HEADER TRANSFERASE 26-JUN-13 4LEW TITLE STRUCTURE OF HUMAN CGAS COMPND MOL_ID: 1; COMPND 2 MOLECULE: CYCLIC GMP-AMP SYNTHASE; COMPND 3 CHAIN: B, A; COMPND 4 FRAGMENT: CATALYTIC DOMAIN, UNP RESIDUES 157-522; COMPND 5 SYNONYM: CGAMP SYNTHASE, CGAS, H-CGAS, MAB-21 DOMAIN-CONTAINING COMPND 6 PROTEIN 1; COMPND 7 EC: 2.7.7.-; COMPND 8 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: MB21D1, C6ORF150; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562 KEYWDS NTASE, DNA SENSOR, TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR P.LI REVDAT 2 08-JAN-14 4LEW 1 JRNL REVDAT 1 25-DEC-13 4LEW 0 JRNL AUTH X.LI,C.SHU,G.YI,C.T.CHATON,C.L.SHELTON,J.DIAO,X.ZUO,C.C.KAO, JRNL AUTH 2 A.B.HERR,P.LI JRNL TITL CYCLIC GMP-AMP SYNTHASE IS ACTIVATED BY DOUBLE-STRANDED JRNL TITL 2 DNA-INDUCED OLIGOMERIZATION. JRNL REF IMMUNITY V. 39 1019 2013 JRNL REFN ISSN 1074-7613 JRNL PMID 24332030 JRNL DOI 10.1016/J.IMMUNI.2013.10.019 REMARK 2 REMARK 2 RESOLUTION. 2.04 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.2_1309) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VICENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE- REMARK 3 : KUNSTLEVE,LI-WEI HUNG,ROBERT IMMORMINO, REMARK 3 : TOM IOERGER,AIRLIE MCCOY,ERIK MCKEE,NIGEL REMARK 3 : MORIARTY,REETAL PAI,RANDY READ,JANE REMARK 3 : RICHARDSON,DAVID RICHARDSON,TOD ROMO,JIM REMARK 3 : SACCHETTINI,NICHOLAS SAUTER,JACOB SMITH, REMARK 3 : LAURENT STORONI,TOM TERWILLIGER,PETER REMARK 3 : ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.04 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 40.75 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.6 REMARK 3 NUMBER OF REFLECTIONS : 97840 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.180 REMARK 3 R VALUE (WORKING SET) : 0.179 REMARK 3 FREE R VALUE : 0.223 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 4.060 REMARK 3 FREE R VALUE TEST SET COUNT : 3973 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 40.7552 - 6.1870 0.98 3303 141 0.1794 0.2309 REMARK 3 2 6.1870 - 4.9135 0.99 3345 145 0.1737 0.1900 REMARK 3 3 4.9135 - 4.2932 1.00 3322 151 0.1494 0.1750 REMARK 3 4 4.2932 - 3.9010 0.99 3364 138 0.1506 0.1944 REMARK 3 5 3.9010 - 3.6216 1.00 3346 144 0.1621 0.2033 REMARK 3 6 3.6216 - 3.4082 1.00 3402 132 0.1655 0.2096 REMARK 3 7 3.4082 - 3.2375 1.00 3377 151 0.1746 0.2110 REMARK 3 8 3.2375 - 3.0967 1.00 3316 143 0.1874 0.2551 REMARK 3 9 3.0967 - 2.9775 1.00 3437 135 0.1963 0.2423 REMARK 3 10 2.9775 - 2.8748 1.00 3329 142 0.1930 0.3111 REMARK 3 11 2.8748 - 2.7849 1.00 3358 152 0.1987 0.2840 REMARK 3 12 2.7849 - 2.7053 1.00 3394 119 0.1818 0.2266 REMARK 3 13 2.7053 - 