HEADER LIGASE 27-JUN-13 4LGC TITLE CRYSTAL STRUCTURE OF A BILE ACID-COENZYME A LIGASE (BAIB) FROM TITLE 2 CLOSTRIDIUM SCINDENS (VPI 12708) AT 2.19 A RESOLUTION COMPND MOL_ID: 1; COMPND 2 MOLECULE: BILE ACID-COENZYME A LIGASE; COMPND 3 CHAIN: A; COMPND 4 EC: 6.-.-.-; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: CLOSTRIDIUM SCINDENS; SOURCE 3 ORGANISM_TAXID: 29347; SOURCE 4 STRAIN: VPI 12708; SOURCE 5 GENE: BA20564A, BAIB; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: HK100; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: SPEEDET KEYWDS ATP-DEPENDENT AMP-BINDING ENZYME FAMILY, LIPOPROTEIN, STRUCTURAL KEYWDS 2 GENOMICS, JOINT CENTER FOR STRUCTURAL GENOMICS, JCSG, PROTEIN KEYWDS 3 STRUCTURE INITIATIVE, PSI-BIOLOGY, LIGASE EXPDTA X-RAY DIFFRACTION AUTHOR JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) REVDAT 2 15-NOV-17 4LGC 1 REMARK REVDAT 1 13-NOV-13 4LGC 0 JRNL AUTH JOINT CENTER FOR STRUCTURAL GENOMICS (JCSG) JRNL TITL CRYSTAL STRUCTURE OF A BILE ACID-COENZYME A LIGASE (BAIB) JRNL TITL 2 FROM CLOSTRIDIUM SCINDENS (VPI 12708) AT 2.19 A RESOLUTION JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.19 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.7.0032 REMARK 3 AUTHORS : MURSHUDOV,VAGIN,DODSON REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD WITH PHASES REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.19 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 45.88 REMARK 3 DATA CUTOFF (SIGMA(F)) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 3 NUMBER OF REFLECTIONS : 28254 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.191 REMARK 3 R VALUE (WORKING SET) : 0.189 REMARK 3 FREE R VALUE : 0.228 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1430 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 2.19 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 2.25 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1774 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.20 REMARK 3 BIN R VALUE (WORKING SET) : 0.3190 REMARK 3 BIN FREE R VALUE SET COUNT : 101 REMARK 3 BIN FREE R VALUE : 0.3620 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 3069 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 0 REMARK 3 SOLVENT ATOMS : 73 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 43.30 REMARK 3 MEAN B VALUE (OVERALL, A**2) : 47.81 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 2.85000 REMARK 3 B22 (A**2) : -0.77000 REMARK 3 B33 (A**2) : -2.08000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.199 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.175 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.125 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 10.562 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.959 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.942 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 3159 ; 0.014 ; 0.019 REMARK 3 BOND LENGTHS OTHERS (A): 2961 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 4281 ; 1.611 ; 1.978 REMARK 3 BOND ANGLES OTHERS (DEGREES): 6848 ; 0.809 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 