HEADER TRANSFERASE 26-JUN-13 4LFE TITLE CRYSTAL STRUCTURE OF GERANYLGERANYL DIPHOSPHATE SYNTHASE SUB1274 TITLE 2 (TARGET EFI-509455) FROM STREPTOCOCCUS UBERIS 0140J WITH BOUND TITLE 3 MAGNESIUM AND ISOPENTYL DIPHOSPHATE, PARTIALLY LIGANDED COMPLEX; COMPND MOL_ID: 1; COMPND 2 MOLECULE: GERANYLGERANYL DIPHOSPHATE SYNTHASE; COMPND 3 CHAIN: A, B; COMPND 4 EC: 2.5.1.10; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: STREPTOCOCCUS UBERIS; SOURCE 3 ORGANISM_TAXID: 218495; SOURCE 4 STRAIN: 0140J; SOURCE 5 GENE: FPS, SUB1274; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) RIL KEYWDS ISOPRENOID SYNTHASE, ENZYME FUNCTION INITIATIVE, EFI, TRANSFERASE, KEYWDS 2 STRUCTURAL GENOMICS EXPDTA X-RAY DIFFRACTION AUTHOR Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL,E.WASHINGTON, AUTHOR 2 A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS,H.J.IMKER,N.AL OBAIDI, AUTHOR 3 M.STEAD,J.LOVE,C.D.POULTER,J.A.GERLT,S.C.ALMO,ENZYME FUNCTION AUTHOR 4 INITIATIVE (EFI) REVDAT 2 20-SEP-23 4LFE 1 REMARK SEQADV LINK REVDAT 1 10-JUL-13 4LFE 0 JRNL AUTH Y.PATSKOVSKY,R.TORO,R.BHOSLE,B.HILLERICH,R.D.SEIDEL, JRNL AUTH 2 E.WASHINGTON,A.SCOTT GLENN,S.CHOWDHURY,B.EVANS,J.HAMMONDS, JRNL AUTH 3 H.J.IMKER,N.AL OBAIDI,M.STEAD,J.LOVE,C.D.POULTER,J.A.GERLT, JRNL AUTH 4 S.C.ALMO JRNL TITL CRYSTAL STRUCTURE OF GERANYLGERANYL DIPHOSPHATE SYNTHASE JRNL TITL 2 FROM STREPTOCOCCUS UBERIS 0140J JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 1.95 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.95 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 46.82 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 97.7 REMARK 3 NUMBER OF REFLECTIONS : 46768 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.208 REMARK 3 R VALUE (WORKING SET) : 0.207 REMARK 3 FREE R VALUE : 0.236 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1510 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.95 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.00 REMARK 3 REFLECTION IN BIN (WORKING SET) : 3429 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 97.62 REMARK 3 BIN R VALUE (WORKING SET) : 0.2920 REMARK 3 BIN FREE R VALUE SET COUNT : 98 REMARK 3 BIN FREE R VALUE : 0.3230 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4368 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 47 REMARK 3 SOLVENT ATOMS : 226 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 24.88 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 37.71 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -2.73000 REMARK 3 B22 (A**2) : 6.54000 REMARK 3 B33 (A**2) : -3.81000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.168 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.148 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.121 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 8.413 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.944 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4518 ; 0.006 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 4417 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6093 ; 1.091 ; 