HEADER ALLERGEN, PLANT PROTEIN 25-JUN-13 4LEJ TITLE CRYSTAL STRUCTURE OF THE KOREAN PINE (PINUS KORAIENSIS) VICILIN COMPND MOL_ID: 1; COMPND 2 MOLECULE: VICILIN; COMPND 3 CHAIN: A SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: PINUS KORAIENSIS; SOURCE 3 ORGANISM_COMMON: CHANNAMU; SOURCE 4 ORGANISM_TAXID: 88728; SOURCE 5 OTHER_DETAILS: SEEDS KEYWDS SEED STORAGE PROTEIN, ALLERGEN, CUPIN, SEED STORAGE, PLANT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR T.C.JIN,Y.WANG,Y.Z.ZHANG REVDAT 4 28-FEB-24 4LEJ 1 REMARK LINK REVDAT 3 15-NOV-17 4LEJ 1 REMARK REVDAT 2 15-OCT-14 4LEJ 1 JRNL REVDAT 1 22-JAN-14 4LEJ 0 JRNL AUTH T.JIN,Y.WANG,Y.W.CHEN,T.J.FU,M.H.KOTHARY,T.H.MCHUGH,Y.ZHANG JRNL TITL CRYSTAL STRUCTURE OF KOREAN PINE ( PINUS KORAIENSIS ) 7S JRNL TITL 2 SEED STORAGE PROTEIN WITH COPPER LIGANDS. JRNL REF J.AGRIC.FOOD CHEM. V. 62 222 2014 JRNL REFN ISSN 0021-8561 JRNL PMID 24328105 JRNL DOI 10.1021/JF4039887 REMARK 2 REMARK 2 RESOLUTION. 2.40 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1304 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.40 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 33.27 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.330 REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 21257 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.195 REMARK 3 R VALUE (WORKING SET) : 0.192 REMARK 3 FREE R VALUE : 0.241 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.120 REMARK 3 FREE R VALUE TEST SET COUNT : 1089 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 33.2714 - 4.7989 0.92 2433 125 0.1878 0.2257 REMARK 3 2 4.7989 - 3.8108 0.99 2560 125 0.1593 0.1998 REMARK 3 3 3.8108 - 3.3296 1.00 2552 132 0.1876 0.2494 REMARK 3 4 3.3296 - 3.0254 1.00 2539 145 0.2044 0.2644 REMARK 3 5 3.0254 - 2.8087 1.00 2515 150 0.2218 0.2696 REMARK 3 6 2.8087 - 2.6431 1.00 2512 134 0.2435 0.3172 REMARK 3 7 2.6431 - 2.5108 1.00 2545 141 0.2494 0.2804 REMARK 3 8 2.5108 - 2.4016 1.00 2512 137 0.2692 0.3402 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 25.270 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 71.95 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.004 2902 REMARK 3 ANGLE : 0.802 3928 REMARK 3 CHIRALITY : 0.056 422 REMARK 3 PLANARITY : 0.004 524 REMARK 3 DIHEDRAL : 12.821 1087 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 3 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 65 THROUGH 204 ) REMARK 3 ORIGIN FOR THE GROUP (A): 18.3006 -1.3900 -16.1092 REMARK 3 T TENSOR REMARK 3 T11: 0.7486 T22: 0.4510 REMARK 3 T33: 0.5327 T12: 0.1613 REMARK 3 T13: 0.2018 T23: -0.0348 REMARK 3 L TENSOR REMARK 3 L11: 2.9406 L22: 3.5396 REMARK 3 L33: 3.7565 L12: 0.2895 REMARK 3 L13: -0.2665 L23: -1.7615 REMARK 3 S TENSOR REMARK 3 S11: -0.0140 S12: 0.3075 S13: -0.3526 REMARK 3 S21: -1.0619 S22: -0.2368 S23: -0.4984 REMARK 3 S31: 0.5228 S32: 0.0012 S33: 0.2085 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 205 THROUGH 427 ) REMARK 3 ORIGIN FOR THE GROUP (A): 19.2913 -9.9681 -4.0408 REMARK 3 T TENSOR REMARK 3 T11: 0.4362 T22: 0.3746 REMARK 3 T33: 0.5596 T12: -0.0052 REMARK 3 T13: 0.1271 T23: -0.0618 REMARK 3 L TENSOR REMARK 3 L11: 1.1866 L22: 3.7132 REMARK 3 L33: 2.4879 L12: -0.8690 REMARK 3 L13: 0.3534 L23: -2.0458 REMARK 3 S TENSOR REMARK 3 S11: 0.0587 S12: 0.0606 S13: -0.2760 REMARK 3 S21: -0.3652 S22: -0.1625 S23: -0.1683 REMARK 3 S31: 0.1063 S32: 0.1209 S33: 0.1301 