396 ; 6.092 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 135 ;37.782 ;24.444 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 491 ;14.215 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 13 ;14.764 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 464 ; 0.088 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3555 ; 0.007 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 706 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 1575 ; 2.665 ; 3.761 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1574 ; 2.663 ; 3.758 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 1965 ; 3.863 ; 5.627 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 16 A 415 REMARK 3 ORIGIN FOR THE GROUP (A): 15.8665 -4.3919 -3.5469 REMARK 3 T TENSOR REMARK 3 T11: 0.0187 T22: 0.0069 REMARK 3 T33: 0.0231 T12: 0.0016 REMARK 3 T13: -0.0069 T23: 0.0022 REMARK 3 L TENSOR REMARK 3 L11: 0.3521 L22: 0.9185 REMARK 3 L33: 1.3500 L12: 0.1094 REMARK 3 L13: -0.0818 L23: 0.1630 REMARK 3 S TENSOR REMARK 3 S11: -0.0127 S12: -0.0494 S13: -0.0152 REMARK 3 S21: -0.0643 S22: -0.0139 S23: 0.0481 REMARK 3 S31: -0.1431 S32: 0.0131 S33: 0.0266 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: 1. HYDROGENS HAVE BEEN ADDED IN THE REMARK 3 RIDING POSITIONS. 2. ATOM RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL B FACTORS. 3. ANISOU RECORD CONTAINS SUM OF TLS AND REMARK 3 RESIDUAL U FACTORS. 4. A MET-INHIBITION PROTOCOL WAS USED FOR REMARK 3 SELENOMETHIONINE INCORPORATION DURING PROTEIN EXPRESSION. THE REMARK 3 OCCUPANCY OF THE SE ATOMS IN THE MSE RESIDUES WAS REDUCED TO REMARK 3 0.75 FOR THE REDUCED SCATTERING POWER DUE TO PARTIAL S-MET REMARK 3 INCORPORATION. 5. THE C-TERMINAL DOMAIN (416-520) IS LIKELY REMARK 3 DISORDERED IN THE CRYSTAL. REMARK 4 REMARK 4 4LGC COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080594. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 14-JAN-12 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRL REMARK 200 BEAMLINE : BL14-1 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97934 REMARK 200 MONOCHROMATOR : DOUBLE CRYSTAL SI(111) REMARK 200 OPTICS : VERTICAL FOCUSING MIRROR; DOUBLE REMARK 200 CRYSTAL SI(111) MONOCHROMATOR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 325 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : XSCALE DECEMBER 29, 2011 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 28363 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.190 REMARK 200 RESOLUTION RANGE LOW (A) : 45.880 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -3.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 6.000 REMARK 200 R MERGE (I) : 0.11300 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 10.1100 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.19 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.27 REMARK 200 COMPLETENESS FOR SHELL (%) : 90.8 REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : 0.95300 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 1.900 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELX, SHARP, SHELXD REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 46.13 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.28 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 20.00% ETHANOL, 0.1M TRIS PH 8.5, REMARK 280 ADDITIVE - 0.001 M CHOLIC ACID, NANODROP, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 32.90950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 47.66900 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.16000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 47.66900 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 32.90950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.16000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MSE A -18 REMARK 465 GLY A -17 REMARK 465 SER A -16 REMARK 465 ASP A -15 REMARK 465 LYS A -14 REMARK 465 ILE A -13 REMARK 465 HIS A -12 REMARK 465 HIS A -11 REMARK 465 HIS A -10 REMARK 465 HIS A -9 REMARK 465 HIS A -8 REMARK 465 HIS A -7 REMARK 465 GLU A -6 REMARK 465 ASN A -5 REMARK 465 LEU A -4 REMARK 465 TYR A -3 REMARK 465 PHE A -2 REMARK 465 GLN A -1 REMARK 465 GLY A 0 REMARK 465 MSE A 1 REMARK 465 HIS A 2 REMARK 465 LYS A 3 REMARK 465 LYS A 4 REMARK 465 SER A 5 REMARK 465 ALA A 6 REMARK 465 CYS A 7 REMARK 465 GLU A 8 REMARK 465 ARG A 9 REMARK 465 GLU A 10 REMARK 465 GLY A 11 REMARK 465 LYS A 12 REMARK 465 GLU A 13 REMARK 465 LEU A 14 REMARK 465 LYS A 15 REMARK 465 LYS A 54 REMARK 465 GLU A 55 REMARK 465 GLY A 180 REMARK 465 GLY A 181 REMARK 465 THR A 182 REMARK 465 SER A 183 REMARK 465 GLY A 184 REMARK 465 ARG A 416 REMARK 465 ARG A 417 REMARK 465 SER A 418 REMARK 465 ASP A 419 REMARK 465 MSE A 420 REMARK 465 LEU A 421 REMARK 465 VAL A 422 REMARK 465 SER A 423 REMARK 465 GLY A 424 REMARK 465 GLY A 425 REMARK 465 GLU A 426 REMARK 465 ASN A 427 REMARK 465 VAL A 428 REMARK 465 PHE A 429 REMARK 465 ALA A 430 REMARK 465 THR A 431 REMARK 465 GLU A 432 REMARK 465 VAL A 433 REMARK 465 GLU A 434 REMARK 465 THR A 435 REMARK 465 ALA A 436 REMARK 465 LEU A 437 REMARK 465 LEU A 438 REMARK 465 ARG A 439 REMARK 465 TYR A 440 REMARK 465 LYS A 441 REMARK 465 ASP A 442 REMARK 465 ILE A 443 REMARK 465 LEU A 444 REMARK 465 ASP A 445 REMARK 465 ALA A 446 REMARK 465 VAL A 447 REMARK 465 VAL A 448 REMARK 465 VAL A 449 REMARK 465 GLY A 450 REMARK 465 ILE A 451 REMARK 465 PRO A 452 REMARK 465 ASP A 453 REMARK 465 GLU A 454 REMARK 465 ASP A 455 REMARK 465 LEU A 456 REMARK 465 GLY A 457 REMARK 465 ARG A 458 REMARK 465 ARG A 459 REMARK 465 LEU A 460 REMARK 465 HIS A 461 REMARK 465 ALA A 462 REMARK 465 VAL A 463 REMARK 465 ILE A 464 REMARK 465 GLU A 465 REMARK 465 THR A 466 REMARK 465 GLY A 467 REMARK 465 LYS A 468 REMARK 465 GLU A 469 REMARK 465 ILE A 470 REMARK 465 PRO A 471 REMARK 465 ALA A 472 REMARK 465 GLU A 473 REMARK 465 GLU A 474 REMARK 465 LEU A 475 REMARK 465 LYS A 476 REMARK 465 THR A 477 REMARK 465 PHE A 478 REMARK 465 LEU A 479 REMARK 465 ARG A 480 REMARK 465 LYS A 481 REMARK 465 TYR A 482 REMARK 465 LEU A 483 REMARK 465 THR A 484 REMARK 465 PRO A 485 REMARK 465 TYR A 486 REMARK 465 LYS A 487 REMARK 465 ILE A 488 REMARK 465 PRO A 489 REMARK 465 LYS A 490 REMARK 465 THR A 491 REMARK 465 PHE