2.6341 1.00 3328 150 0.1759 0.2130 REMARK 3 14 2.6341 - 2.5699 1.00 3366 143 0.1843 0.2529 REMARK 3 15 2.5699 - 2.5114 1.00 3396 147 0.1674 0.1774 REMARK 3 16 2.5114 - 2.4580 1.00 3312 126 0.1738 0.2363 REMARK 3 17 2.4580 - 2.4088 1.00 3413 154 0.1834 0.2236 REMARK 3 18 2.4088 - 2.3634 1.00 3325 126 0.1905 0.2634 REMARK 3 19 2.3634 - 2.3212 1.00 3342 159 0.1825 0.2492 REMARK 3 20 2.3212 - 2.2818 1.00 3417 126 0.1890 0.2172 REMARK 3 21 2.2818 - 2.2450 1.00 3332 148 0.1976 0.2518 REMARK 3 22 2.2450 - 2.2105 1.00 3371 143 0.1971 0.2062 REMARK 3 23 2.2105 - 2.1780 1.00 3384 135 0.2080 0.2709 REMARK 3 24 2.1780 - 2.1473 1.00 3358 160 0.2136 0.2429 REMARK 3 25 2.1473 - 2.1183 1.00 3297 140 0.2245 0.2347 REMARK 3 26 2.1183 - 2.0908 1.00 3428 125 0.2287 0.2995 REMARK 3 27 2.0908 - 2.0647 1.00 3346 158 0.2425 0.2879 REMARK 3 28 2.0647 - 2.0398 0.95 3159 140 0.2607 0.2874 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 22.470 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 6030 REMARK 3 ANGLE : 1.122 8089 REMARK 3 CHIRALITY : 0.078 876 REMARK 3 PLANARITY : 0.006 1029 REMARK 3 DIHEDRAL : 14.809 2331 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: chain 'B' and (resid 162 through 224 ) REMARK 3 ORIGIN FOR THE GROUP (A): -22.1683 78.2677 62.0440 REMARK 3 T TENSOR REMARK 3 T11: 0.5272 T22: 0.6244 REMARK 3 T33: 0.8515 T12: -0.0946 REMARK 3 T13: 0.0095 T23: 0.1615 REMARK 3 L TENSOR REMARK 3 L11: -0.3349 L22: 4.2775 REMARK 3 L33: 0.2725 L12: 1.6196 REMARK 3 L13: -0.6800 L23: -1.3391 REMARK 3 S TENSOR REMARK 3 S11: 0.0515 S12: 0.3679 S13: 0.3033 REMARK 3 S21: -0.1688 S22: 0.2001 S23: 1.0987 REMARK 3 S31: 0.0079 S32: -0.5895 S33: -0.1327 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: chain 'B' and (resid 225 through 286 ) REMARK 3 ORIGIN FOR THE GROUP (A): -5.8414 95.0963 69.8216 REMARK 3 T TENSOR REMARK 3 T11: 0.8000 T22: 0.4165 REMARK 3 T33: 0.4472 T12: -0.1643 REMARK 3 T13: 0.1179 T23: -0.0910 REMARK 3 L TENSOR REMARK 3 L11: 2.2824 L22: 3.0337 REMARK 3 L33: 3.0973 L12: -1.7173 REMARK 3 L13: 0.9717 L23: -1.1199 REMARK 3 S TENSOR REMARK 3 S11: 0.0076 S12: -0.2467 S13: 0.4986 REMARK 3 S21: 0.6538 S22: 0.2304 S23: -0.4263 REMARK 3 S31: -1.0320 S32: 0.3256 S33: -0.2624 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: chain 'B' and (resid 287 through 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): -10.0750 80.0853 66.8447 REMARK 3 T TENSOR REMARK 3 T11: 0.2411 T22: 0.3303 REMARK 3 T33: 0.2583 T12: -0.0494 REMARK 3 T13: 0.0697 T23: -0.0190 REMARK 3 L TENSOR REMARK 3 L11: 1.6426 L22: 2.4084 REMARK 3 L33: 2.8371 L12: -0.1797 REMARK 3 L13: -0.4982 L23: 0.5771 