1_555 ? ? ? ? ? ? ? 1.323 ? covale13 covale ? ? A LYS 137 C ? ? ? 1_555 A MSE 138 N ? ? A LYS 115 A MSE 116 1_555 ? ? ? ? ? ? ? 1.336 ? covale14 covale ? ? A MSE 138 C ? ? ? 1_555 A ASN 139 N ? ? A MSE 116 A ASN 117 1_555 ? ? ? ? ? ? ? 1.323 ? covale15 covale ? ? A ASN 155 C ? ? ? 1_555 A MSE 156 N ? ? A ASN 133 A MSE 134 1_555 ? ? ? ? ? ? ? 1.340 ? covale16 covale ? ? A MSE 156 C ? ? ? 1_555 A LEU 157 N ? ? A MSE 134 A LEU 135 1_555 ? ? ? ? ? ? ? 1.324 ? covale17 covale ? ? A ASP 191 C ? ? ? 1_555 A MSE 192 N ? ? A ASP 169 A MSE 170 1_555 ? ? ? ? ? ? ? 1.328 ? covale18 covale ? ? A MSE 192 C ? ? ? 1_555 A MSE 193 N ? ? A MSE 170 A MSE 171 1_555 ? ? ? ? ? ? ? 1.329 ? covale19 covale ? ? A MSE 193 C ? ? ? 1_555 A ALA 194 N ? ? A MSE 171 A ALA 172 1_555 ? ? ? ? ? ? ? 1.336 ? covale20 covale ? ? A GLU 202 C ? ? ? 1_555 A MSE 203 N ? ? A GLU 180 A MSE 181 1_555 ? ? ? ? ? ? ? 1.341 ? covale21 covale ? ? A MSE 203 C ? ? ? 1_555 A GLU 204 N ? ? A MSE 181 A GLU 182 1_555 ? ? ? ? ? ? ? 1.336 ? covale22 covale ? ? A GLU 246 C ? ? ? 1_555 A MSE 247 N ? ? A GLU 224 A MSE 225 1_555 ? ? ? ? ? ? ? 1.340 ? covale23 covale ? ? A MSE 247 C ? ? ? 1_555 A ILE 248 N ? ? A MSE 225 A ILE 226 1_555 ? ? ? ? ? ? ? 1.345 ? # _struct_conn_type.id covale _struct_conn_type.criteria ? _struct_conn_type.reference ? # loop_ _struct_sheet.id _struct_sheet.type _struct_sheet.number_strands _struct_sheet.details A ? 10 ? B ? 7 ? # loop_ _struct_sheet_order.sheet_id _struct_sheet_order.range_id_1 _struct_sheet_order.range_id_2 _struct_sheet_order.offset _struct_sheet_order.sense A 1 2 ? anti-parallel A 2 3 ? anti-parallel A 3 4 ? parallel A 4 5 ? parallel A 5 6 ? anti-parallel A 6 7 ? parallel A 7 8 ? parallel A 8 9 ? anti-parallel A 9 10 ? anti-parallel B 1 2 ? anti-parallel B 2 3 ? anti-parallel B 3 4 ? parallel B 4 5 ? parallel B 5 6 ? parallel B 6 7 ? anti-parallel # loop_ _struct_sheet_range.sheet_id _struct_sheet_range.id _struct_sheet_range.beg_label_comp_id _struct_sheet_range.beg_label_asym_id _struct_sheet_range.beg_label_seq_id _struct_sheet_range.pdbx_beg_PDB_ins_code _struct_sheet_range.end_label_comp_id _struct_sheet_range.end_label_asym_id _struct_sheet_range.end_label_seq_id _struct_sheet_range.pdbx_end_PDB_ins_code _struct_sheet_range.beg_auth_comp_id _struct_sheet_range.beg_auth_asym_id _struct_sheet_range.beg_auth_seq_id _struct_sheet_range.end_auth_comp_id _struct_sheet_range.end_auth_asym_id _struct_sheet_range.end_auth_seq_id A 1 GLU A 57 ? THR A 63 ? GLU A 35 THR A 41 A 2 GLY A 70 ? PHE A 75 ? GLY A 48 PHE A 53 A 3 ARG A 78 ? MSE A 83 ? ARG A 56 MSE A 61 A 4 THR A 38 ? MSE A 41 ? THR A 16 MSE A 19 A 5 ASN A 107 ? ALA A 116 ? ASN A 85 ALA A 94 A 6 GLY A 200 ? GLU A 202 ? GLY A 178 GLU A 180 A 7 TYR A 171 ? SER A 178 ? TYR A 149 SER A 156 A 8 LEU A 126 ? THR A 134 ? LEU A 104 THR A 112 A 9 ASN A 218 ? HIS A 228 ? ASN A 196 HIS A 206 A 10 GLU A 233 ? HIS A 234 ? GLU A 211 HIS A 212 B 1 GLU A 57 ? THR A 63 ? GLU A 35 THR A 41 B 2 GLY A 70 ? PHE A 75 ? GLY A 48 PHE A 53 B 3 ARG A 78 ? MSE A 83 ? ARG A 56 MSE A 61 B 4 THR A 38 ? MSE A 41 ? THR A 16 MSE A 19 B 5 ASN A 107 ? ALA A 116 ? ASN A 85 ALA A 94 B 6 ASN A 218 ? HIS A 228 ? ASN A 196 HIS A 206 B 7 GLU A 233 ? HIS A 234 ? GLU A 211 HIS A 212 # loop_ _pdbx_struct_sheet_hbond.sheet_id _pdbx_struct_sheet_hbond.range_id_1 _pdbx_struct_sheet_hbond.range_id_2 _pdbx_struct_sheet_hbond.range_1_label_atom_id _pdbx_struct_sheet_hbond.range_1_label_comp_id _pdbx_struct_sheet_hbond.range_1_label_asym_id _pdbx_struct_sheet_hbond.range_1_label_seq_id _pdbx_struct_sheet_hbond.range_1_PDB_ins_code _pdbx_struct_sheet_hbond.range_1_auth_atom_id _pdbx_struct_sheet_hbond.range_1_auth_comp_id _pdbx_struct_sheet_hbond.range_1_auth_asym_id _pdbx_struct_sheet_hbond.range_1_auth_seq_id _pdbx_struct_sheet_hbond.range_2_label_atom_id _pdbx_struct_sheet_hbond.range_2_label_comp_id _pdbx_struct_sheet_hbond.range_2_label_asym_id _pdbx_struct_sheet_hbond.range_2_label_seq_id _pdbx_struct_sheet_hbond.range_2_PDB_ins_code _pdbx_struct_sheet_hbond.range_2_auth_atom_id _pdbx_struct_sheet_hbond.range_2_auth_comp_id _pdbx_struct_sheet_hbond.range_2_auth_asym_id _pdbx_struct_sheet_hbond.range_2_auth_seq_id