A 492 REMARK 465 GLU A 493 REMARK 465 PHE A 494 REMARK 465 VAL A 495 REMARK 465 ARG A 496 REMARK 465 SER A 497 REMARK 465 ILE A 498 REMARK 465 ARG A 499 REMARK 465 ARG A 500 REMARK 465 GLY A 501 REMARK 465 ASP A 502 REMARK 465 ASN A 503 REMARK 465 GLY A 504 REMARK 465 LYS A 505 REMARK 465 ALA A 506 REMARK 465 ASP A 507 REMARK 465 ARG A 508 REMARK 465 LYS A 509 REMARK 465 ARG A 510 REMARK 465 ILE A 511 REMARK 465 LEU A 512 REMARK 465 GLU A 513 REMARK 465 ASP A 514 REMARK 465 CYS A 515 REMARK 465 ILE A 516 REMARK 465 ALA A 517 REMARK 465 ARG A 518 REMARK 465 GLY A 519 REMARK 465 GLY A 520 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLN A 56 CG CD OE1 NE2 REMARK 470 ASN A 57 CG OD1 ND2 REMARK 470 LYS A 185 CG CD CE NZ REMARK 470 LYS A 283 CD CE NZ REMARK 470 ASP A 415 CG OD1 OD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 ASN A 23 96.75 -65.09 REMARK 500 LYS A 43 68.69 -150.63 REMARK 500 PRO A 93 -167.53 -69.85 REMARK 500 PHE A 365 -10.27 72.52 REMARK 500 REMARK 500 REMARK: NULL REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: JCSG-420768 RELATED DB: TARGETTRACK REMARK 999 REMARK 999 SEQUENCE REMARK 999 THIS CONSTRUCT (RESIDUES 1-520) WAS EXPRESSED WITH AN N-TERMINAL REMARK 999 PURIFICATION TAG MGSDKIHHHHHHENLYFQG. DBREF 4LGC A 1 520 UNP P19409 BAIB_EUBSP 1 520 SEQADV 4LGC MSE A -18 UNP P19409 EXPRESSION TAG SEQADV 4LGC GLY A -17 UNP P19409 EXPRESSION TAG SEQADV 4LGC SER A -16 UNP P19409 EXPRESSION TAG SEQADV 4LGC ASP A -15 UNP P19409 EXPRESSION TAG SEQADV 4LGC LYS A -14 UNP P19409 EXPRESSION TAG SEQADV 4LGC ILE A -13 UNP P19409 EXPRESSION TAG SEQADV 4LGC HIS A -12 UNP P19409 EXPRESSION TAG SEQADV 4LGC HIS A -11 UNP P19409 EXPRESSION TAG SEQADV 4LGC HIS A -10 UNP P19409 EXPRESSION TAG SEQADV 4LGC HIS A -9 UNP P19409 EXPRESSION TAG SEQADV 4LGC HIS A -8 UNP P19409 EXPRESSION TAG SEQADV 4LGC HIS A -7 UNP P19409 EXPRESSION TAG SEQADV 4LGC GLU A -6 UNP P19409 EXPRESSION TAG SEQADV 4LGC ASN A -5 UNP P19409 EXPRESSION TAG SEQADV 4LGC LEU A -4 UNP P19409 EXPRESSION TAG SEQADV 4LGC TYR A -3 UNP P19409 EXPRESSION TAG SEQADV 4LGC PHE A -2 UNP P19409 EXPRESSION TAG SEQADV 4LGC GLN A -1 UNP P19409 EXPRESSION TAG SEQADV 4LGC GLY A 0 UNP P19409 EXPRESSION TAG SEQRES 1 A 539 MSE GLY SER ASP LYS ILE HIS HIS HIS HIS HIS HIS GLU SEQRES 2 A 539 ASN LEU TYR PHE GLN GLY MSE HIS LYS LYS SER ALA CYS SEQRES 3 A 539 GLU ARG GLU GLY LYS GLU LEU LYS ARG ASP PHE PHE ASN SEQRES 4 A 539 LYS PHE ASN LEU GLY THR SER ASN PHE VAL THR PRO GLY SEQRES 5 A 539 LYS GLN LEU GLU TYR VAL SER GLU CYS LYS PRO ASP SER SEQRES 6 A 539 THR ALA VAL ILE CYS LEU ASP LYS GLU GLN ASN CYS SER SEQRES 7 A 539 VAL ILE THR TRP HIS GLN LEU HIS VAL TYR SER SER GLN SEQRES 8 A 539 LEU ALA TRP TYR LEU ILE GLU ASN GLU ILE GLY PRO GLY SEQRES 9 A 539 SER ILE VAL LEU THR MSE PHE PRO ASN SER ILE GLU HIS SEQRES 10 A 539 ILE ILE ALA VAL PHE ALA ILE TRP LYS ALA GLY ALA CYS SEQRES 11 A 539 TYR MSE PRO MSE SER TYR LYS ALA ALA GLU SER GLU ILE SEQRES 12 A 539 ARG GLU ALA CYS ASP THR ILE HIS PRO ASN ALA ALA PHE SEQRES 13 A 539 ALA GLU CYS LYS ILE PRO GLY LEU LYS PHE CYS LEU SER SEQRES 14 A 539 