REMARK 3 S TENSOR REMARK 3 S11: 0.0709 S12: -0.2901 S13: 0.3471 REMARK 3 S21: 0.2432 S22: 0.1090 S23: 0.2722 REMARK 3 S31: -0.4152 S32: -0.0432 S33: -0.1338 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: chain 'B' and (resid 406 through 520 ) REMARK 3 ORIGIN FOR THE GROUP (A): -12.9288 64.7875 77.9333 REMARK 3 T TENSOR REMARK 3 T11: 0.3381 T22: 0.3418 REMARK 3 T33: 0.1940 T12: -0.0383 REMARK 3 T13: 0.0290 T23: 0.0623 REMARK 3 L TENSOR REMARK 3 L11: 1.2869 L22: 1.7500 REMARK 3 L33: 4.0756 L12: -0.2065 REMARK 3 L13: -1.2268 L23: 0.8357 REMARK 3 S TENSOR REMARK 3 S11: -0.1723 S12: -0.1474 S13: -0.0721 REMARK 3 S21: 0.4677 S22: 0.0087 S23: 0.1904 REMARK 3 S31: 0.5935 S32: -0.1709 S33: 0.1003 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: chain 'A' and (resid 157 through 180 ) REMARK 3 ORIGIN FOR THE GROUP (A): 22.6698 56.2283 41.2551 REMARK 3 T TENSOR REMARK 3 T11: 0.2513 T22: 0.2498 REMARK 3 T33: 0.4041 T12: 0.0109 REMARK 3 T13: -0.0306 T23: 0.0772 REMARK 3 L TENSOR REMARK 3 L11: 2.5566 L22: 8.1525 REMARK 3 L33: 2.9931 L12: 1.2226 REMARK 3 L13: 0.0565 L23: 1.2297 REMARK 3 S TENSOR REMARK 3 S11: 0.3084 S12: -0.1272 S13: -0.3783 REMARK 3 S21: 0.3818 S22: -0.0344 S23: -0.6256 REMARK 3 S31: 0.0235 S32: 0.3017 S33: -0.1587 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: chain 'A' and (resid 181 through 272 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.7733 86.1727 33.5728 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.1761 REMARK 3 T33: 0.3822 T12: 0.0044 REMARK 3 T13: 0.0098 T23: -0.0215 REMARK 3 L TENSOR REMARK 3 L11: 1.9399 L22: 3.0203 REMARK 3 L33: 1.6007 L12: 1.7902 REMARK 3 L13: 0.8479 L23: 1.0233 REMARK 3 S TENSOR REMARK 3 S11: 0.0692 S12: -0.0472 S13: 0.0178 REMARK 3 S21: -0.1543 S22: 0.0027 S23: -0.4532 REMARK 3 S31: -0.1820 S32: 0.0090 S33: 0.0005 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: chain 'A' and (resid 273 through 405 ) REMARK 3 ORIGIN FOR THE GROUP (A): 8.5367 77.2835 35.0272 REMARK 3 T TENSOR REMARK 3 T11: 0.1523 T22: 0.1901 REMARK 3 T33: 0.2517 T12: -0.0108 REMARK 3 T13: 0.0363 T23: -0.0553 REMARK 3 L TENSOR REMARK 3 L11: 1.3081 L22: 3.1624 REMARK 3 L33: 0.9591 L12: 0.3895 REMARK 3 L13: -0.4564 L23: -0.1925 REMARK 3 S TENSOR REMARK 3 S11: -0.0935 S12: -0.0117 S13: 0.1758 REMARK 3 S21: -0.3181 S22: 0.1880 S23: -0.5100 REMARK 3 S31: -0.0922 S32: 0.0606 S33: -0.1030 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: chain 'A' and (resid 406 through 520 ) REMARK 3 ORIGIN FOR THE GROUP (A): 10.0282 57.4911 29.2675 REMARK 3 T TENSOR REMARK 3 T11: 0.2387 T22: 0.0986 REMARK 3 T33: 0.1735 T12: 0.0383 REMARK 3 T13: 0.0212 