A 1 2 N GLU A 57 ? N GLU A 35 O GLU A 74 ? O GLU A 52 A 2 3 N GLY A 73 ? N GLY A 51 O ILE A 80 ? O ILE A 58 A 3 4 O SER A 81 ? O SER A 59 N LEU A 40 ? N LEU A 18 A 4 5 N MSE A 41 ? N MSE A 19 O ILE A 109 ? O ILE A 87 A 5 6 N GLY A 115 ? N GLY A 93 O VAL A 201 ? O VAL A 179 A 6 7 O GLU A 202 ? O GLU A 180 N PHE A 177 ? N PHE A 155 A 7 8 O SER A 178 ? O SER A 156 N SER A 133 ? N SER A 111 A 8 9 N ILE A 127 ? N ILE A 105 O CYS A 223 ? O CYS A 201 A 9 10 N HIS A 228 ? N HIS A 206 O GLU A 233 ? O GLU A 211 B 1 2 N GLU A 57 ? N GLU A 35 O GLU A 74 ? O GLU A 52 B 2 3 N GLY A 73 ? N GLY A 51 O ILE A 80 ? O ILE A 58 B 3 4 O SER A 81 ? O SER A 59 N LEU A 40 ? N LEU A 18 B 4 5 N MSE A 41 ? N MSE A 19 O ILE A 109 ? O ILE A 87 B 5 6 N GLY A 112 ? N GLY A 90 O LEU A 222 ? O LEU A 200 B 6 7 N HIS A 228 ? N HIS A 206 O GLU A 233 ? O GLU A 211 # loop_ _struct_site.id _struct_site.pdbx_evidence_code _struct_site.pdbx_auth_asym_id _struct_site.pdbx_auth_comp_id _struct_site.pdbx_auth_seq_id _struct_site.pdbx_auth_ins_code _struct_site.pdbx_num_residues _struct_site.details AC1 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE PO4 A 301' AC2 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE PO4 A 302' AC3 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 303' AC4 Software ? ? ? ? 6 'BINDING SITE FOR RESIDUE EDO A 304' AC5 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 305' AC6 Software ? ? ? ? 5 'BINDING SITE FOR RESIDUE EDO A 306' AC7 Software ? ? ? ? 4 'BINDING SITE FOR RESIDUE EDO A 307' # loop_ _struct_site_gen.id _struct_site_gen.site_id _struct_site_gen.pdbx_num_res _struct_site_gen.label_comp_id _struct_site_gen.label_asym_id _struct_site_gen.label_seq_id _struct_site_gen.pdbx_auth_ins_code _struct_site_gen.auth_comp_id _struct_site_gen.auth_asym_id _struct_site_gen.auth_seq_id _struct_site_gen.label_atom_id _struct_site_gen.label_alt_id _struct_site_gen.symmetry _struct_site_gen.details 1 AC1 6 GLY A 43 ? GLY A 21 . ? 1_555 ? 2 AC1 6 ARG A 47 ? ARG A 25 . ? 1_555 ? 3 AC1 6 ARG A 66 ? ARG A 44 . ? 4_556 ? 4 AC1 6 ARG A 110 ? ARG A 88 . ? 1_555 ? 5 AC1 6 SER A 113 ? SER A 91 . ? 1_555 ? 6 AC1 6 HOH I . ? HOH A 404 . ? 1_555 ? 7 AC2 4 HIS A 232 ? HIS A 210 . ? 1_555 ? 8 AC2 4 HIS A 234 ? HIS A 212 . ? 1_555 ? 9 AC2 4 HOH I . ? HOH A 478 . ? 1_556 ? 10 AC2 4 HOH I . ? HOH A 537 . ? 1_555 ? 11 AC3 5 ASN A 139 ? ASN A 117 . ? 1_555 ? 12 AC3 5 ARG A 142 ? ARG A 120 . ? 1_555 ? 13 AC3 5 PHE A 148 ? PHE A 126 . ? 1_555 ? 14 AC3 5 TYR A 196 ? TYR A 174 . ? 5_556 ? 15 AC3 5 SER A 210 ? SER A 188 . ? 1_555 ? 16 AC4 6 TYR A 55 ? TYR A 33 . ? 1_555 ? 17 AC4 6 TYR A 55 ? TYR A 33 . ? 12_556 ? 18 AC4 6 HIS A 245 ? HIS A 223 . ? 1_555 ? 19 AC4 6 HIS A 245 ? HIS A 223 . ? 12_556 ? 20 AC4 6 HOH I . ? HOH A 405 . ? 1_555 ? 21 AC4 6 HOH I . ? HOH A 405 . ? 12_556 ? 22 AC5 4 HIS A 118 ? HIS A 96 . ? 1_555 ? 23 AC5 4 ALA A 194 ? ALA A 172 . ? 1_555 ? 24 AC5 4 ILE A 198 ? ILE A 176 . ? 1_555 ? 25 AC5 4 HOH I . ? HOH A 455 . ? 1_555 ? 26 AC6 5 ARG A 66 ? ARG A 44 . ? 4_556 ? 27 AC6 5 ARG A 66 ? ARG A 44 . ? 1_555 ? 28 AC6 5 MSE A 68 ? MSE A 46 . ? 4_556 ? 29 AC6 5 MSE A 68 ? MSE A 46 . ? 1_555 ? 30 AC6 5 HOH I . ? HOH A 482 . ? 1_555 ? 31 AC7 4 THR A 167 ? THR A 145 . ? 1_555 ? 32 AC7 4 ASN A 249 ? ASN A 227 . ? 1_555 ? 33 AC7 4 ASP A 253 ? ASP A 231 . ? 1_555 ? 34 AC7 4 HOH I . ? HOH A 503 . ? 1_555 ? # _atom_sites.entry_id 4LDN _atom_sites.fract_transf_matrix[1][1] 0.006131 _atom_sites.fract_transf_matrix[1][2] 0.003540 _atom_sites.fract_transf_matrix[1][3] 0.000000 _atom_sites.fract_transf_matrix[2][1] -0.000000 _atom_sites.fract_transf_matrix[2][2] 0.007079 _atom_sites.fract_transf_matrix[2][3] 0.000000 _atom_sites.fract_transf_matrix[3][1] 0.000000 _atom_sites.fract_transf_matrix[3][2] -0.000000 _atom_sites.fract_transf_matrix[3][3] 0.022056 _atom_sites.fract_transf_vector[1] 0.000000 _atom_sites.fract_transf_vector[2] 0.000000 _atom_sites.fract_transf_vector[3] 0.000000 # loop_ _atom_type.symbol C N O P S SE # loop_ _pdbx_poly_seq_scheme.asym_id _pdbx_poly_seq_scheme.entity_id _pdbx_poly_seq_scheme.seq_id _pdbx_poly_seq_scheme.mon_id _pdbx_poly_seq_scheme.ndb_seq_num _pdbx_poly_seq_scheme.pdb_seq_num _pdbx_poly_seq_scheme.auth_seq_num _pdbx_poly_seq_scheme.pdb_mon_id _pdbx_poly_seq_scheme.auth_mon_id _pdbx_poly_seq_scheme.pdb_strand_id _pdbx_poly_seq_scheme.pdb_ins_code _pdbx_poly_seq_scheme.hetero A 1 1 MSE 1 -21 ? ? ? A . n A 1 2 HIS 2 -20 ? ? ? A . n A 1 3 HIS 3 -19 ? ? ? A . n A 1 4 HIS 4 -18 ? ? ? A . n A 1 5 HIS 5 -17 ? ? ? A . n A 1 6 HIS 6 -16 ? ? ? A . n A 1 7 HIS 7 -15 ? ? ? A . n A 1 8 SER 8 -14 ? ? ? A . n A 1 9 SER 9 -13 ? ? ? A . n A 1 10 GLY 10 -12 ? ? ? A . n A 1 11 VAL 11 -11 ? ? ? A . n A 1 12 ASP 12 -10 ? ? ? A . n A 1 13 LEU 13 -9 ? ? ? A . n A 1 14 GLY 14 -8 ? ? ? A . n A 1 15 THR 15 -7 ? ? ? A . n A 1 16 GLU 16 -6 ? ? ? A . n A 1 17 ASN 17 -5 -5 ASN ASN A . n A 1 18 LEU 18 -4 -4 LEU LEU A . n A 1 19 TYR 19 -3 -3 TYR TYR A . n A 1 20 PHE 20 -2 -2 PHE PHE A . n A 1 21 GLN 21 -1 -1 GLN GLN A . n A 1 22 SER 22 0 0 SER SER A . n A 1 23 MSE 23 1 1 MSE MSE A . n A 1 24 SER 24 2 2 SER SER A . n A 1 25 THR 25 3 3 THR THR A . n A 1 26 PRO 26 4 4 PRO PRO A . n A 1 27 HIS 27 5 5 HIS HIS A . n A 1 28 ILE 28 6 6 ILE ILE A . n A 1 29 ASN 29 7 7 ASN ASN A . n A 1 30 ALA 30 8 8 ALA ALA A . n A 1 31 PRO 31 9 9 PRO PRO A . n A 1 32 LEU 32 10 10 LEU LEU A . n A 1 33 ASP 33 11 11 ASP ASP A . n A 1 34 ALA 34 12 12 ALA ALA A . n A 1 35 PHE 35 13 13 PHE PHE A . n A 1 36 ALA 36 14 14 ALA ALA A . n A 1 37 ASP 37 15 15 ASP ASP A . n A 1 38 THR 38 16 16 THR THR A . n A 1 39 ILE 39 17 17 ILE ILE A . n A 1 40 LEU 40 18 18 LEU LEU A . n A 1 41 MSE 41 19 19 MSE MSE A . n A 1 42 PRO 42 20 20 PRO PRO A . n A 1 43 GLY 43 21 21 GLY GLY A . n A 1 44 ASP 44 22 22 ASP ASP A . n A 1 45 PRO 45 23 23 PRO PRO A . n A 1 46 LEU 46 24 24 LEU LEU A . n A 1 47 ARG 47 25 25 ARG ARG A . n A 1 48 ALA 48 26 26 ALA ALA A . n A 1 49 LYS 49 27 27 LYS LYS A . n A 1 50 LEU 50 28 28 LEU LEU A . n A 1 51 ILE 51 29 29 ILE ILE A . n A 1 52 ALA 52 30 30 ALA ALA A . n A 1 53 GLU 53 31 31 GLU GLU A . n A 1 54 THR 54 32 32 THR THR A . n A 1 55 TYR 55 33 33 TYR TYR A . n A 1 56 LEU 56 34 34 LEU LEU A . n A 1 57 GLU 57 35 35 GLU GLU A . n A 1 58 ASN 58 36 36 ASN ASN A . n A 1 59 VAL 59 37 37 VAL VAL A . n A 1 60 VAL 60 38 38 VAL VAL A . n A 1 61 GLN 61 39 39 GLN GLN A . n A 1 62 VAL 62 40 40 VAL VAL A . n A 1 63 THR 63 41 41 THR THR A . n A 1 64 ASP 64 42 42 ASP ASP A . n A 1 65 VAL 65 43 43 VAL VAL A . n A 1 66 ARG 66 44 44 ARG ARG A . n A 1 67 GLY 67 45 45 GLY GLY A . n A 1 68 MSE 68 46 46 MSE MSE A . n A 1 69 LEU 69 47 47 LEU LEU A . n A 1 70 GLY 70 48 48 GLY GLY A . n A 1 71 PHE 71 49 49 PHE PHE A . n A 1 72 THR 72 50 50 THR THR A . n A 1 73 GLY 73 51 51 GLY GLY A . n A 1 74 GLU 74 52 52 GLU GLU A . n A 1 75 PHE 75 53 53 PHE PHE A . n A 1 76 LYS 76 54 54 LYS LYS A . n A 1 77 GLY 77 55 55 GLY GLY A . n A 1 78 ARG 78 56 56 ARG ARG A . n A 1 79 LYS 79 57 57 LYS LYS A . n A 1 80 ILE 80 58 58 ILE ILE A . n A 1 81 SER 81 59 59 SER SER A . n A 1 82 VAL 82 60 60 VAL VAL A . n A 1 83 MSE 83 61 61 MSE MSE A . n A 1 84 GLY 84 62 62 GLY GLY A . n A 1 85 HIS 85 63 63 HIS HIS A . n A 1 86 GLY 86 64 64 GLY GLY A . n A 1 87 MSE 87 65 65 MSE MSE A . n A 1 88 GLY 88 66 66 GLY GLY A . n A 1 89 ALA 89 67 67 ALA ALA A . n A 1 90 PRO 90 68 68 PRO PRO A . n A 1 91 SER 91 69 69 SER SER A . n A 1 92 ALA 92 70 70 ALA ALA A . n A 1 93 SER 93 71 71 SER SER A . n A 1 94 ILE 94 72 72 ILE ILE A . n A 1 95 TYR 95 73 73 TYR TYR A . n A 1 96 PHE 96 74 74 PHE PHE A . n A 1 97 HIS 97 75 75 HIS HIS A . n A 1 98 GLU 98 76 76 GLU GLU A . n A 1 99 LEU 99 77 77 LEU LEU A . n A 1 100 MSE 100 78 78 MSE MSE A . n A 1 101 THR 101 79 79 THR THR A . n A 1 102 THR 102 80 80 THR THR A . n A 1 103 TYR 103 81 81 TYR TYR A . n A 1 104 LYS 104 82 82 LYS LYS A . n A 1 105 VAL 105 83 83 VAL VAL A . n A 1 106 LYS 106 84 84 LYS LYS A . n A 1 107 ASN 107 85 85 ASN ASN A . n A 1 108 PHE 108 86 86 PHE PHE A . n A 1 109 ILE 109 87 87 ILE ILE A . n A 1 110 ARG 110 88 88 ARG ARG A . n A 1 111 ILE 111 89 89 ILE ILE A . n A 1 112 GLY 112 90 90 GLY GLY A . n A 1 113 SER 113 91 91 SER SER A . n A 1 114 CYS 114 92 92 CYS CYS A . n A 1 115 GLY 115 93 93 GLY GLY A . n A 1 116 ALA 116 94 94 ALA ALA A . n A 1 117 ILE 117 95 95 ILE ILE A . n A 1 118 HIS 118 96 96 HIS HIS A . n A 1 119 ASP 119 97 97 ASP ASP A . n