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 428 THROUGH 454 ) REMARK 3 ORIGIN FOR THE GROUP (A): 24.9404 -31.2681 15.3490 REMARK 3 T TENSOR REMARK 3 T11: 0.6444 T22: 0.5712 REMARK 3 T33: 1.2816 T12: 0.0665 REMARK 3 T13: 0.1664 T23: 0.2110 REMARK 3 L TENSOR REMARK 3 L11: 6.9941 L22: 4.5368 REMARK 3 L33: 6.7047 L12: 3.0245 REMARK 3 L13: 3.1556 L23: -0.8359 REMARK 3 S TENSOR REMARK 3 S11: 0.1801 S12: -0.9892 S13: -1.1935 REMARK 3 S21: 0.2421 S22: -0.2417 S23: -0.1729 REMARK 3 S31: 1.1204 S32: 0.5286 S33: 0.2018 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LEJ COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 09-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080529. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 110 REMARK 200 PH : 4.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 22-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0 REMARK 200 MONOCHROMATOR : ID REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 300 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : DENZO REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21280 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.400 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 7.200 REMARK 200 R MERGE (I) : 0.10600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 20.0000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.40 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.44 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.40 REMARK 200 R MERGE FOR SHELL (I) : 0.75200 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.54 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.97 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 2M SODIUM FORMATE, 0.1 M SODIUM REMARK 280 ACETATE TRIHYDRATE, PH 4.6, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: I 21 3 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 5555 Z,X,Y REMARK 290 6555 Z+1/2,-X+1/2,-Y REMARK 290 7555 -Z+1/2,-X,Y+1/2 REMARK 290 8555 -Z,X+1/2,-Y+1/2 REMARK 290 9555 Y,Z,X REMARK 290 10555 -Y,Z+1/2,-X+1/2 REMARK 290 11555 Y+1/2,-Z+1/2,-X REMARK 290 12555 -Y+1/2,-Z,X+1/2 REMARK 290 13555 X+1/2,Y+1/2,Z+1/2 REMARK 290 14555 -X,-Y+1/2,Z REMARK 290 15555 -X+1/2,Y,-Z REMARK 290 16555 X,-Y,-Z+1/2 REMARK 290 17555 Z+1/2,X+1/2,Y+1/2 REMARK 290 18555 Z,-X,-Y+1/2 REMARK 290 19555 -Z,-X+1/2,Y REMARK 290 20555 -Z+1/2,X,-Y REMARK 290 21555 Y+1/2,Z+1/2,X+1/2 REMARK 290 22555 -Y+1/2,Z,-X REMARK 290 23555 Y,-Z,-X+1/2 REMARK 290 24555 -Y,-Z+1/2,X REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 74.39000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 74.39000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 74.39000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 74.39000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 5 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 6 0.000000 0.000000 1.000000 74.39000 REMARK 290 SMTRY2 6 -1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY3 6 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 7 0.000000 0.000000 -1.000000 74.39000 REMARK 290 SMTRY2 7 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 1.000000 0.000000 74.39000 REMARK 290 SMTRY1 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 8 1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY3 8 0.000000 -1.000000 0.000000 74.39000 REMARK 290 SMTRY1 9 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 