T23: -0.0035 REMARK 3 L TENSOR REMARK 3 L11: 2.1401 L22: 1.7068 REMARK 3 L33: 3.0036 L12: -0.4061 REMARK 3 L13: -0.3579 L23: 0.2789 REMARK 3 S TENSOR REMARK 3 S11: 0.0389 S12: 0.1727 S13: -0.1970 REMARK 3 S21: -0.4038 S22: -0.1146 S23: -0.1080 REMARK 3 S31: 0.1856 S32: 0.1477 S33: 0.0355 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LEW COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 06-AUG-13. REMARK 100 THE RCSB ID CODE IS RCSB080542. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 153 REMARK 200 PH : 7.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL7-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.1 REMARK 200 MONOCHROMATOR : SI REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : NULL REMARK 200 RESOLUTION RANGE HIGH (A) : 2.040 REMARK 200 RESOLUTION RANGE LOW (A) : 43.100 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.7 REMARK 200 DATA REDUNDANCY : 3.500 REMARK 200 R MERGE (I) : 0.08300 REMARK 200 R SYM (I) : 0.08300 REMARK 200 FOR THE DATA SET : 31.2000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.04 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.08 REMARK 200 COMPLETENESS FOR SHELL (%) : 99.5 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SOLVE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.90 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.32 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 15-20% PEG 3350, 0.2 M A.S., PH 7.0, REMARK 280 VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 277K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 1 21 1 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 1.000000 0.000000 55.74000 REMARK 290 SMTRY3 2 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASP B 157 REMARK 465 ALA B 158 REMARK 465 ALA B 159 REMARK 465 PRO B 160 REMARK 465 GLY B 161 REMARK 465 GLU B 521 REMARK 465 PHE B 522 REMARK 465 SER A 213 REMARK 465 TYR A 214 REMARK 465 GLU A 521 REMARK 465 PHE A 522 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS B 427 CG CD CE NZ REMARK 470 LYS A 427 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O LEU B 209 O HOH B 756 2.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA B 222 72.34 56.68 REMARK 500 ARG B 236 96.29 30.60 REMARK 500 SER B 243 -134.45 55.15 REMARK 500 ARG B 246 -24.76 63.80 REMARK 500 ARG B 255 165.93 60.78 REMARK 500 ASN B 256 46.28 -172.71 REMARK 500 PRO B 257 36.40 10.62 REMARK 500 ASP B 293 -106.65 59.22 REMARK 500 THR B 294 -107.22 -120.06 REMARK 500 LYS B 301 -153.85 -89.14 REMARK 500 ARG B 302 -122.49 -128.02 REMARK 500 SER B 313 101.49 -54.25 REMARK 500 GLU B 314 12.79 161.12 REMARK 500 TRP