1.989 REMARK 3 BOND ANGLES OTHERS (DEGREES): 10156 ; 0.728 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 567 ; 4.683 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 198 ;37.717 ;25.000 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 813 ;14.481 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.256 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 707 ; 0.059 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5035 ; 0.004 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 969 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 2253 ; 5.185 ; 2.378 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 2252 ; 5.172 ; 2.375 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 2813 ; 6.160 ; 3.965 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): 2814 ; 6.165 ; 3.967 REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 2265 ; 8.448 ; 3.140 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): 2266 ; 8.447 ; 3.141 REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): 3277 ;10.537 ; 4.882 REMARK 3 LONG RANGE B REFINED ATOMS (A**2): 5396 ;11.170 ;11.548 REMARK 3 LONG RANGE B OTHER ATOMS (A**2): 5294 ;11.216 ;11.298 REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 2 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 0 A 289 REMARK 3 ORIGIN FOR THE GROUP (A): 61.8746 69.4380 26.0976 REMARK 3 T TENSOR REMARK 3 T11: 0.1919 T22: 0.0810 REMARK 3 T33: 0.1775 T12: 0.0006 REMARK 3 T13: 0.0175 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 1.2685 L22: 0.6489 REMARK 3 L33: 2.0409 L12: 0.1586 REMARK 3 L13: 0.9968 L23: 0.3985 REMARK 3 S TENSOR REMARK 3 S11: 0.0261 S12: -0.0569 S13: -0.0865 REMARK 3 S21: -0.0293 S22: -0.0025 S23: -0.1278 REMARK 3 S31: 0.1025 S32: 0.2415 S33: -0.0236 REMARK 3 REMARK 3 TLS GROUP : 2 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : B 2 B 289 REMARK 3 ORIGIN FOR THE GROUP (A): 35.7144 77.1885 10.3189 REMARK 3 T TENSOR REMARK 3 T11: 0.1507 T22: 0.0096 REMARK 3 T33: 0.1450 T12: -0.0047 REMARK 3 T13: 0.0059 T23: -0.0010 REMARK 3 L TENSOR REMARK 3 L11: 1.5854 L22: 0.6697 REMARK 3 L33: 1.4434 L12: -0.2303 REMARK 3 L13: 0.2403 L23: 0.2448 REMARK 3 S TENSOR REMARK 3 S11: -0.0020 S12: 0.0041 S13: 0.1346 REMARK 3 S21: 0.0098 S22: -0.0335 S23: 0.0485 REMARK 3 S31: -0.0432 S32: -0.1116 S33: 0.0355 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LFE COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 27-JUN-13. REMARK 100 THE DEPOSITION ID IS D_1000080560. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 18-APR-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : NULL REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : NSLS REMARK 200 BEAMLINE : X29A REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.075 REMARK 200 MONOCHROMATOR : ROSENBAUM-ROCK DOUBLE CRYSTAL REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 48833 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.950 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 200 DATA REDUNDANCY : 8.200 REMARK 200 R MERGE (I) : 