9 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 9 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 10 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 10 0.000000 0.000000 1.000000 74.39000 REMARK 290 SMTRY3 10 -1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY1 11 0.000000 1.000000 0.000000 74.39000 REMARK 290 SMTRY2 11 0.000000 0.000000 -1.000000 74.39000 REMARK 290 SMTRY3 11 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 12 0.000000 -1.000000 0.000000 74.39000 REMARK 290 SMTRY2 12 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 12 1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY1 13 1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY2 13 0.000000 1.000000 0.000000 74.39000 REMARK 290 SMTRY3 13 0.000000 0.000000 1.000000 74.39000 REMARK 290 SMTRY1 14 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 14 0.000000 -1.000000 0.000000 74.39000 REMARK 290 SMTRY3 14 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 15 -1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY2 15 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 15 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 16 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 16 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 16 0.000000 0.000000 -1.000000 74.39000 REMARK 290 SMTRY1 17 0.000000 0.000000 1.000000 74.39000 REMARK 290 SMTRY2 17 1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY3 17 0.000000 1.000000 0.000000 74.39000 REMARK 290 SMTRY1 18 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY2 18 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 18 0.000000 -1.000000 0.000000 74.39000 REMARK 290 SMTRY1 19 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY2 19 -1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY3 19 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY1 20 0.000000 0.000000 -1.000000 74.39000 REMARK 290 SMTRY2 20 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 20 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY1 21 0.000000 1.000000 0.000000 74.39000 REMARK 290 SMTRY2 21 0.000000 0.000000 1.000000 74.39000 REMARK 290 SMTRY3 21 1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY1 22 0.000000 -1.000000 0.000000 74.39000 REMARK 290 SMTRY2 22 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY3 22 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY1 23 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 23 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY3 23 -1.000000 0.000000 0.000000 74.39000 REMARK 290 SMTRY1 24 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 24 0.000000 0.000000 -1.000000 74.39000 REMARK 290 SMTRY3 24 1.000000 0.000000 0.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: THE BIOLOGICAL ASSEMBLY IS A TRIMER GENERATED FROM THE REMARK 300 DIMER IN THE ASYMMETRIC UNIT BY THE OPERATIONS: 1/2+X,1/2-Y,-Z AND - REMARK 300 Z,1/2+X,1/2-Y REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 17240 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 39240 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -158.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT1 2 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT2 2 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT3 2 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT1 3 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT2 3 0.000000 0.000000 1.000000 0.00000 REMARK 350 BIOMT3 3 1.000000 0.000000 0.