B 343 -67.77 -105.70 REMARK 500 SER B 345 152.90 106.69 REMARK 500 ASN B 368 -19.88 66.26 REMARK 500 GLU B 372 151.83 95.55 REMARK 500 PHE B 516 70.21 52.74 REMARK 500 ARG A 176 24.32 -74.17 REMARK 500 GLU A 216 111.63 -172.23 REMARK 500 ARG A 246 -27.71 71.30 REMARK 500 ARG A 302 -119.77 -115.60 REMARK 500 SER A 313 -109.37 53.11 REMARK 500 TRP A 343 -68.15 -107.03 REMARK 500 SER A 345 156.37 104.89 REMARK 500 LYS A 362 151.44 176.68 REMARK 500 LYS A 365 32.33 -74.85 REMARK 500 ASN A 368 24.62 -163.12 REMARK 500 GLN A 371 41.41 36.25 REMARK 500 PHE A 516 60.81 38.10 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: NON-CIS, NON-TRANS REMARK 500 REMARK 500 THE FOLLOWING PEPTIDE BONDS DEVIATE SIGNIFICANTLY FROM BOTH REMARK 500 CIS AND TRANS CONFORMATION. CIS BONDS, IF ANY, ARE LISTED REMARK 500 ON CISPEP RECORDS. TRANS IS DEFINED AS 180 +/- 30 AND REMARK 500 CIS IS DEFINED AS 0 +/- 30 DEGREES. REMARK 500 MODEL OMEGA REMARK 500 ILE B 291 LYS B 292 148.54 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 390 NE2 REMARK 620 2 CYS A 396 SG 110.9 REMARK 620 3 CYS A 397 SG 110.1 129.3 REMARK 620 4 CYS A 404 SG 93.1 99.8 106.5 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN B 601 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS B 390 NE2 REMARK 620 2 CYS B 396 SG 113.8 REMARK 620 3 CYS B 397 SG 106.8 129.3 REMARK 620 4 CYS B 404 SG 95.8 98.7 106.2 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN B 601 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 601 DBREF 4LEW B 157 522 UNP Q8N884 CGAS_HUMAN 157 522 DBREF 4LEW A 157 522 UNP Q8N884 CGAS_HUMAN 157 522 SEQRES 1 B 366 ASP ALA ALA PRO GLY ALA SER LYS LEU ARG ALA VAL LEU SEQRES 2 B 366 GLU LYS LEU LYS LEU SER ARG ASP ASP ILE SER THR ALA SEQRES 3 B 366 ALA GLY MSE VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU SEQRES 4 B 366 ARG LEU LYS CYS ASP SER ALA PHE ARG GLY VAL GLY LEU SEQRES 5 B 366 LEU ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER SEQRES 6 B 366 ALA PRO ASN GLU PHE ASP VAL MSE PHE LYS LEU GLU VAL SEQRES 7 B 366 PRO ARG ILE GLN LEU GLU GLU TYR SER ASN THR ARG ALA SEQRES 8 B 366 TYR TYR PHE VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN SEQRES 9 B 366 PRO LEU SER GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SEQRES 10 B 366 SER LYS MSE LEU SER LYS PHE ARG LYS ILE ILE LYS GLU SEQRES 11 B 366 GLU ILE ASN ASP ILE LYS ASP THR ASP VAL ILE MSE LYS SEQRES 12 B 366 ARG LYS ARG GLY GLY SER PRO ALA VAL THR LEU LEU ILE SEQRES 13 B 366 SER GLU LYS ILE SER VAL ASP ILE THR LEU ALA LEU GLU SEQRES 14 B 366 SER LYS SER SER TRP PRO ALA SER THR GLN GLU GLY LEU SEQRES 15 B 366 ARG