0.08200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 12.6000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.95 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.98 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.70 REMARK 200 R MERGE FOR SHELL (I) : 0.52000 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.100 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4GP1 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 52.56 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.59 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.2M MAGNESIUM CHLORIDE, 0.1M MES REMARK 280 -NAOH, PH 6.5, 25% PEG4000, VAPOR DIFFUSION, SITTING DROP, REMARK 280 TEMPERATURE 298K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 35.39900 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 62.31000 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 37.89450 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 62.31000 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 35.39900 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 37.89450 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4370 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 22160 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -51.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 ASN A 221 REMARK 465 PHE A 222 REMARK 465 GLU A 223 REMARK 465 GLU A 224 REMARK 465 ILE A 225 REMARK 465 GLY A 226 REMARK 465 LYS A 227 REMARK 465 THR A 228 REMARK 465 PRO A 229 REMARK 465 LYS A 230 REMARK 465 LYS A 231 REMARK 465 ASP A 232 REMARK 465 VAL A 233 REMARK 465 MET A 234 REMARK 465 ALA A 235 REMARK 465 GLU A 236 REMARK 465 SER B 0 REMARK 465 MET B 1 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 ARG A 90 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 156 CG CD OE1 OE2 REMARK 470 LYS A 158 CG CD CE NZ REMARK 470 LYS A 159 CG CD CE NZ REMARK 470 LEU A 160 CG CD1 CD2 REMARK 470 LYS A 237 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ALA A 35 51.86 -93.46 REMARK 500 MET A 83 -115.29 -102.76 REMARK 500 PHE A 99 -98.98 -112.59 REMARK 500 THR A 219 22.90 -147.33 REMARK 500 MET A 238 75.72 -108.07 REMARK 500 MET B 83 -106.92 -100.83 REMARK 500 PHE B 99 -99.75 -117.48 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 302 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD1 REMARK 620 2 ASP A 84 OD2 91.1 REMARK 620 3 IPE A 301 O1A 93.6 83.7 REMARK 620 4 HOH A 436 O 169.9 88.5 96.3 REMARK 620 5 HOH A 454 O 92.5 176.3 96.0 87.9 REMARK 620 6 HOH A 471 O 86.6 96.2 179.8 83.5 84.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG A 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP A 78 OD2 REMARK 620 2 ASP A 84 OD2 93.7 REMARK 620 3 IPE A 301 O2B 92.2 171.2 REMARK 620 4 IPE A 301 O1A 90.8 84.6 88.8 REMARK 620 5 HOH A 419 O 84.0 100.7 86.4 172.7 REMARK 620 6 HOH A 452 O 163.3 71.2 102.1 81.1 105.3 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 304 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 78 OD1 REMARK 620 2 ASP B 84 OD2 85.0 REMARK 620 3 IPE B 301 O1A 95.7 78.9 REMARK 620 4 HOH B 419 O 85.7 100.0 178.1 REMARK 620 5 HOH B 458 O 167.7 92.6 95.6 82.8 REMARK 620 6 HOH B 496 O 94.3 179.3 101.1 80.0 88.