A 1 120 ASP 120 98 98 ASP ASP A . n A 1 121 VAL 121 99 99 VAL VAL A . n A 1 122 LYS 122 100 100 LYS LYS A . n A 1 123 LEU 123 101 101 LEU LEU A . n A 1 124 LYS 124 102 102 LYS LYS A . n A 1 125 ASP 125 103 103 ASP ASP A . n A 1 126 LEU 126 104 104 LEU LEU A . n A 1 127 ILE 127 105 105 ILE ILE A . n A 1 128 VAL 128 106 106 VAL VAL A . n A 1 129 ALA 129 107 107 ALA ALA A . n A 1 130 ILE 130 108 108 ILE ILE A . n A 1 131 GLY 131 109 109 GLY GLY A . n A 1 132 ALA 132 110 110 ALA ALA A . n A 1 133 SER 133 111 111 SER SER A . n A 1 134 THR 134 112 112 THR THR A . n A 1 135 ASP 135 113 113 ASP ASP A . n A 1 136 SER 136 114 114 SER SER A . n A 1 137 LYS 137 115 115 LYS LYS A . n A 1 138 MSE 138 116 116 MSE MSE A . n A 1 139 ASN 139 117 117 ASN ASN A . n A 1 140 ARG 140 118 118 ARG ARG A . n A 1 141 ILE 141 119 119 ILE ILE A . n A 1 142 ARG 142 120 120 ARG ARG A . n A 1 143 PHE 143 121 121 PHE PHE A . n A 1 144 LYS 144 122 122 LYS LYS A . n A 1 145 ASP 145 123 123 ASP ASP A . n A 1 146 ASN 146 124 124 ASN ASN A . n A 1 147 ASP 147 125 125 ASP ASP A . n A 1 148 PHE 148 126 126 PHE PHE A . n A 1 149 ALA 149 127 127 ALA ALA A . n A 1 150 ALA 150 128 128 ALA ALA A . n A 1 151 THR 151 129 129 THR THR A . n A 1 152 ALA 152 130 130 ALA ALA A . n A 1 153 ASN 153 131 131 ASN ASN A . n A 1 154 TYR 154 132 132 TYR TYR A . n A 1 155 ASN 155 133 133 ASN ASN A . n A 1 156 MSE 156 134 134 MSE MSE A . n A 1 157 LEU 157 135 135 LEU LEU A . n A 1 158 SER 158 136 136 SER SER A . n A 1 159 GLU 159 137 137 GLU GLU A . n A 1 160 CYS 160 138 138 CYS CYS A . n A 1 161 VAL 161 139 139 VAL VAL A . n A 1 162 ASN 162 140 140 ASN ASN A . n A 1 163 THR 163 141 141 THR THR A . n A 1 164 LEU 164 142 142 LEU LEU A . n A 1 165 LYS 165 143 143 LYS LYS A . n A 1 166 THR 166 144 144 THR THR A . n A 1 167 THR 167 145 145 THR THR A . n A 1 168 ASP 168 146 146 ASP ASP A . n A 1 169 ILE 169 147 147 ILE ILE A . n A 1 170 ASN 170 148 148 ASN ASN A . n A 1 171 TYR 171 149 149 TYR TYR A . n A 1 172 LEU 172 150 150 LEU LEU A . n A 1 173 VAL 173 151 151 VAL VAL A . n A 1 174 GLY 174 152 152 GLY GLY A . n A 1 175 ASN 175 153 153 ASN ASN A . n A 1 176 VAL 176 154 154 VAL VAL A . n A 1 177 PHE 177 155 155 PHE PHE A . n A 1 178 SER 178 156 156 SER SER A . n A 1 179 SER 179 157 157 SER SER A . n A 1 180 ASP 180 158 158 ASP ASP A . n A 1 181 LEU 181 159 159 LEU LEU A . n A 1 182 PHE 182 160 160 PHE PHE A . n A 1 183 TYR 183 161 161 TYR TYR A . n A 1 184 ARG 184 162 162 ARG ARG A . n A 1 185 PRO 185 163 163 PRO PRO A . n A 1 186 ASP 186 164 164 ASP ASP A . n A 1 187 GLU 187 165 165 GLU GLU A . n A 1 188 GLU 188 166 166 GLU GLU A . n A 1 189 GLN 189 167 167 GLN GLN A . n A 1 190 TYR 190 168 168 TYR TYR A . n A 1 191 ASP 191 169 169 ASP ASP A . n A 1 192 MSE 192 170 170 MSE MSE A . n A 1 193 MSE 193 171 171 MSE MSE A . n A 1 194 ALA 194 172 172 ALA ALA A . n A 1 195 ARG 195 173 173 ARG ARG A . n A 1 196 TYR 196 174 174 TYR TYR A . n A 1 197 GLY 197 175 175 GLY GLY A . n A 1 198 ILE 198 176 176 ILE ILE A . n A 1 199 LEU 199 177 177 LEU LEU A . n A 1 200 GLY 200 178 178 GLY GLY A . n A 1 201 VAL 201 179 179 VAL VAL A . n A 1 202 GLU 202 180 180 GLU GLU A . n A 1 203 MSE 203 181 181 MSE MSE A . n A 1 204 GLU 204 182 182 GLU GLU A . n A 1 205 VAL 205 183 183 VAL VAL A . n A 1 206 ASN 206 184 184 ASN ASN A . n A 1 207 ALA 207 185 185 ALA ALA A . n A 1 208 LEU 208 186 186 LEU LEU A . n A 1 209 TYR 209 187 187 TYR TYR A . n A 1 210 SER 210 188 188 SER SER A . n A 1 211 ALA 211 189 189 ALA ALA A . n A 1 212 ALA 212 190 190 ALA ALA A . n A 1 213 ALA 213 191 191 ALA ALA A . n A 1 214 GLU 214 192 192 GLU GLU A . n A 1 215 ASN 215 193 193 ASN ASN A . n A 1 216 HIS 216 194 194 HIS HIS A . n A 1 217 CYS 217 195 195 CYS CYS A . n A 1 218 ASN 218 196 196 ASN ASN A . n A 1 219 ALA 219 197 197 ALA ALA A . n A 1 220 VAL 220 198 198 VAL VAL A . n A 1 221 ALA 221 199 199 ALA ALA A . n A 1 222 LEU 222 200 200 LEU LEU A . n A 1 223 CYS 223 201 201 CYS CYS A . n A 1 224 THR 224 202 202 THR THR A . n A 1 225 VAL 225 203 203 VAL VAL A . n A 1 226 THR 226 204 204 THR THR A . n A 1 227 ASP 227 205 205 ASP ASP A . n A 1 228 HIS 228 206 206 HIS HIS A . n A 1 229 ILE 229 207 207 ILE ILE A . n A 