ILE GLN ASN TRP LEU SER ALA LYS VAL ARG LYS GLN SEQRES 16 B 366 LEU ARG LEU LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA SEQRES 17 B 366 LYS GLU GLY ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SEQRES 18 B 366 SER PHE SER HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS SEQRES 19 B 366 GLY LYS SER LYS THR CYS CYS GLU ASN LYS GLU GLU LYS SEQRES 20 B 366 CYS CYS ARG LYS ASP CYS LEU LYS LEU MSE LYS TYR LEU SEQRES 21 B 366 LEU GLU GLN LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS SEQRES 22 B 366 LEU ASP LYS PHE SER SER TYR HIS VAL LYS THR ALA PHE SEQRES 23 B 366 PHE HIS VAL CYS THR GLN ASN PRO GLN ASP SER GLN TRP SEQRES 24 B 366 ASP ARG LYS ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL SEQRES 25 B 366 THR TYR PHE LEU GLN CYS LEU ARG THR GLU LYS LEU GLU SEQRES 26 B 366 ASN TYR PHE ILE PRO GLU PHE ASN LEU PHE SER SER ASN SEQRES 27 B 366 LEU ILE ASP LYS ARG SER LYS GLU PHE LEU THR LYS GLN SEQRES 28 B 366 ILE GLU TYR GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP SEQRES 29 B 366 GLU PHE SEQRES 1 A 366 ASP ALA ALA PRO GLY ALA SER LYS LEU ARG ALA VAL LEU SEQRES 2 A 366 GLU LYS LEU LYS LEU SER ARG ASP ASP ILE SER THR ALA SEQRES 3 A 366 ALA GLY MSE VAL LYS GLY VAL VAL ASP HIS LEU LEU LEU SEQRES 4 A 366 ARG LEU LYS CYS ASP SER ALA PHE ARG GLY VAL GLY LEU SEQRES 5 A 366 LEU ASN THR GLY SER TYR TYR GLU HIS VAL LYS ILE SER SEQRES 6 A 366 ALA PRO ASN GLU PHE ASP VAL MSE PHE LYS LEU GLU VAL SEQRES 7 A 366 PRO ARG ILE GLN LEU GLU GLU TYR SER ASN THR ARG ALA SEQRES 8 A 366 TYR TYR PHE VAL LYS PHE LYS ARG ASN PRO LYS GLU ASN SEQRES 9 A 366 PRO LEU SER GLN PHE LEU GLU GLY GLU ILE LEU SER ALA SEQRES 10 A 366 SER LYS MSE LEU SER LYS PHE ARG LYS ILE ILE LYS GLU SEQRES 11 A 366 GLU ILE ASN ASP ILE LYS ASP THR ASP VAL ILE MSE LYS SEQRES 12 A 366 ARG LYS ARG GLY GLY SER PRO ALA VAL THR LEU LEU ILE SEQRES 13 A 366 SER GLU LYS ILE SER VAL ASP ILE THR LEU ALA LEU GLU SEQRES 14 A 366 SER LYS SER SER TRP PRO ALA SER THR GLN GLU GLY LEU SEQRES 15 A 366 ARG ILE GLN ASN TRP LEU SER ALA LYS VAL ARG LYS GLN SEQRES 16 A 366 LEU ARG LEU LYS PRO PHE TYR LEU VAL PRO LYS HIS ALA SEQRES 17 A 366 LYS GLU GLY ASN GLY PHE GLN GLU GLU THR TRP ARG LEU SEQRES 18 A 366 SER PHE SER HIS ILE GLU LYS GLU ILE LEU ASN ASN HIS SEQRES 19 A 366 GLY LYS SER LYS THR CYS CYS GLU ASN LYS GLU GLU LYS SEQRES 20 A 366 CYS CYS ARG LYS ASP CYS LEU LYS LEU MSE LYS TYR LEU SEQRES 21 A 366 LEU GLU GLN LEU LYS GLU ARG PHE LYS ASP LYS LYS HIS SEQRES 22 A 366 LEU ASP LYS PHE SER SER TYR HIS VAL LYS THR ALA PHE SEQRES 23 A 366 PHE HIS VAL CYS THR GLN ASN PRO GLN ASP SER GLN TRP SEQRES 24 A 366 ASP