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 305 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 78 OD2 REMARK 620 2 ASP B 84 OD2 86.7 REMARK 620 3 IPE B 301 O3B 88.7 166.9 REMARK 620 4 IPE B 301 O1A 88.1 78.7 88.9 REMARK 620 5 HOH B 431 O 88.2 100.1 92.0 176.2 REMARK 620 6 HOH B 474 O 178.8 92.2 92.4 91.8 91.9 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 MG B 303 MG REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ASP B 213 OD2 REMARK 620 2 IPE B 301 O2B 104.9 REMARK 620 3 IPE B 301 O2A 89.6 88.3 REMARK 620 4 HOH B 416 O 86.8 93.8 176.2 REMARK 620 5 HOH B 420 O 165.0 88.0 98.4 84.8 REMARK 620 6 HOH B 436 O 85.9 169.1 91.0 87.5 81.3 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE A 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG A 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE B 301 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE IPE B 302 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC6 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 303 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC7 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 304 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC8 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE MG B 305 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LFG RELATED DB: PDB REMARK 900 RELATED ID: EFI-509455 RELATED DB: TARGETTRACK DBREF 4LFE A 1 289 UNP B9DUT7 B9DUT7_STRU0 1 289 DBREF 4LFE B 1 289 UNP B9DUT7 B9DUT7_STRU0 1 289 SEQADV 4LFE SER A 0 UNP B9DUT7 EXPRESSION TAG SEQADV 4LFE SER B 0 UNP B9DUT7 EXPRESSION TAG SEQRES 1 A 290 SER MET ASP LYS LEU LYS LYS ILE ASP GLN THR ILE HIS SEQRES 2 A 290 ALA PHE TYR CYS GLU LYS ALA VAL ILE SER GLU LYS LEU SEQRES 3 A 290 ASN GLU ALA VAL LEU TYR SER ILE ASN ALA GLY GLY LYS SEQRES 4 A 290 ARG ILE ARG PRO ILE LEU PHE LEU GLU VAL ILE GLU ALA SEQRES 5 A 290 LEU GLN ILE PRO LEU THR GLU SER HIS PHE LYS ALA ALA SEQRES 6 A 290 ALA ALA LEU GLU MET ILE HIS THR GLY SER LEU ILE HIS SEQRES 7 A 290 ASP ASP LEU PRO ALA MET ASP ASN ASP ASP TYR ARG ARG SEQRES 8 A 290 GLY GLN LEU THR ASN HIS LYS LYS PHE ASP GLU ALA THR SEQRES 9 A 290 ALA ILE LEU ALA GLY ASP SER LEU PHE LEU ASP ALA PHE SEQRES 10 A 290 GLY MET LEU ALA GLU THR ASP PHE PRO THR ASP VAL THR SEQRES 11 A 290 VAL ASP LEU VAL ARG SER LEU SER SER ALA SER GLY THR SEQRES 12 A 290 PHE GLY MET VAL GLY GLY GLN MET LEU ASP MET ALA ALA SEQRES 13 A 290 GLU GLY LYS LYS LEU ASN LEU LYS ASN LEU GLN LEU ILE SEQRES 14 A 290 HIS ARG HIS LYS THR GLY GLN LEU LEU ALA TYR PRO PHE SEQRES 15 A 290 TRP ALA ALA ALA ARG VAL ALA GLN LEU ASP GLU ASN LEU SEQRES 16 A 290 LEU ALA THR PHE LEU GLU ILE GLY MET ILE ILE GLY LEU SEQRES 17 A 290 ALA PHE GLN VAL ARG ASP ASP ILE LEU ASP ILE THR ALA SEQRES 18 A 290 ASN PHE GLU GLU ILE GLY LYS THR PRO LYS LYS ASP VAL SEQRES 19 A 290 MET ALA GLU LYS MET THR TYR PRO HIS LEU LEU GLY LEU SEQRES 20 A 290 ASN GLU SER TYR GLN ILE LEU ASP GLU SER LEU ASP GLN SEQRES 21 A 290 ALA GLU ALA