ALA ASP GLU ILE TYR GLU ALA MSE GLU GLY ARG SER LYS SEQRES 15 A 539 GLU MSE PRO SER ASP ARG LEU ALA ASN PRO ASN MSE ILE SEQRES 16 A 539 SER LEU SER GLY GLY THR SER GLY LYS MSE LYS PHE ILE SEQRES 17 A 539 ARG GLN ASN LEU PRO CYS GLY LEU ASP ASP GLU THR ILE SEQRES 18 A 539 ARG SER TRP SER LEU MSE SER GLY MSE GLY PHE GLU GLN SEQRES 19 A 539 ARG GLN LEU LEU VAL GLY PRO LEU PHE HIS GLY ALA PRO SEQRES 20 A 539 HIS SER ALA ALA PHE ASN GLY LEU PHE MSE GLY ASN THR SEQRES 21 A 539 LEU VAL LEU THR ARG ASN LEU CYS PRO GLY ASN ILE LEU SEQRES 22 A 539 ASN MSE ILE LYS LYS TYR LYS ILE GLU PHE ILE GLN MSE SEQRES 23 A 539 VAL PRO THR LEU MSE ASN ARG LEU ALA LYS LEU GLU GLY SEQRES 24 A 539 VAL GLY LYS GLU ASP PHE ALA SER LEU LYS ALA LEU CYS SEQRES 25 A 539 HIS THR GLY GLY VAL CYS SER PRO TRP LEU LYS GLN ILE SEQRES 26 A 539 TRP ILE ASP LEU LEU GLY PRO GLU LYS ILE TYR GLU MSE SEQRES 27 A 539 TYR SER MSE THR GLU CYS ILE GLY LEU THR CYS ILE ARG SEQRES 28 A 539 GLY ASP GLU TRP VAL LYS HIS PRO GLY SER ILE GLY ARG SEQRES 29 A 539 PRO VAL GLY ASP SER LYS VAL SER ILE ARG ASP GLU ASN SEQRES 30 A 539 GLY LYS GLU VAL ALA PRO PHE GLU ILE GLY GLU ILE TYR SEQRES 31 A 539 MSE THR ALA PRO ALA SER TYR LEU VAL THR GLU TYR ILE SEQRES 32 A 539 ASN TRP GLU PRO LEU GLU VAL LYS GLU GLY GLY PHE ARG SEQRES 33 A 539 SER VAL GLY ASP ILE GLY TYR VAL ASP GLU GLN GLY TYR SEQRES 34 A 539 LEU TYR PHE SER ASP ARG ARG SER ASP MSE LEU VAL SER SEQRES 35 A 539 GLY GLY GLU ASN VAL PHE ALA THR GLU VAL GLU THR ALA SEQRES 36 A 539 LEU LEU ARG TYR LYS ASP ILE LEU ASP ALA VAL VAL VAL SEQRES 37 A 539 GLY ILE PRO ASP GLU ASP LEU GLY ARG ARG LEU HIS ALA SEQRES 38 A 539 VAL ILE GLU THR GLY LYS GLU ILE PRO ALA GLU GLU LEU SEQRES 39 A 539 LYS THR PHE LEU ARG LYS TYR LEU THR PRO TYR LYS ILE SEQRES 40 A 539 PRO LYS THR PHE GLU PHE VAL ARG SER ILE ARG ARG GLY SEQRES 41 A 539 ASP ASN GLY LYS ALA ASP ARG LYS ARG ILE LEU GLU ASP SEQRES 42 A 539 CYS ILE ALA ARG GLY GLY MODRES 4LGC MSE A 91 MET SELENOMETHIONINE MODRES 4LGC MSE A 113 MET SELENOMETHIONINE MODRES 4LGC MSE A 115 MET SELENOMETHIONINE MODRES 4LGC MSE A 158 MET SELENOMETHIONINE MODRES 4LGC MSE A 165 MET SELENOMETHIONINE MODRES 4LGC MSE A 175 MET SELENOMETHIONINE MODRES 4LGC MSE A 186 MET SELENOMETHIONINE MODRES 4LGC MSE A 208 MET SELENOMETHIONINE MODRES 4LGC MSE A 211 MET SELENOMETHIONINE MODRES 4LGC MSE A 238 MET SELENOMETHIONINE MODRES 4LGC MSE A 256 MET SELENOMETHIONINE MODRES 4LGC MSE A 267 MET SELENOMETHIONINE MODRES 4LGC MSE A 272 MET SELENOMETHIONINE MODRES 4LGC MSE A 319 MET SELENOMETHIONINE MODRES 4LGC MSE A 322 MET SELENOMETHIONINE MODRES 4LGC MSE A 372 MET SELENOMETHIONINE HET MSE A 91 8 HET MSE A 113 8 HET MSE A 115 8 HET MSE A 158 8 HET MSE A 165 8 HET MSE A 175 8 HET MSE A 186 8 HET MSE A 208 8 HET MSE A 211 8 HET MSE A 238 8 HET MSE A 256 8 HET MSE A 267 8 HET MSE A 272 8 HET MSE A 319 8 HET MSE A 322 8 HET MSE A 372 8 HETNAM MSE SELENOMETHIONINE FORMUL 1 MSE 16(C5 H11 N O2 SE) FORMUL 2 HOH *73(H2 O) HELIX 1 1 THR A 31 LYS A 43 1 13 HELIX 2 2 TRP A 63 ASN A 80 1 18 HELIX 3 3 SER A 95 ALA A 108 1 14 HELIX 4 4 ALA A 120 HIS A 132 1 13 HELIX 5 