ARG LYS ASP LEU GLY LEU CYS PHE ASP ASN CYS VAL SEQRES 25 A 366 THR TYR PHE LEU GLN CYS LEU ARG THR GLU LYS LEU GLU SEQRES 26 A 366 ASN TYR PHE ILE PRO GLU PHE ASN LEU PHE SER SER ASN SEQRES 27 A 366 LEU ILE ASP LYS ARG SER LYS GLU PHE LEU THR LYS GLN SEQRES 28 A 366 ILE GLU TYR GLU ARG ASN ASN GLU PHE PRO VAL PHE ASP SEQRES 29 A 366 GLU PHE MODRES 4LEW MSE B 185 MET SELENOMETHIONINE MODRES 4LEW MSE B 229 MET SELENOMETHIONINE MODRES 4LEW MSE B 276 MET SELENOMETHIONINE MODRES 4LEW MSE B 298 MET SELENOMETHIONINE MODRES 4LEW MSE B 413 MET SELENOMETHIONINE MODRES 4LEW MSE A 185 MET SELENOMETHIONINE MODRES 4LEW MSE A 229 MET SELENOMETHIONINE MODRES 4LEW MSE A 276 MET SELENOMETHIONINE MODRES 4LEW MSE A 298 MET SELENOMETHIONINE MODRES 4LEW MSE A 413 MET SELENOMETHIONINE HET MSE B 185 8 HET MSE B 229 8 HET MSE B 276 8 HET MSE B 298 8 HET MSE B 413 8 HET MSE A 185 8 HET MSE A 229 8 HET MSE A 276 8 HET MSE A 298 8 HET MSE A 413 8 HET ZN B 601 1 HET ZN A 601 1 HETNAM MSE SELENOMETHIONINE HETNAM ZN ZINC ION FORMUL 1 MSE 10(C5 H11 N O2 SE) FORMUL 3 ZN 2(ZN 2+) FORMUL 5 HOH *363(H2 O) HELIX 1 1 ALA B 162 LEU B 174 1 13 HELIX 2 2 SER B 175 LYS B 198 1 24 HELIX 3 3 LEU B 262 GLN B 264 5 3 HELIX 4 4 SER B 272 GLU B 287 1 16 HELIX 5 5 PRO B 331 GLN B 335 5 5 HELIX 6 6 SER B 345 LEU B 354 1 10 HELIX 7 7 PHE B 379 ASN B 389 1 11 HELIX 8 8 ASN B 399 LYS B 403 5 5 HELIX 9 9 CYS B 405 PHE B 424 1 20 HELIX 10 10 SER B 434 ASN B 449 1 16 HELIX 11 11 GLN B 451 TRP B 455 5 5 HELIX 12 12 ASP B 456 LYS B 458 5 3 HELIX 13 13 ASP B 459 GLU B 478 1 20 HELIX 14 14 ASP B 497 ASN B 514 1 18 HELIX 15 15 GLU B 515 ASP B 520 5 6 HELIX 16 16 GLY A 161 ARG A 176 1 16 HELIX 17 17 SER A 180 CYS A 199 1 20 HELIX 18 18 LEU A 262 GLN A 264 5 3 HELIX 19 19 SER A 272 ASN A 289 1 18 HELIX 20 20 PRO A 331 GLN A 335 5 5 HELIX 21 21 SER A 345 LEU A 354 1 10 HELIX 22 22 PHE A 379 ASN A 389 1 11 HELIX 23 23 CYS A 405 PHE A 424 1 20 HELIX 24 24 SER A 434 ASN A 449 1 16 HELIX 25 25 GLN A 451 TRP A 455 5 5 HELIX 26 26 ASP A 456 LYS A 458 5 3 HELIX 27 27 ASP A 459 GLU A 478 1 20 HELIX 28 28 ASP A 497 ASN A 514 1 18 HELIX 29 29 PHE A 516 ASP A 520 5 5 SHEET 1 A 7 VAL B 206 LEU B 209 0 SHEET 2 A 7 GLU B 225 GLU B 233 -1 O MSE B 229 N LEU B 209 SHEET 3 A 7 ILE B 316 SER B 326 1 O ALA B 323 N PHE B 230 SHEET 4 A 7 PHE B 357 PRO B 361 -1 O PHE B 357 N SER B 326 SHEET 5 A 7 TRP B 375 SER B 378 -1 O ARG B 376 N VAL B 360 SHEET 6 A 7 TYR B 248 PHE B 253 -1 N TYR B 249 O TRP B 375 SHEET 7 A 7 ILE B 237 GLU B 241 -1 N GLU B 240 O PHE B 250 SHEET 1 B 5 VAL B 206 LEU B 209 0 SHEET 2 B 5 GLU B 225 GLU B 233 -1 O MSE B 229 N LEU B 209 SHEET 3 B 