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 57 REMARK 465 ARG A 58 REMARK 465 GLU A 59 REMARK 465 GLU A 60 REMARK 465 GLU A 61 REMARK 465 ARG A 62 REMARK 465 GLU A 63 REMARK 465 GLU A 64 REMARK 465 ASN A 241 REMARK 465 GLU A 242 REMARK 465 GLU A 243 REMARK 465 GLN A 244 REMARK 465 ILE A 245 REMARK 465 ARG A 246 REMARK 465 GLU A 247 REMARK 465 MET A 248 REMARK 465 MET A 249 REMARK 465 ARG A 250 REMARK 465 ARG A 251 REMARK 465 GLY A 252 REMARK 465 GLY A 253 REMARK 465 PHE A 254 REMARK 465 SER A 255 REMARK 465 ALA A 256 REMARK 465 GLU A 257 REMARK 465 SER A 258 REMARK 465 THR A 259 REMARK 465 SER A 260 REMARK 465 ALA A 261 REMARK 465 GLY A 342 REMARK 465 GLN A 343 REMARK 465 GLU A 344 REMARK 465 HIS A 345 REMARK 465 GLY A 346 REMARK 465 TRP A 347 REMARK 465 SER A 348 REMARK 465 SER A 349 REMARK 465 PRO A 350 REMARK 465 ARG A 351 REMARK 465 GLU A 352 REMARK 465 ARG A 353 REMARK 465 GLY A 354 REMARK 465 HIS A 355 REMARK 465 ARG A 455 REMARK 465 ARG A 456 REMARK 465 ASP A 457 REMARK 465 GLU A 458 REMARK 465 PRO A 459 REMARK 465 ARG A 460 REMARK 465 SER A 461 REMARK 465 SER A 462 REMARK 465 SER A 463 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PHE A 229 39.46 -99.78 REMARK 500 PRO A 265 156.69 -48.81 REMARK 500 ASN A 272 -73.55 -74.83 REMARK 500 LYS A 320 -18.06 -146.02 REMARK 500 ASN A 428 74.43 54.62 REMARK 500 GLU A 433 48.56 -89.01 REMARK 500 VAL A 446 -58.14 64.02 REMARK 500 ARG A 453 41.22 -147.21 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 CU A 501 CU REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 338 SG REMARK 620 2 HIS A 340 ND1 120.4 REMARK 620 3 HIS A 379 NE2 124.6 112.7 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE CU A 501 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 502 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 503 DBREF 4LEJ A 57 463 PDB 4LEJ 4LEJ 57 463 SEQRES 1 A 407 GLY ARG GLU GLU GLU ARG GLU GLU ASN PRO TYR VAL PHE SEQRES 2 A 407 HIS SER ASP ARG PHE ARG ILE ARG ALA SER SER GLU ALA SEQRES 3 A 407 GLY GLU ILE ARG ALA LEU PRO ASN PHE GLY GLU VAL SER SEQRES 4 A 407 GLU LEU LEU GLU GLY ILE SER ARG TYR ARG VAL THR CYS SEQRES 5 A 407 ILE GLU MET LYS PRO ASN THR VAL MET LEU PRO HIS TYR SEQRES 6 A 407 ILE ASP ALA LYS TRP ILE LEU TYR VAL THR GLY GLY ARG SEQRES 7 A 407 GLY TYR ILE ALA TYR VAL GLN GLN ASN GLU LEU VAL LYS SEQRES 8 A 407 ARG LYS LEU GLU GLU GLY ASP VAL PHE GLY VAL PRO SER SEQRES 9 A 407 GLY HIS THR PHE TYR LEU VAL ASN ASN ASP ASP HIS ASN SEQRES 10 A 407 SER LEU ARG ILE ALA SER LEU LEU ARG THR GLU SER THR SEQRES 11 A 407 MET ARG GLY GLU TYR GLU PRO PHE TYR VAL ALA GLY GLY SEQRES 12 A 407 ARG ASN PRO GLU THR VAL TYR SER ALA PHE SER ASP ASP SEQRES 13 A 407 VAL LEU GLU ALA ALA PHE ASN THR ASP VAL GLN LYS LEU SEQRES 14 A 407 GLU HIS ILE PHE GLY ALA HIS ARG ARG GLY VAL ILE PHE SEQRES 15 A 407 TYR ALA ASN GLU GLU GLN ILE ARG GLU MET MET ARG ARG SEQRES 16 A 407 GLY GLY PHE SER ALA GLU SER THR SER ALA SER GLU GLN SEQRES 17 A 407 PRO LYS PRO PHE ASN LEU ARG ASN GLN LYS PRO ASP PHE SEQRES 18 A 407 GLU ASN ASP ASN GLY ARG PHE THR ARG ALA GLY PRO LYS SEQRES 19 A 407 ASP ASN PRO PHE LEU ASP SER VAL ASP VAL THR VAL GLY SEQRES 20 A 407 PHE GLY VAL LEU ASN PRO GLY THR MET THR ALA PRO SER SEQRES 21 A 407 HIS ASN THR LYS ALA THR SER ILE ALA ILE VAL MET GLU SEQRES 22 A 407 GLY GLU GLY ARG ILE GLU MET