1 230 LYS 230 208 208 LYS LYS A . n A 1 231 ASN 231 209 209 ASN ASN A . n A 1 232 HIS 232 210 210 HIS HIS A . n A 1 233 GLU 233 211 211 GLU GLU A . n A 1 234 HIS 234 212 212 HIS HIS A . n A 1 235 LEU 235 213 213 LEU LEU A . n A 1 236 THR 236 214 214 THR THR A . n A 1 237 ALA 237 215 215 ALA ALA A . n A 1 238 ASP 238 216 216 ASP ASP A . n A 1 239 GLU 239 217 217 GLU GLU A . n A 1 240 ARG 240 218 218 ARG ARG A . n A 1 241 ARG 241 219 219 ARG ARG A . n A 1 242 THR 242 220 220 THR THR A . n A 1 243 GLU 243 221 221 GLU GLU A . n A 1 244 LEU 244 222 222 LEU LEU A . n A 1 245 HIS 245 223 223 HIS HIS A . n A 1 246 GLU 246 224 224 GLU GLU A . n A 1 247 MSE 247 225 225 MSE MSE A . n A 1 248 ILE 248 226 226 ILE ILE A . n A 1 249 ASN 249 227 227 ASN ASN A . n A 1 250 VAL 250 228 228 VAL VAL A . n A 1 251 ALA 251 229 229 ALA ALA A . n A 1 252 LEU 252 230 230 LEU LEU A . n A 1 253 ASP 253 231 231 ASP ASP A . n A 1 254 VAL 254 232 232 VAL VAL A . n A 1 255 ALA 255 233 233 ALA ALA A . n A 1 256 LEU 256 234 234 LEU LEU A . n A 1 257 LYS 257 235 235 LYS LYS A . n A 1 258 LEU 258 236 236 LEU LEU A . n A 1 259 PRO 259 237 237 PRO PRO A . n A 1 260 THR 260 238 238 THR THR A . n A 1 261 GLU 261 239 ? ? ? A . n # _pdbx_SG_project.id 1 _pdbx_SG_project.project_name PSI:Biology _pdbx_SG_project.full_name_of_center 'New York Structural Genomics Research Consortium' _pdbx_SG_project.initial_of_center NYSGRC # loop_ _pdbx_nonpoly_scheme.asym_id _pdbx_nonpoly_scheme.entity_id _pdbx_nonpoly_scheme.mon_id _pdbx_nonpoly_scheme.ndb_seq_num _pdbx_nonpoly_scheme.pdb_seq_num _pdbx_nonpoly_scheme.auth_seq_num _pdbx_nonpoly_scheme.pdb_mon_id _pdbx_nonpoly_scheme.auth_mon_id _pdbx_nonpoly_scheme.pdb_strand_id _pdbx_nonpoly_scheme.pdb_ins_code B 2 PO4 1 301 1 PO4 PO4 A . C 2 PO4 1 302 2 PO4 PO4 A . D 3 EDO 1 303 1 EDO EDO A . E 3 EDO 1 304 2 EDO EDO A . F 3 EDO 1 305 3 EDO EDO A . G 3 EDO 1 306 4 EDO EDO A . H 3 EDO 1 307 5 EDO EDO A . I 4 HOH 1 401 1 HOH HOH A . I 4 HOH 2 402 2 HOH HOH A . I 4 HOH 3 403 3 HOH HOH A . I 4 HOH 4 404 4 HOH HOH A . I 4 HOH 5 405 5 HOH HOH A . I 4 HOH 6 406 6 HOH HOH A . I 4 HOH 7 407 7 HOH HOH A . I 4 HOH 8 408 8 HOH HOH A . I 4 HOH 9 409 9 HOH HOH A . I 4 HOH 10 410 10 HOH HOH A . I 4 HOH 11 411 11 HOH HOH A . I 4 HOH 12 412 12 HOH HOH A . I 4 HOH 13 413 13 HOH HOH A . I 4 HOH 14 414 14 HOH HOH A . I 4 HOH 15 415 15 HOH HOH A . I 4 HOH 16 416 16 HOH HOH A . I 4 HOH 17 417 17 HOH HOH A . I 4 HOH 18 418 18 HOH HOH A . I 4 HOH 19 419 19 HOH HOH A . I 4 HOH 20 420 20 HOH HOH A . I 4 HOH 21 421 21 HOH HOH A . I 4 HOH 22 422 22 HOH HOH A . I 4 HOH 23 423 23 HOH HOH A . I 4 HOH 24 424 24 HOH HOH A . I 4 HOH 25 425 25 HOH HOH A . I 4 HOH 26 426 26 HOH HOH A . I 4 HOH 27 427 27 HOH HOH A . I 4 HOH 28 428 28 HOH HOH A . I 4 HOH 29 429 29 HOH HOH A . I 4 HOH 30 430 30 HOH HOH A . I 4 HOH 31 431 31 HOH HOH A . I 4 HOH 32 432 32 HOH HOH A . I 4 HOH 33 433 33 HOH HOH A . I 4 HOH 34 434 34 HOH HOH A . I 4 HOH 35 435 35 HOH HOH A . I 4 HOH 36 436 36 HOH HOH A . I 4 HOH 37 437 37 HOH HOH A . I 4 HOH 38 438 38 HOH HOH A . I 4 HOH 39 439 39 HOH HOH A . I 4 HOH 40 440 40 HOH HOH A . I 4 HOH 41 441 41 HOH HOH A . I 4 HOH 42 442 42 HOH HOH A . I 4 HOH 43 443 43 HOH HOH A . I 4 HOH 44 444 44 HOH HOH A . I 4 HOH 45 445 45 HOH HOH A . I 4 HOH 46 446 46 HOH HOH A . I 4 HOH 47 447 47 HOH HOH A . I 4 HOH 48 448 48 HOH HOH A . I 4 HOH 49 449 49 HOH HOH A . I 4 HOH 50 450 50 HOH HOH A . I 4 HOH 51 451 51 HOH HOH A . I 4 HOH 52 452 52 HOH HOH A . I 4 HOH 53 453 53 HOH HOH A . I 4 HOH 54 454 54 HOH HOH A . I 4 HOH 55 455 55 HOH HOH A . I 4 HOH 56 456 56 HOH HOH A . I 4 HOH 57 457 57 HOH HOH A . I 4 HOH 58 458 58 HOH HOH A . I 4 HOH 59 459 59 HOH HOH A . I 4 HOH 60 460 60 HOH HOH A . I 4 HOH 61 461 61 HOH HOH A . I 4 HOH 62 462 62 HOH HOH A . I 4 HOH 63 463 63 HOH HOH A . I 4 HOH 64 464 64 HOH HOH A . I 4 HOH 65 465 65 HOH HOH A . I 4 HOH 66 466 66 HOH HOH A . I 4 HOH 67 467 67 HOH HOH A . I 4 HOH 68 468 68 HOH HOH A . I 4 HOH 69 469 69 HOH HOH A . I 4 HOH 70 470 70 HOH HOH A . I 4 HOH 71 471 71 HOH HOH A . I 4 HOH 72 472 72 HOH HOH A . I 4 HOH 73 473 73 HOH HOH A . I 4 HOH 74 474 74 HOH HOH A . I 4 HOH 75 475 75 HOH HOH A . I 4 HOH 76 476 