HEADER LIGASE/LIGASE INHIBITOR 30-JUN-13 4LH6 TITLE CRYSTAL STRUCTURE OF A LIGA INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADENYLATION DOMAIN, UNP RESIDUES 1-323; COMPND 5 SYNONYM: POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD(+)]; COMPND 6 EC: 6.5.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: ATCC 700802 / V583; SOURCE 5 GENE: LIGA, EF_0722; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PROTEIN-INHIBITOR COMPLEX, LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR K.BENENATO,H.WANG,H.M.MCGUIRE,H.DAVIS,N.GAO,D.B.PRINCE,H.JAHIC, AUTHOR 2 S.S.STOKES,P.A.BORIACK-SJODIN REVDAT 3 28-FEB-24 4LH6 1 REMARK LINK REVDAT 2 08-JAN-14 4LH6 1 JRNL REVDAT 1 25-DEC-13 4LH6 0 JRNL AUTH K.MURPHY-BENENATO,H.WANG,H.M.MCGUIRE,H.E.DAVIS,N.GAO, JRNL AUTH 2 D.B.PRINCE,H.JAHIC,S.S.STOKES,P.A.BORIACK-SJODIN JRNL TITL IDENTIFICATION THROUGH STRUCTURE-BASED METHODS OF A JRNL TITL 2 BACTERIAL NAD(+)-DEPENDENT DNA LIGASE INHIBITOR THAT AVOIDS JRNL TITL 3 KNOWN RESISTANCE MUTATIONS. JRNL REF BIOORG.MED.CHEM.LETT. V. 24 360 2014 JRNL REFN ISSN 0960-894X JRNL PMID 24287382 JRNL DOI 10.1016/J.BMCL.2013.11.007 REMARK 2 REMARK 2 RESOLUTION. 1.65 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.65 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 52.19 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 98.8 REMARK 3 NUMBER OF REFLECTIONS : 39958 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.221 REMARK 3 R VALUE (WORKING SET) : 0.219 REMARK 3 FREE R VALUE : 0.248 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 2119 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.65 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.69 REMARK 3 REFLECTION IN BIN (WORKING SET) : 2605 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 92.46 REMARK 3 BIN R VALUE (WORKING SET) : 0.3070 REMARK 3 BIN FREE R VALUE SET COUNT : 143 REMARK 3 BIN FREE R VALUE : 0.3280 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2586 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 42 REMARK 3 SOLVENT ATOMS : 260 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 30.53 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.07000 REMARK 3 B22 (A**2) : -0.78000 REMARK 3 B33 (A**2) : 0.86000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.121 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.114 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.082 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 2.403 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.948 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.936 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2792 ; 0.005 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1903 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3802 ; 0.958 ; 1.982 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4634 ; 0.748 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 343 ; 4.969 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 145 ;32.885 ;24.483 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 478 ;12.677 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;14.379 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 404 ; 0.057 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3186 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 570 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 3 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 501 A 760 REMARK 3 RESIDUE RANGE : A 401 A 405 REMARK 3 RESIDUE RANGE : A 2 A 323 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5660 38.6870 17.3500 REMARK 3 T TENSOR REMARK 3 T11: 0.0153 T22: 0.0130 REMARK 3 T33: 0.0097 T12: 0.0024 REMARK 3 T13: 0.0109 T23: 0.0034 REMARK 3 L TENSOR REMARK 3 L11: 0.2113 L22: 0.1517 REMARK 3 L33: 0.1444 L12: -0.1269 REMARK 3 L13: 0.0778 L23: 0.0240 REMARK 3 S TENSOR REMARK 3 S11: -0.0238 S12: -0.0156 S13: -0.0333 REMARK 3 S21: 0.0116 S22: 0.0198 S23: 0.0237 REMARK 3 S31: 0.0101 S32: -0.0057 S33: 0.0041 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LH6 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080624. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 21-AUG-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 42107 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.650 REMARK 200 RESOLUTION RANGE LOW (A) : 52.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 98.9 REMARK 200 DATA REDUNDANCY : 4.620 REMARK 200 R MERGE (I) : 0.05800 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 11.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.65 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.71 REMARK 200 COMPLETENESS FOR SHELL (%) : 94.0 REMARK 200 DATA REDUNDANCY IN SHELL : 3.31 REMARK 200 R MERGE FOR SHELL (I) : 0.43600 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 2.200 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.07 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26-32% PEG4000, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M SODIUM ACETATE PH 5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.35450 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.35450 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.47750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.18850 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.47750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.18850 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.35450 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.47750 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.18850 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.35450 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.47750 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.18850 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 GLU A 322 56.73 -118.94 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 218 O REMARK 620 2 ARG A 220 O 93.8 REMARK 620 3 HOH A 519 O 161.4 79.2 REMARK 620 4 HOH A 556 O 99.5 86.0 63.0 REMARK 620 5 HOH A 583 O 85.1 175.3 100.6 89.8 REMARK 620 6 HOH A 755 O 108.1 89.6 89.2 152.3 95.1 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 405 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 276 O REMARK 620 2 SER A 279 OG 107.3 REMARK 620 3 HOH A 503 O 73.8 82.6 REMARK 620 4 HOH A 515 O 163.1 79.3 92.0 REMARK 620 5 HOH A 590 O 97.6 152.7 93.9 73.7 REMARK 620 6 HOH A 593 O 84.0 90.8 153.7 111.8 103.1 REMARK 620 N 1 2 3 4 5 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1X7 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NMN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ACT A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 405 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LH7 RELATED DB: PDB DBREF 4LH6 A 1 323 UNP Q837V6 DNLJ_ENTFA 1 323 SEQRES 1 A 323 MET GLU GLN GLN PRO LEU THR LEU THR ALA ALA THR THR SEQRES 2 A 323 ARG ALA GLN GLU LEU ARG LYS GLN LEU ASN GLN TYR SER SEQRES 3 A 323 HIS GLU TYR TYR VAL LYS ASP GLN PRO SER VAL GLU ASP SEQRES 4 A 323 TYR VAL TYR ASP ARG LEU TYR LYS GLU LEU VAL ASP ILE SEQRES 5 A 323 GLU THR GLU PHE PRO ASP LEU ILE THR PRO ASP SER PRO SEQRES 6 A 323 THR GLN ARG VAL GLY GLY LYS VAL LEU SER GLY PHE GLU SEQRES 7 A 323 LYS ALA PRO HIS ASP ILE PRO MET TYR SER LEU ASN ASP SEQRES 8 A 323 GLY PHE SER LYS GLU ASP ILE PHE ALA PHE ASP GLU ARG SEQRES 9 A 323 VAL ARG LYS ALA ILE GLY LYS PRO VAL ALA TYR CYS CYS SEQRES 10 A 323 GLU LEU LYS ILE ASP GLY LEU ALA ILE SER LEU ARG TYR SEQRES 11 A 323 GLU ASN GLY VAL PHE VAL ARG GLY ALA THR ARG GLY