ILE LEU ARG LYS LEU SER ASP GLU ILE ALA SEQRES 22 A 290 PHE ALA PRO GLN LYS ILE LEU SER LEU ILE GLU ARG LEU SEQRES 23 A 290 ARG LEU ASP ALA SEQRES 1 B 290 SER MET ASP LYS LEU LYS LYS ILE ASP GLN THR ILE HIS SEQRES 2 B 290 ALA PHE TYR CYS GLU LYS ALA VAL ILE SER GLU LYS LEU SEQRES 3 B 290 ASN GLU ALA VAL LEU TYR SER ILE ASN ALA GLY GLY LYS SEQRES 4 B 290 ARG ILE ARG PRO ILE LEU PHE LEU GLU VAL ILE GLU ALA SEQRES 5 B 290 LEU GLN ILE PRO LEU THR GLU SER HIS PHE LYS ALA ALA SEQRES 6 B 290 ALA ALA LEU GLU MET ILE HIS THR GLY SER LEU ILE HIS SEQRES 7 B 290 ASP ASP LEU PRO ALA MET ASP ASN ASP ASP TYR ARG ARG SEQRES 8 B 290 GLY GLN LEU THR ASN HIS LYS LYS PHE ASP GLU ALA THR SEQRES 9 B 290 ALA ILE LEU ALA GLY ASP SER LEU PHE LEU ASP ALA PHE SEQRES 10 B 290 GLY MET LEU ALA GLU THR ASP PHE PRO THR ASP VAL THR SEQRES 11 B 290 VAL ASP LEU VAL ARG SER LEU SER SER ALA SER GLY THR SEQRES 12 B 290 PHE GLY MET VAL GLY GLY GLN MET LEU ASP MET ALA ALA SEQRES 13 B 290 GLU GLY LYS LYS LEU ASN LEU LYS ASN LEU GLN LEU ILE SEQRES 14 B 290 HIS ARG HIS LYS THR GLY GLN LEU LEU ALA TYR PRO PHE SEQRES 15 B 290 TRP ALA ALA ALA ARG VAL ALA GLN LEU ASP GLU ASN LEU SEQRES 16 B 290 LEU ALA THR PHE LEU GLU ILE GLY MET ILE ILE GLY LEU SEQRES 17 B 290 ALA PHE GLN VAL ARG ASP ASP ILE LEU ASP ILE THR ALA SEQRES 18 B 290 ASN PHE GLU GLU ILE GLY LYS THR PRO LYS LYS ASP VAL SEQRES 19 B 290 MET ALA GLU LYS MET THR TYR PRO HIS LEU LEU GLY LEU SEQRES 20 B 290 ASN GLU SER TYR GLN ILE LEU ASP GLU SER LEU ASP GLN SEQRES 21 B 290 ALA GLU ALA ILE LEU ARG LYS LEU SER ASP GLU ILE ALA SEQRES 22 B 290 PHE ALA PRO GLN LYS ILE LEU SER LEU ILE GLU ARG LEU SEQRES 23 B 290 ARG LEU ASP ALA HET IPE A 301 14 HET MG A 302 1 HET MG A 303 1 HET IPE B 301 14 HET IPE B 302 14 HET MG B 303 1 HET MG B 304 1 HET MG B 305 1 HETNAM IPE 3-METHYLBUT-3-ENYL TRIHYDROGEN DIPHOSPHATE HETNAM MG MAGNESIUM ION HETSYN IPE ISOPENTENYL PYROPHOSPHATE FORMUL 3 IPE 3(C5 H12 O7 P2) FORMUL 4 MG 5(MG 2+) FORMUL 11 HOH *226(H2 O) HELIX 1 1 ASP A 2 GLU A 17 1 16 HELIX 2 2 SER A 22 ASN A 34 1 13 HELIX 3 3 ARG A 39 LEU A 52 1 14 HELIX 4 4 THR A 57 LEU A 80 1 24 HELIX 5 5 THR A 94 PHE A 99 1 6 HELIX 6 6 ASP A 100 GLU A 121 1 22 HELIX 7 7 PRO A 125 GLY A 141 1 17 HELIX 8 8 GLY A 144 ALA A 155 1 12 HELIX 9 9 GLU A 156 LYS A 158 5 3 HELIX 10 10 ASN A 161 THR A 173 1 13 HELIX 11 11 THR A 173 ALA A 188 1 16 HELIX 12 12 ASP A 191 ASP A 217 1 27 HELIX 13 13 THR A 239 GLY A 245 1 7 HELIX 14 14 GLY A 245 ASP A 269 1 25 HELIX 15 15 PRO A 275 ARG A 284 1 10 HELIX 16 16 LYS B 3 GLU B 17 1 15 HELIX 17 17 SER B 22 ALA B 35 1 14 HELIX 18 18 ARG B 39 LEU B 52 1 14 HELIX 19 19 THR B 57 ASP B 79 1 23 HELIX 20 20 THR B 94 PHE B 99 1 6 HELIX 21 21 ASP B 100 GLU B 121 1 22 HELIX 22 22 PRO B 125 GLY B 141 1 17 HELIX 23 23 GLY B 144 ALA B 155 1 12 HELIX 24 24 ASN B 161 THR B 173 1 13 HELIX 25 25 THR B 173 ALA B 188 1 16 HELIX 26 26 ASP B 191 ALA B 220 1 30 HELIX 27 27 ASN B 221 GLY B 226 1 6 HELIX 28 28 LYS B 230 ALA B 235 1 6 HELIX 29 29 THR B 239 GLY B 245 1 7 HELIX 30 30 GLY B 245 SER B 268 1 24 HELIX 31 31 PRO B 275 