76 HOH HOH A . I 4 HOH 77 477 77 HOH HOH A . I 4 HOH 78 478 78 HOH HOH A . I 4 HOH 79 479 79 HOH HOH A . I 4 HOH 80 480 80 HOH HOH A . I 4 HOH 81 481 81 HOH HOH A . I 4 HOH 82 482 82 HOH HOH A . I 4 HOH 83 483 83 HOH HOH A . I 4 HOH 84 484 84 HOH HOH A . I 4 HOH 85 485 85 HOH HOH A . I 4 HOH 86 486 86 HOH HOH A . I 4 HOH 87 487 87 HOH HOH A . I 4 HOH 88 488 88 HOH HOH A . I 4 HOH 89 489 89 HOH HOH A . I 4 HOH 90 490 90 HOH HOH A . I 4 HOH 91 491 91 HOH HOH A . I 4 HOH 92 492 92 HOH HOH A . I 4 HOH 93 493 93 HOH HOH A . I 4 HOH 94 494 94 HOH HOH A . I 4 HOH 95 495 95 HOH HOH A . I 4 HOH 96 496 96 HOH HOH A . I 4 HOH 97 497 97 HOH HOH A . I 4 HOH 98 498 98 HOH HOH A . I 4 HOH 99 499 99 HOH HOH A . I 4 HOH 100 500 100 HOH HOH A . I 4 HOH 101 501 101 HOH HOH A . I 4 HOH 102 502 102 HOH HOH A . I 4 HOH 103 503 103 HOH HOH A . I 4 HOH 104 504 104 HOH HOH A . I 4 HOH 105 505 105 HOH HOH A . I 4 HOH 106 506 106 HOH HOH A . I 4 HOH 107 507 107 HOH HOH A . I 4 HOH 108 508 108 HOH HOH A . I 4 HOH 109 509 109 HOH HOH A . I 4 HOH 110 510 110 HOH HOH A . I 4 HOH 111 511 111 HOH HOH A . I 4 HOH 112 512 112 HOH HOH A . I 4 HOH 113 513 113 HOH HOH A . I 4 HOH 114 514 114 HOH HOH A . I 4 HOH 115 515 115 HOH HOH A . I 4 HOH 116 516 116 HOH HOH A . I 4 HOH 117 517 117 HOH HOH A . I 4 HOH 118 518 118 HOH HOH A . I 4 HOH 119 519 119 HOH HOH A . I 4 HOH 120 520 120 HOH HOH A . I 4 HOH 121 521 121 HOH HOH A . I 4 HOH 122 522 122 HOH HOH A . I 4 HOH 123 523 123 HOH HOH A . I 4 HOH 124 524 124 HOH HOH A . I 4 HOH 125 525 125 HOH HOH A . I 4 HOH 126 526 126 HOH HOH A . I 4 HOH 127 527 127 HOH HOH A . I 4 HOH 128 528 128 HOH HOH A . I 4 HOH 129 529 129 HOH HOH A . I 4 HOH 130 530 130 HOH HOH A . I 4 HOH 131 531 131 HOH HOH A . I 4 HOH 132 532 132 HOH HOH A . I 4 HOH 133 533 133 HOH HOH A . I 4 HOH 134 534 134 HOH HOH A . I 4 HOH 135 535 135 HOH HOH A . I 4 HOH 136 536 136 HOH HOH A . I 4 HOH 137 537 137 HOH HOH A . I 4 HOH 138 538 138 HOH HOH A . I 4 HOH 139 539 139 HOH HOH A . I 4 HOH 140 540 140 HOH HOH A . I 4 HOH 141 541 141 HOH HOH A . I 4 HOH 142 542 142 HOH HOH A . I 4 HOH 143 543 144 HOH HOH A . I 4 HOH 144 544 145 HOH HOH A . I 4 HOH 145 545 147 HOH HOH A . I 4 HOH 146 546 148 HOH HOH A . I 4 HOH 147 547 149 HOH HOH A . I 4 HOH 148 548 150 HOH HOH A . I 4 HOH 149 549 151 HOH HOH A . I 4 HOH 150 550 152 HOH HOH A . I 4 HOH 151 551 153 HOH HOH A . I 4 HOH 152 552 154 HOH HOH A . I 4 HOH 153 553 155 HOH HOH A . I 4 HOH 154 554 156 HOH HOH A . I 4 HOH 155 555 157 HOH HOH A . I 4 HOH 156 556 158 HOH HOH A . I 4 HOH 157 557 159 HOH HOH A . I 4 HOH 158 558 160 HOH HOH A . I 4 HOH 159 559 161 HOH HOH A . I 4 HOH 160 560 162 HOH HOH A . I 4 HOH 161 561 163 HOH HOH A . I 4 HOH 162 562 164 HOH HOH A . I 4 HOH 163 563 165 HOH HOH A . I 4 HOH 164 564 166 HOH HOH A . # loop_ _pdbx_struct_mod_residue.id _pdbx_struct_mod_residue.label_asym_id _pdbx_struct_mod_residue.label_comp_id _pdbx_struct_mod_residue.label_seq_id _pdbx_struct_mod_residue.auth_asym_id _pdbx_struct_mod_residue.auth_comp_id _pdbx_struct_mod_residue.auth_seq_id _pdbx_struct_mod_residue.PDB_ins_code _pdbx_struct_mod_residue.parent_comp_id _pdbx_struct_mod_residue.details 1 A MSE 23 A MSE 1 ? MET SELENOMETHIONINE 2 A MSE 41 A MSE 19 ? MET SELENOMETHIONINE 3 A MSE 68 A MSE 46 ? MET SELENOMETHIONINE 4 A MSE 83 A MSE 61 ? MET SELENOMETHIONINE 5 A MSE 87 A MSE 65 ? MET SELENOMETHIONINE 6 A MSE 100 A MSE 78 ? MET SELENOMETHIONINE 7 A MSE 138 A MSE 116 ? MET SELENOMETHIONINE 8 A MSE 156 A MSE 134 ? MET SELENOMETHIONINE 9 A MSE 192 A MSE 170 ? MET SELENOMETHIONINE 10 A MSE 193 A MSE 171 ? MET SELENOMETHIONINE 11 A MSE 203 A MSE 181 ? MET SELENOMETHIONINE 12 A MSE 247 A MSE 225 ? MET SELENOMETHIONINE # _pdbx_struct_assembly.id 1 _pdbx_struct_assembly.details author_and_software_defined_assembly _pdbx_struct_assembly.method_details PISA _pdbx_struct_assembly.oligomeric_details hexameric _pdbx_struct_assembly.oligomeric_count 6 # _pdbx_struct_assembly_gen.assembly_id 1 _pdbx_struct_assembly_gen.oper_expression 1,2,3,4,5,6 _pdbx_struct_assembly_gen.asym_id_list A,B,C,D,E,F,G,H,I # loop_ _pdbx_struct_assembly_prop.biol_id _pdbx_struct_assembly_prop.type _pdbx_struct_assembly_prop.value _pdbx_struct_assembly_prop.details 1 'ABSA (A^2)' 28020 ? 