ASP SEQRES 12 A 323 GLY THR VAL GLY GLU ASN ILE THR GLU ASN LEU ARG THR SEQRES 13 A 323 VAL ARG SER VAL PRO MET ARG LEU THR GLU PRO ILE SER SEQRES 14 A 323 VAL GLU VAL ARG GLY GLU CYS TYR MET PRO LYS GLN SER SEQRES 15 A 323 PHE VAL ALA LEU ASN GLU GLU ARG GLU GLU ASN GLY GLN SEQRES 16 A 323 ASP ILE PHE ALA ASN PRO ARG ASN ALA ALA ALA GLY SER SEQRES 17 A 323 LEU ARG GLN LEU ASP THR LYS ILE VAL ALA LYS ARG ASN SEQRES 18 A 323 LEU ASN THR PHE LEU TYR THR VAL ALA ASP PHE GLY PRO SEQRES 19 A 323 MET LYS ALA LYS THR GLN PHE GLU ALA LEU GLU GLU LEU SEQRES 20 A 323 SER ALA ILE GLY PHE ARG THR ASN PRO GLU ARG GLN LEU SEQRES 21 A 323 CYS GLN SER ILE ASP GLU VAL TRP ALA TYR ILE GLU GLU SEQRES 22 A 323 TYR HIS GLU LYS ARG SER THR LEU PRO TYR GLU ILE ASP SEQRES 23 A 323 GLY ILE VAL ILE LYS VAL ASN GLU PHE ALA LEU GLN ASP SEQRES 24 A 323 GLU LEU GLY PHE THR VAL LYS ALA PRO ARG TRP ALA ILE SEQRES 25 A 323 ALA TYR LYS PHE PRO PRO GLU GLU ALA GLU THR HET 1X7 A 401 14 HET NMN A 402 22 HET ACT A 403 4 HET NA A 404 1 HET NA A 405 1 HETNAM 1X7 4-AMINO-2-BROMOTHIENO[3,2-C]PYRIDINE-7-CARBOXAMIDE HETNAM NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE HETNAM ACT ACETATE ION HETNAM NA SODIUM ION HETSYN NMN NICOTINAMIDE MONONUCLEOTIDE FORMUL 2 1X7 C8 H6 BR N3 O S FORMUL 3 NMN C11 H16 N2 O8 P 1+ FORMUL 4 ACT C2 H3 O2 1- FORMUL 5 NA 2(NA 1+) FORMUL 7 HOH *260(H2 O) HELIX 1 1 THR A 7 VAL A 31 1 25 HELIX 2 2 GLU A 38 PHE A 56 1 19 HELIX 3 3 PRO A 57 ILE A 60 5 4 HELIX 4 4 SER A 64 ARG A 68 5 5 HELIX 5 5 SER A 94 GLY A 110 1 17 HELIX 6 6 ILE A 150 THR A 156 1 7 HELIX 7 7 PRO A 179 ASN A 193 1 15 HELIX 8 8 ASN A 200 ARG A 210 1 11 HELIX 9 9 ASP A 213 ARG A 220 1 8 HELIX 10 10 THR A 239 GLY A 251 1 13 HELIX 11 11 SER A 263 ARG A 278 1 16 HELIX 12 12 SER A 279 LEU A 281 5 3 HELIX 13 13 GLU A 294 GLY A 302 1 9 HELIX 14 14 PRO A 318 GLU A 322 5 5 SHEET 1 A 2 LYS A 79 PRO A 81 0 SHEET 2 A 2 VAL A 146 GLU A 148 -1 O GLY A 147 N ALA A 80 SHEET 1 B 5 ASP A 91 GLY A 92 0 SHEET 2 B 5 ALA A 311 LYS A 315 1 O ALA A 313 N GLY A 92 SHEET 3 B 5 ILE A 285 VAL A 292 -1 N ILE A 288 O TYR A 314 SHEET 4 B 5 TYR A 115 ILE A 121 -1 N GLU A 118 O VAL A 289 SHEET 5 B 5 GLN A 259 CYS A 261 -1 O CYS A 261 N TYR A 115 SHEET 1 C 4 VAL A 134 THR A 140 0 SHEET 2 C 4 LEU A 124 GLU A 131 -1 N ARG A 129 O ARG A 137 SHEET 3 C 4 VAL A 170 TYR A 177 -1 O VAL A 172 N LEU A 128 SHEET 4 C 4 ASN A 223 VAL A 229 -1 O THR A 228 N ARG A 173 LINK O ALA A 218 NA NA A 404 1555 1555 2.52 LINK O ARG A 220 NA NA A 404 1555 1555 2.25 LINK O GLU A 276 NA NA A 405 1555 1555 2.46 LINK OG SER A 279 NA NA A 405 1555 1555 2.41 LINK NA NA A 404 O HOH A 519 1555 1555 2.40 LINK NA NA A 404 O HOH A 556 1555 1555 2.83 LINK NA NA A 404 O HOH A 583 1555 1555 2.15 LINK NA NA A 404 O HOH A 755 1555 1555 2.40 LINK NA NA A 405 O HOH A 503 1555 1555 2.52 LINK NA NA A 405 O HOH A 515 1555 1555 2.51 LINK NA NA A 405 O HOH A 590 1555 1555 2.32 LINK NA NA A 405 O HOH A 593 1555 1555 2.27 SITE 1 AC1 10 TYR A 87 GLU A 118 LEU A 119 LYS A 120 SITE 2 AC1 10 ILE A 121 GLU A 175 TYR A 227 VAL A 289 SITE 3 AC1 10 LYS A 291 HOH A 570 SITE 1 AC2 14 TYR A 25 SER A 26 TYR A 29 TYR A 30 SITE 2 AC2 14 VAL A 37 ASP A 39 TYR A 42 ASP A 43 SITE 3 AC2 14 ARG A 158 HOH A 520 HOH A 528 HOH A 571 SITE 4 AC2 14 HOH A 645 HOH A 694 SITE 1 AC3 5 TRP A 268 HIS A 275 TYR A 314 HOH A 716 SITE 2 AC3 5 HOH A 739 SITE 1 AC4 6 ALA A 218 ARG A 220 HOH A 519 HOH A 556 SITE 2 AC4 6 HOH A 583 HOH A 755 SITE 1 AC5 6 GLU A 276 SER A 279 HOH A 503 HOH A 515 SITE 2 AC5 6 HOH A 590 HOH A 593 CRYST1 48.955 104.377 136.709 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020427 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009581 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007315 0.00000