5 ILE B 316 SER B 326 1 O ALA B 323 N PHE B 230 SHEET 4 B 5 VAL B 308 ILE B 312 -1 N LEU B 310 O VAL B 318 SHEET 5 B 5 VAL B 296 LYS B 299 -1 N ILE B 297 O LEU B 311 SHEET 1 C 2 LEU B 266 GLU B 267 0 SHEET 2 C 2 ILE B 270 LEU B 271 -1 O ILE B 270 N GLU B 267 SHEET 1 D 7 VAL A 206 LEU A 209 0 SHEET 2 D 7 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 D 7 ILE A 316 SER A 326 1 O ASP A 319 N VAL A 228 SHEET 4 D 7 PHE A 357 PRO A 361 -1 O PHE A 357 N SER A 326 SHEET 5 D 7 TRP A 375 SER A 378 -1 O ARG A 376 N VAL A 360 SHEET 6 D 7 TYR A 248 PHE A 253 -1 N TYR A 249 O TRP A 375 SHEET 7 D 7 ILE A 237 GLU A 241 -1 N GLU A 240 O PHE A 250 SHEET 1 E 5 VAL A 206 LEU A 209 0 SHEET 2 E 5 GLU A 225 GLU A 233 -1 O LYS A 231 N GLY A 207 SHEET 3 E 5 ILE A 316 SER A 326 1 O ASP A 319 N VAL A 228 SHEET 4 E 5 VAL A 308 ILE A 312 -1 N VAL A 308 O ILE A 320 SHEET 5 E 5 VAL A 296 LYS A 299 -1 N ILE A 297 O LEU A 311 SHEET 1 F 2 LEU A 266 GLU A 267 0 SHEET 2 F 2 ILE A 270 LEU A 271 -1 O ILE A 270 N GLU A 267 LINK C GLY B 184 N MSE B 185 1555 1555 1.33 LINK C MSE B 185 N VAL B 186 1555 1555 1.33 LINK C VAL B 228 N MSE B 229 1555 1555 1.33 LINK C MSE B 229 N PHE B 230 1555 1555 1.33 LINK C LYS B 275 N MSE B 276 1555 1555 1.33 LINK C MSE B 276 N LEU B 277 1555 1555 1.33 LINK C ILE B 297 N MSE B 298 1555 1555 1.33 LINK C MSE B 298 N LYS B 299 1555 1555 1.33 LINK C LEU B 412 N MSE B 413 1555 1555 1.33 LINK C MSE B 413 N LYS B 414 1555 1555 1.33 LINK C GLY A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N VAL A 186 1555 1555 1.33 LINK C VAL A 228 N MSE A 229 1555 1555 1.33 LINK C MSE A 229 N PHE A 230 1555 1555 1.33 LINK C LYS A 275 N MSE A 276 1555 1555 1.33 LINK C MSE A 276 N LEU A 277 1555 1555 1.33 LINK C ILE A 297 N MSE A 298 1555 1555 1.33 LINK C MSE A 298 N LYS A 299 1555 1555 1.33 LINK C LEU A 412 N MSE A 413 1555 1555 1.33 LINK C MSE A 413 N LYS A 414 1555 1555 1.33 LINK NE2 HIS A 390 ZN ZN A 601 1555 1555 2.09 LINK NE2 HIS B 390 ZN ZN B 601 1555 1555 2.11 LINK SG CYS B 396 ZN ZN B 601 1555 1555 2.30 LINK SG CYS A 396 ZN ZN A 601 1555 1555 2.33 LINK SG CYS B 397 ZN ZN B 601 1555 1555 2.33 LINK SG CYS A 397 ZN ZN A 601 1555 1555 2.33 LINK SG CYS A 404 ZN ZN A 601 1555 1555 2.34 LINK SG CYS B 404 ZN ZN B 601 1555 1555 2.39 CISPEP 1 THR A 211 GLY A 212 0 -2.09 SITE 1 AC1 4 HIS B 390 CYS B 396 CYS B 397 CYS B 404 SITE 1 AC2 4 HIS A 390 CYS A 396 CYS A 397 CYS A 404 CRYST1 46.815 111.480 76.414 90.00 92.73 90.00 P 1 21 1 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.021361 0.000000 0.001018 0.00000 SCALE2 0.000000 0.008970 0.000000 0.00000 SCALE3 0.000000 0.000000 0.013101 0.00000