1 MORE -82 ? 1 'SSA (A^2)' 51840 ? # loop_ _pdbx_struct_oper_list.id _pdbx_struct_oper_list.type _pdbx_struct_oper_list.name _pdbx_struct_oper_list.symmetry_operation _pdbx_struct_oper_list.matrix[1][1] _pdbx_struct_oper_list.matrix[1][2] _pdbx_struct_oper_list.matrix[1][3] _pdbx_struct_oper_list.vector[1] _pdbx_struct_oper_list.matrix[2][1] _pdbx_struct_oper_list.matrix[2][2] _pdbx_struct_oper_list.matrix[2][3] _pdbx_struct_oper_list.vector[2] _pdbx_struct_oper_list.matrix[3][1] _pdbx_struct_oper_list.matrix[3][2] _pdbx_struct_oper_list.matrix[3][3] _pdbx_struct_oper_list.vector[3] 1 'identity operation' 1_555 x,y,z 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 2 'crystal symmetry operation' 2_555 -y,x-y,z -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 3 'crystal symmetry operation' 3_555 -x+y,-x,z -0.5000000000 0.8660254038 0.0000000000 0.0000000000 -0.8660254038 -0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 1.0000000000 0.0000000000 4 'crystal symmetry operation' 4_556 y,x,-z+1 -0.5000000000 0.8660254038 0.0000000000 0.0000000000 0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 45.3390000000 5 'crystal symmetry operation' 5_556 x-y,-y,-z+1 1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 45.3390000000 6 'crystal symmetry operation' 6_556 -x,-x+y,-z+1 -0.5000000000 -0.8660254038 0.0000000000 0.0000000000 -0.8660254038 0.5000000000 0.0000000000 0.0000000000 0.0000000000 0.0000000000 -1.0000000000 45.3390000000 # loop_ _pdbx_struct_special_symmetry.id _pdbx_struct_special_symmetry.PDB_model_num _pdbx_struct_special_symmetry.auth_asym_id _pdbx_struct_special_symmetry.auth_comp_id _pdbx_struct_special_symmetry.auth_seq_id _pdbx_struct_special_symmetry.PDB_ins_code _pdbx_struct_special_symmetry.label_asym_id _pdbx_struct_special_symmetry.label_comp_id _pdbx_struct_special_symmetry.label_seq_id 1 1 A EDO 306 ? G EDO . 2 1 A HOH 432 ? I HOH . 3 1 A HOH 457 ? I HOH . 4 1 A HOH 477 ? I HOH . 5 1 A HOH 533 ? I HOH . # loop_ _pdbx_audit_revision_history.ordinal _pdbx_audit_revision_history.data_content_type _pdbx_audit_revision_history.major_revision _pdbx_audit_revision_history.minor_revision _pdbx_audit_revision_history.revision_date 1 'Structure model' 1 0 2013-07-03 2 'Structure model' 1 1 2017-11-15 # _pdbx_audit_revision_details.ordinal 1 _pdbx_audit_revision_details.revision_ordinal 1 _pdbx_audit_revision_details.data_content_type 'Structure model' _pdbx_audit_revision_details.provider repository _pdbx_audit_revision_details.type 'Initial release' _pdbx_audit_revision_details.description ? # _pdbx_audit_revision_group.ordinal 1 _pdbx_audit_revision_group.revision_ordinal 2 _pdbx_audit_revision_group.data_content_type 'Structure model' _pdbx_audit_revision_group.group 'Refinement description' # _pdbx_audit_revision_category.ordinal 1 _pdbx_audit_revision_category.revision_ordinal 2 _pdbx_audit_revision_category.data_content_type 'Structure model' _pdbx_audit_revision_category.category software # loop_ _pdbx_audit_revision_item.ordinal _pdbx_audit_revision_item.revision_ordinal _pdbx_audit_revision_item.data_content_type _pdbx_audit_revision_item.item 1 2 'Structure model' '_software.classification' 2 2 'Structure model' '_software.name' # loop_ _software.pdbx_ordinal _software.name _software.version _software.date _software.type _software.contact_author _software.contact_author_email _software.classification _software.location _software.language _software.citation_id 1 REFMAC 5.7.0032 ? program 'Garib N. Murshudov' garib@ysbl.york.ac.uk refinement http://www.ccp4.ac.uk/dist/html/refmac5.html Fortran_77 ? 2 PDB_EXTRACT 3.11 'April 22, 2011' package PDB deposit@deposit.rcsb.org 'data extraction' http://sw-tools.pdb.org/apps/PDB_EXTRACT/ C++ ? 3 CBASS . ? ? ? ? 'data collection' ? ? ? 4 XDS . ? ? ? ? 'data reduction' ? ? ? 5 Aimless . ? ? ? ? 'data scaling' ? ? ? 6 SHELX C ? ? ? ? phasing ? ? ? 7 SHELXD . ? ? ? ? phasing ? ? ? 8 SHELXE . ? ? ? ? 