ARG B 284 1 10 SHEET 1 A 2 TYR B 88 ARG B 89 0 SHEET 2 A 2 GLN B 92 LEU B 93 -1 O GLN B 92 N ARG B 89 LINK OD1 ASP A 78 MG MG A 302 1555 1555 2.08 LINK OD2 ASP A 78 MG MG A 303 1555 1555 2.06 LINK OD2 ASP A 84 MG MG A 302 1555 1555 2.08 LINK OD2 ASP A 84 MG MG A 303 1555 1555 2.06 LINK O1A IPE A 301 MG MG A 302 1555 1555 2.08 LINK O2B IPE A 301 MG MG A 303 1555 1555 2.05 LINK O1A IPE A 301 MG MG A 303 1555 1555 2.07 LINK MG MG A 302 O HOH A 436 1555 1555 2.13 LINK MG MG A 302 O HOH A 454 1555 1555 2.10 LINK MG MG A 302 O HOH A 471 1555 1555 2.18 LINK MG MG A 303 O HOH A 419 1555 1555 2.19 LINK MG MG A 303 O HOH A 452 1555 1555 2.22 LINK OD1 ASP B 78 MG MG B 304 1555 1555 2.08 LINK OD2 ASP B 78 MG MG B 305 1555 1555 2.07 LINK OD2 ASP B 84 MG MG B 304 1555 1555 2.07 LINK OD2 ASP B 84 MG MG B 305 1555 1555 2.08 LINK OD2 ASP B 213 MG MG B 303 1555 1555 2.06 LINK O2B IPE B 301 MG MG B 303 1555 1555 2.07 LINK O2A IPE B 301 MG MG B 303 1555 1555 2.09 LINK O1A IPE B 301 MG MG B 304 1555 1555 2.08 LINK O3B IPE B 301 MG MG B 305 1555 1555 2.08 LINK O1A IPE B 301 MG MG B 305 1555 1555 2.08 LINK MG MG B 303 O HOH B 416 1555 1555 2.21 LINK MG MG B 303 O HOH B 420 1555 1555 2.28 LINK MG MG B 303 O HOH B 436 1555 1555 2.13 LINK MG MG B 304 O HOH B 419 1555 1555 2.13 LINK MG MG B 304 O HOH B 458 1555 1555 2.13 LINK MG MG B 304 O HOH B 496 1555 1555 2.14 LINK MG MG B 305 O HOH B 431 1555 1555 2.02 LINK MG MG B 305 O HOH B 474 1555 1555 2.09 SITE 1 AC1 16 SER A 74 LEU A 75 ASP A 78 ASP A 84 SITE 2 AC1 16 ARG A 89 LYS A 172 MG A 302 MG A 303 SITE 3 AC1 16 HOH A 403 HOH A 415 HOH A 417 HOH A 419 SITE 4 AC1 16 HOH A 452 HOH A 454 HOH A 467 HOH A 489 SITE 1 AC2 7 ASP A 78 ASP A 84 IPE A 301 MG A 303 SITE 2 AC2 7 HOH A 436 HOH A 454 HOH A 471 SITE 1 AC3 6 ASP A 78 ASP A 84 IPE A 301 MG A 302 SITE 2 AC3 6 HOH A 419 HOH A 452 SITE 1 AC4 19 ASP B 78 ASP B 84 ARG B 89 LYS B 172 SITE 2 AC4 19 THR B 173 GLN B 210 ASP B 213 LYS B 227 SITE 3 AC4 19 IPE B 302 MG B 303 MG B 304 MG B 305 SITE 4 AC4 19 HOH B 409 HOH B 420 HOH B 431 HOH B 436 SITE 5 AC4 19 HOH B 474 HOH B 484 HOH B 496 SITE 1 AC5 17 GLY B 37 LYS B 38 ARG B 41 HIS B 71 SITE 2 AC5 17 LEU B 75 ARG B 90 THR B 173 PHE B 209 SITE 3 AC5 17 GLN B 210 ASP B 213 IPE B 301 HOH B 402 SITE 4 AC5 17 HOH B 404 HOH B 406 HOH B 423 HOH B 430 SITE 5 AC5 17 HOH B 518 SITE 1 AC6 5 ASP B 213 IPE B 301 HOH B 416 HOH B 420 SITE 2 AC6 5 HOH B 436 SITE 1 AC7 7 ASP B 78 ASP B 84 IPE B 301 MG B 305 SITE 2 AC7 7 HOH B 419 HOH B 458 HOH B 496 SITE 1 AC8 6 ASP B 78 ASP B 84 IPE B 301 MG B 304 SITE 2 AC8 6 HOH B 431 HOH B 474 CRYST1 70.798 75.789 124.620 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014125 0.000000 0.000000 0.00000 SCALE2 0.000000 0.013195 0.000000 0.00000 SCALE3 0.000000 0.000000 0.008024 0.00000 MTRIX1 1 1.000000 0.000000 0.000000 0.00000 1 MTRIX2 1 0.000000 1.000000 0.000000 0.00000 1 MTRIX3 1 0.000000 0.000000 1.000000 0.00000 1 MTRIX1 2 -0.808870 -0.286453 -0.513492 118.98421 1 MTRIX2 2 -0.296929 -0.554771 0.777215 114.34899 1 MTRIX3 2 -0.507506 0.781136 0.363681 -20.95011 1