5 ASP A 152 GLU A 159 1 8 HELIX 6 6 ASP A 198 GLY A 210 1 13 HELIX 7 7 HIS A 225 MSE A 238 1 14 HELIX 8 8 CYS A 249 TYR A 260 1 12 HELIX 9 9 VAL A 268 LEU A 278 1 11 HELIX 10 10 GLY A 282 ALA A 287 5 6 HELIX 11 11 SER A 300 GLY A 312 1 13 HELIX 12 12 THR A 323 ILE A 326 5 4 HELIX 13 13 GLY A 333 HIS A 339 1 7 HELIX 14 14 PRO A 375 VAL A 380 1 6 SHEET 1 A 9 CYS A 58 THR A 62 0 SHEET 2 A 9 THR A 47 LEU A 52 -1 N CYS A 51 O SER A 59 SHEET 3 A 9 LEU A 242 THR A 245 1 O LEU A 244 N ILE A 50 SHEET 4 A 9 GLN A 217 LEU A 219 1 N GLN A 217 O VAL A 243 SHEET 5 A 9 PHE A 264 MSE A 267 1 O PHE A 264 N LEU A 218 SHEET 6 A 9 ALA A 291 HIS A 294 1 O CYS A 293 N MSE A 267 SHEET 7 A 9 ILE A 316 SER A 321 1 O TYR A 317 N LEU A 292 SHEET 8 A 9 LEU A 328 ARG A 332 -1 O THR A 329 N TYR A 320 SHEET 9 A 9 ARG A 345 PRO A 346 -1 O ARG A 345 N CYS A 330 SHEET 1 B 4 CYS A 111 PRO A 114 0 SHEET 2 B 4 ILE A 87 THR A 90 1 N VAL A 88 O CYS A 111 SHEET 3 B 4 ALA A 135 PHE A 137 1 O PHE A 137 N LEU A 89 SHEET 4 B 4 CYS A 148 LEU A 149 1 O LEU A 149 N ALA A 136 SHEET 1 C 3 SER A 177 SER A 179 0 SHEET 2 C 3 LYS A 187 GLN A 191 -1 O ILE A 189 N SER A 177 SHEET 3 C 3 THR A 381 TYR A 383 -1 O GLU A 382 N ARG A 190 SHEET 1 D 4 VAL A 352 ARG A 355 0 SHEET 2 D 4 GLY A 368 MSE A 372 -1 O GLU A 369 N ARG A 355 SHEET 3 D 4 ILE A 402 VAL A 405 -1 O GLY A 403 N GLY A 368 SHEET 4 D 4 LEU A 411 PHE A 413 -1 O TYR A 412 N TYR A 404 LINK C THR A 90 N MSE A 91 1555 1555 1.33 LINK C MSE A 91 N PHE A 92 1555 1555 1.31 LINK C TYR A 112 N MSE A 113 1555 1555 1.33 LINK C MSE A 113 N PRO A 114 1555 1555 1.32 LINK C PRO A 114 N MSE A 115 1555 1555 1.33 LINK C MSE A 115 N SER A 116 1555 1555 1.33 LINK C ALA A 157 N MSE A 158 1555 1555 1.33 LINK C MSE A 158 N GLU A 159 1555 1555 1.32 LINK C GLU A 164 N MSE A 165 1555 1555 1.33 LINK C MSE A 165 N PRO A 166 1555 1555 1.34 LINK C ASN A 174 N MSE A 175 1555 1555 1.33 LINK C MSE A 175 N ILE A 176 1555 1555 1.32 LINK C LYS A 185 N MSE A 186 1555 1555 1.34 LINK C MSE A 186 N LYS A 187 1555 1555 1.33 LINK C LEU A 207 N MSE A 208 1555 1555 1.33 LINK C MSE A 208 N SER A 209 1555 1555 1.33 LINK C GLY A 210 N MSE A 211 1555 1555 1.32 LINK C MSE A 211 N GLY A 212 1555 1555 1.32 LINK C PHE A 237 N MSE A 238 1555 1555 1.32 LINK C MSE A 238 N GLY A 239 1555 1555 1.33 LINK C ASN A 255 N MSE A 256 1555 1555 1.35 LINK C MSE A 256 N ILE A 257 1555 1555 1.33 LINK C GLN A 266 N MSE A 267 1555 1555 1.31 LINK C MSE A 267 N VAL A 268 1555 1555 1.33 LINK C LEU A 271 N MSE A 272 1555 1555 1.33 LINK C MSE A 272 N ASN A 273 1555 1555 1.31 LINK C GLU A 318 N MSE A 319 1555 1555 1.33 LINK C MSE A 319 N TYR A 320 1555 1555 1.30 LINK C SER A 321 N MSE A 322 1555 1555 1.34 LINK C MSE A 322 N THR A 323 1555 1555 1.32 LINK C TYR A 371 N MSE A 372 1555 1555 1.32 LINK C MSE A 372 N THR A 373 1555 1555 1.33 CISPEP 1 ASN A 172 PRO A 173 0 6.70 CRYST1 65.819 86.320 95.338 90.00 90.00 90.00 P 21 21 21 4 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.015193 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011585 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010489 0.00000