'model building' ? ? ? # _pdbx_validate_close_contact.id 1 _pdbx_validate_close_contact.PDB_model_num 1 _pdbx_validate_close_contact.auth_atom_id_1 OD2 _pdbx_validate_close_contact.auth_asym_id_1 A _pdbx_validate_close_contact.auth_comp_id_1 ASP _pdbx_validate_close_contact.auth_seq_id_1 123 _pdbx_validate_close_contact.PDB_ins_code_1 ? _pdbx_validate_close_contact.label_alt_id_1 ? _pdbx_validate_close_contact.auth_atom_id_2 O _pdbx_validate_close_contact.auth_asym_id_2 A _pdbx_validate_close_contact.auth_comp_id_2 HOH _pdbx_validate_close_contact.auth_seq_id_2 552 _pdbx_validate_close_contact.PDB_ins_code_2 ? _pdbx_validate_close_contact.label_alt_id_2 ? _pdbx_validate_close_contact.dist 2.19 # _pdbx_validate_symm_contact.id 1 _pdbx_validate_symm_contact.PDB_model_num 1 _pdbx_validate_symm_contact.auth_atom_id_1 O _pdbx_validate_symm_contact.auth_asym_id_1 A _pdbx_validate_symm_contact.auth_comp_id_1 HOH _pdbx_validate_symm_contact.auth_seq_id_1 517 _pdbx_validate_symm_contact.PDB_ins_code_1 ? _pdbx_validate_symm_contact.label_alt_id_1 ? _pdbx_validate_symm_contact.site_symmetry_1 1_555 _pdbx_validate_symm_contact.auth_atom_id_2 O _pdbx_validate_symm_contact.auth_asym_id_2 A _pdbx_validate_symm_contact.auth_comp_id_2 HOH _pdbx_validate_symm_contact.auth_seq_id_2 517 _pdbx_validate_symm_contact.PDB_ins_code_2 ? _pdbx_validate_symm_contact.label_alt_id_2 ? _pdbx_validate_symm_contact.site_symmetry_2 4_556 _pdbx_validate_symm_contact.dist 2.10 # loop_ _pdbx_validate_rmsd_angle.id _pdbx_validate_rmsd_angle.PDB_model_num _pdbx_validate_rmsd_angle.auth_atom_id_1 _pdbx_validate_rmsd_angle.auth_asym_id_1 _pdbx_validate_rmsd_angle.auth_comp_id_1 _pdbx_validate_rmsd_angle.auth_seq_id_1 _pdbx_validate_rmsd_angle.PDB_ins_code_1 _pdbx_validate_rmsd_angle.label_alt_id_1 _pdbx_validate_rmsd_angle.auth_atom_id_2 _pdbx_validate_rmsd_angle.auth_asym_id_2 _pdbx_validate_rmsd_angle.auth_comp_id_2 _pdbx_validate_rmsd_angle.auth_seq_id_2 _pdbx_validate_rmsd_angle.PDB_ins_code_2 _pdbx_validate_rmsd_angle.label_alt_id_2 _pdbx_validate_rmsd_angle.auth_atom_id_3 _pdbx_validate_rmsd_angle.auth_asym_id_3 _pdbx_validate_rmsd_angle.auth_comp_id_3 _pdbx_validate_rmsd_angle.auth_seq_id_3 _pdbx_validate_rmsd_angle.PDB_ins_code_3 _pdbx_validate_rmsd_angle.label_alt_id_3 _pdbx_validate_rmsd_angle.angle_value _pdbx_validate_rmsd_angle.angle_target_value _pdbx_validate_rmsd_angle.angle_deviation _pdbx_validate_rmsd_angle.angle_standard_deviation _pdbx_validate_rmsd_angle.linker_flag 1 1 NE A ARG 25 ? B CZ A ARG 25 ? B NH1 A ARG 25 ? B 123.63 120.30 3.33 0.50 N 2 1 NE A ARG 25 ? B CZ A ARG 25 ? B NH2 A ARG 25 ? B 116.14 120.30 -4.16 0.50 N 3 1 CB A ASP 158 ? ? CG A ASP 158 ? ? OD2 A ASP 158 ? ? 112.11 118.30 -6.19 0.90 N # loop_ _pdbx_validate_torsion.id _pdbx_validate_torsion.PDB_model_num _pdbx_validate_torsion.auth_comp_id _pdbx_validate_torsion.auth_asym_id _pdbx_validate_torsion.auth_seq_id _pdbx_validate_torsion.PDB_ins_code _pdbx_validate_torsion.label_alt_id _pdbx_validate_torsion.phi _pdbx_validate_torsion.psi 1 1 ASP A 42 ? ? -152.96 20.44 2 1 ARG A 44 ? ? 56.73 19.68 3 1 THR A 79 ? ? -102.85 -86.25 4 1 LYS A 102 ? ? 82.09 -4.91 5 1 GLU A 180 ? ? -150.94 -157.30 # loop_ _pdbx_unobs_or_zero_occ_residues.id _pdbx_unobs_or_zero_occ_residues.PDB_model_num _pdbx_unobs_or_zero_occ_residues.polymer_flag _pdbx_unobs_or_zero_occ_residues.occupancy_flag _pdbx_unobs_or_zero_occ_residues.auth_asym_id _pdbx_unobs_or_zero_occ_residues.auth_comp_id _pdbx_unobs_or_zero_occ_residues.auth_seq_id _pdbx_unobs_or_zero_occ_residues.PDB_ins_code _pdbx_unobs_or_zero_occ_residues.label_asym_id _pdbx_unobs_or_zero_occ_residues.label_comp_id _pdbx_unobs_or_zero_occ_residues.label_seq_id 1 1 Y 1 A MSE -21 ? A MSE 1 2 1 Y 1 A HIS -20 ? A HIS 2 3 1 Y 1 A HIS -19 ? A HIS 3 4 1 Y 1 A HIS -18 ? A HIS 4 5 1 Y 1 A HIS -17 ? A HIS 5 6 1 Y 1 A HIS -16 ? A HIS 6 7 1 Y 1 A HIS -15 ? A HIS 7 8 1 Y 1 A SER -14 ? A SER 8 9 1 Y 1 A SER -13 ? A SER 9 10 1 Y 1 A GLY -12 ? A GLY 10 11 1 Y 1 A VAL -11 ? A VAL 11 12 1 Y 1 A ASP -10 ? A ASP 12 13 1 Y 1 A LEU -9 ? A LEU 13 14 1 Y 1 A GLY -8 ? A GLY 14 15 1 Y 1 A THR -7 ? A THR 15 16 1 Y 1 A GLU -6 ? A GLU 16 17 1 Y 1 A GLU 239 ? A GLU 261 # loop_ _pdbx_entity_nonpoly.entity_id _pdbx_entity_nonpoly.name _pdbx_entity_nonpoly.comp_id 2 'PHOSPHATE ION' PO4 3 1,2-ETHANEDIOL EDO 4 water HOH #