ALA CYS PRO HIS LEU GLY SEQRES 23 A 407 GLN GLU HIS GLY TRP SER SER PRO ARG GLU ARG GLY HIS SEQRES 24 A 407 GLN ASP ILE ASN TYR GLU ARG VAL ARG ALA ARG LEU ARG SEQRES 25 A 407 THR GLY THR VAL TYR VAL VAL PRO ALA GLY HIS PRO ILE SEQRES 26 A 407 THR GLU ILE ALA SER THR ASN GLY ARG LEU GLU ILE LEU SEQRES 27 A 407 TRP PHE ASP ILE ASN THR SER GLY ASN GLU ARG GLU PHE SEQRES 28 A 407 LEU ALA GLY LYS ASN ASN VAL LEU GLN THR LEU GLU LYS SEQRES 29 A 407 GLU VAL ARG HIS LEU SER PHE ASN ILE PRO ARG GLY GLU SEQRES 30 A 407 GLU ILE GLU GLU VAL LEU GLN ALA GLN LYS ASP GLN VAL SEQRES 31 A 407 ILE LEU ARG GLY PRO GLN ARG GLN ARG ARG ASP GLU PRO SEQRES 32 A 407 ARG SER SER SER HET CU A 501 1 HET PO4 A 502 5 HET GOL A 503 6 HETNAM CU COPPER (II) ION HETNAM PO4 PHOSPHATE ION HETNAM GOL GLYCEROL HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 2 CU CU 2+ FORMUL 3 PO4 O4 P 3- FORMUL 4 GOL C3 H8 O3 FORMUL 5 HOH *30(H2 O) HELIX 1 1 HIS A 70 PHE A 74 5 5 HELIX 2 2 ASN A 90 SER A 95 1 6 HELIX 3 3 GLU A 96 SER A 102 5 7 HELIX 4 4 THR A 204 PHE A 209 5 6 HELIX 5 5 SER A 210 ASN A 219 1 10 HELIX 6 6 ASP A 221 HIS A 227 1 7 HELIX 7 7 LEU A 270 LYS A 274 1 5 HELIX 8 8 ASN A 292 ASP A 299 1 8 HELIX 9 9 ASN A 413 THR A 417 5 5 HELIX 10 10 GLU A 419 ASN A 428 1 10 HELIX 11 11 GLU A 433 GLN A 440 1 8 HELIX 12 12 PRO A 451 GLN A 454 5 4 SHEET 1 A 7 VAL A 68 PHE A 69 0 SHEET 2 A 7 VAL A 372 VAL A 375 -1 O VAL A 372 N PHE A 69 SHEET 3 A 7 THR A 322 GLU A 329 -1 N ALA A 325 O TYR A 373 SHEET 4 A 7 LEU A 391 ILE A 398 -1 O LEU A 394 N ILE A 326 SHEET 5 A 7 VAL A 300 LEU A 307 -1 N THR A 301 O ASP A 397 SHEET 6 A 7 GLY A 282 ALA A 287 -1 N ALA A 287 O VAL A 302 SHEET 7 A 7 PHE A 277 ASN A 279 -1 N ASN A 279 O GLY A 282 SHEET 1 B 7 ARG A 75 SER A 79 0 SHEET 2 B 7 GLY A 83 ALA A 87 -1 O ILE A 85 N ARG A 77 SHEET 3 B 7 TYR A 104 MET A 111 -1 O CYS A 108 N ARG A 86 SHEET 4 B 7 LEU A 175 THR A 183 -1 O LEU A 175 N MET A 111 SHEET 5 B 7 ALA A 124 GLY A 132 -1 N GLY A 132 O ARG A 176 SHEET 6 B 7 ASP A 154 VAL A 158 -1 O PHE A 156 N LEU A 128 SHEET 7 B 7 PHE A 268 ASN A 269 -1 O PHE A 268 N VAL A 155 SHEET 1 C 5 GLU A 144 GLU A 151 0 SHEET 2 C 5 ARG A 134 GLN A 141 -1 N GLY A 135 O LEU A 150 SHEET 3 C 5 PHE A 164 ASN A 168 -1 O VAL A 167 N TYR A 136 SHEET 4 C 5 THR A 115 MET A 117 -1 N THR A 115 O ASN A 168 SHEET 5 C 5 ILE A 237 TYR A 239 -1 O PHE A 238 N VAL A 116 SHEET 1 D 2 HIS A 120 ILE A 122 0 SHEET 2 D 2 PRO A 193 TYR A 195 -1 O PHE A 194 N TYR A 121 SHEET 1 E 2 THR A 311 THR A 313 0 SHEET 2 E 2 ILE A 447 ARG A 449 -1 O LEU A 448 N MET A 312 SHEET 1 F 2 SER A 316 ASN A 318 0 SHEET 2 F 2 ARG A 405 PHE A 407 -1 O GLU A 406 N HIS A 317 SHEET 1 G 3 GLU A 361 LEU A 367 0 SHEET 2 G 3 GLY A 332 CYS A 338 -1 N GLY A 332 O LEU A 367 SHEET 3 G 3 ILE A 381 ALA A 385 -1 O ILE A 384 N ARG A 333 LINK SG CYS A 338 CU CU A 501 1555 1555 2.36 LINK ND1 HIS A 340 CU CU A 501 1555 1555 2.10 LINK NE2 HIS A 379 CU CU A 501 1555 1555 1.94 CISPEP 1 ASN A 201 PRO A 202 0 -3.35 SITE 1 AC1 5 TYR A 67 CYS A 338 PRO A 339 HIS A 340 SITE 2 AC1 5 HIS A 379 SITE 1 AC2 4 SER A 323 GLU A 383 ARG A 405 HOH A 611 SITE 1 AC3 3 ILE A 85 HIS A 120 TYR A 191 CRYST1 148.780 148.780 148.780 90.00 90.00 90.00 I 21 3 24 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.006721 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006721 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006721 0.00000