HEADER LIGASE/LIGASE INHIBITOR 30-JUN-13 4LH7 TITLE CRYSTAL STRUCTURE OF A LIGA INHIBITOR COMPND MOL_ID: 1; COMPND 2 MOLECULE: DNA LIGASE; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: ADENYLATION DOMAIN, UNP RESIDUES 1-323; COMPND 5 SYNONYM: POLYDEOXYRIBONUCLEOTIDE SYNTHASE [NAD(+)]; COMPND 6 EC: 6.5.1.2; COMPND 7 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: ENTEROCOCCUS FAECALIS; SOURCE 3 ORGANISM_TAXID: 226185; SOURCE 4 STRAIN: ATCC 700802 / V583; SOURCE 5 GENE: EF_0722, LIGA; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3) KEYWDS PROTEIN-INHIBITOR COMPLEX, LIGASE-LIGASE INHIBITOR COMPLEX EXPDTA X-RAY DIFFRACTION AUTHOR P.A.BORIACK-SJODIN,D.B.PRINCE REVDAT 4 28-FEB-24 4LH7 1 REMARK REVDAT 3 13-JAN-21 4LH7 1 SOURCE REMARK LINK REVDAT 2 08-JAN-14 4LH7 1 JRNL REVDAT 1 25-DEC-13 4LH7 0 JRNL AUTH K.MURPHY-BENENATO,H.WANG,H.M.MCGUIRE,H.E.DAVIS,N.GAO, JRNL AUTH 2 D.B.PRINCE,H.JAHIC,S.S.STOKES,P.A.BORIACK-SJODIN JRNL TITL IDENTIFICATION THROUGH STRUCTURE-BASED METHODS OF A JRNL TITL 2 BACTERIAL NAD(+)-DEPENDENT DNA LIGASE INHIBITOR THAT AVOIDS JRNL TITL 3 KNOWN RESISTANCE MUTATIONS. JRNL REF BIOORG.MED.CHEM.LETT. V. 24 360 2014 JRNL REFN ISSN 0960-894X JRNL PMID 24287382 JRNL DOI 10.1016/J.BMCL.2013.11.007 REMARK 2 REMARK 2 RESOLUTION. 1.90 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.6.0117 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.90 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 48.99 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 95.7 REMARK 3 NUMBER OF REFLECTIONS : 25480 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.226 REMARK 3 R VALUE (WORKING SET) : 0.225 REMARK 3 FREE R VALUE : 0.259 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.100 REMARK 3 FREE R VALUE TEST SET COUNT : 1369 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 1.90 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 1.95 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1661 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 91.03 REMARK 3 BIN R VALUE (WORKING SET) : 0.2080 REMARK 3 BIN FREE R VALUE SET COUNT : 84 REMARK 3 BIN FREE R VALUE : 0.2430 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 2579 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 40 REMARK 3 SOLVENT ATOMS : 159 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.90 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -0.21000 REMARK 3 B22 (A**2) : -0.05000 REMARK 3 B33 (A**2) : 0.27000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.196 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.169 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.118 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 7.368 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.928 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.909 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 2720 ; 0.006 ; 0.020 REMARK 3 BOND LENGTHS OTHERS (A): 1858 ; 0.001 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 3697 ; 0.992 ; 1.984 REMARK 3 BOND ANGLES OTHERS (DEGREES): 4517 ; 0.761 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 330 ; 5.296 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 140 ;33.498 ;24.357 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 464 ;12.963 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 22 ;12.305 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 396 ; 0.060 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 3071 ; 0.004 ; 0.021 REMARK 3 GENERAL PLANES OTHERS (A): 553 ; 0.001 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED CONTACTS OTHERS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 NON-BONDED TORSION OTHERS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 H-BOND (X...Y) OTHERS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY H-BOND OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 1 REMARK 3 REMARK 3 TLS GROUP : 1 REMARK 3 NUMBER OF COMPONENTS GROUP : 1 REMARK 3 COMPONENTS C SSSEQI TO C SSSEQI REMARK 3 RESIDUE RANGE : A 2 A 322 REMARK 3 ORIGIN FOR THE GROUP (A): 11.5950 38.9110 17.3160 REMARK 3 T TENSOR REMARK 3 T11: 0.0477 T22: 0.0076 REMARK 3 T33: 0.0412 T12: -0.0073 REMARK 3 T13: -0.0084 T23: -0.0002 REMARK 3 L TENSOR REMARK 3 L11: 0.3941 L22: 0.5585 REMARK 3 L33: 0.5674 L12: -0.3556 REMARK 3 L13: 0.1195 L23: -0.1077 REMARK 3 S TENSOR REMARK 3 S11: -0.0001 S12: 0.0083 S13: -0.0835 REMARK 3 S21: -0.0343 S22: 0.0034 S23: 0.0793 REMARK 3 S31: 0.0225 S32: -0.0549 S33: -0.0033 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : BABINET MODEL WITH MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.20 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LH7 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 22-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080625. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 28-OCT-08 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 5.0 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : N REMARK 200 RADIATION SOURCE : ROTATING ANODE REMARK 200 BEAMLINE : NULL REMARK 200 X-RAY GENERATOR MODEL : RIGAKU FR-E+ SUPERBRIGHT REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.5418 REMARK 200 MONOCHROMATOR : NI FILTER REMARK 200 OPTICS : MIRRORS REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : RIGAKU SATURN 944+ REMARK 200 INTENSITY-INTEGRATION SOFTWARE : D*TREK REMARK 200 DATA SCALING SOFTWARE : D*TREK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 26859 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.900 REMARK 200 RESOLUTION RANGE LOW (A) : 48.990 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 95.8 REMARK 200 DATA REDUNDANCY : 4.400 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 9.9000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 1.90 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 1.97 REMARK 200 COMPLETENESS FOR SHELL (%) : 91.7 REMARK 200 DATA REDUNDANCY IN SHELL : 4.50 REMARK 200 R MERGE FOR SHELL (I) : 0.24900 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 4.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: AMORE REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 48.03 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.37 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 26-32% PEG4000, 0.2M AMMONIUM ACETATE, REMARK 280 0.1M SODIUM ACETATE PH 5, VAPOR DIFFUSION, HANGING DROP, REMARK 280 TEMPERATURE 293K, PH 5.0 REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 68.04250 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 68.04250 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 24.41900 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 52.51250 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 24.41900 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 52.51250 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 68.04250 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 24.41900 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 52.51250 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 68.04250 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 24.41900 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 52.51250 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 375 REMARK 375 SPECIAL POSITION REMARK 375 THE FOLLOWING ATOMS ARE FOUND TO BE WITHIN 0.15 ANGSTROMS REMARK 375 OF A SYMMETRY RELATED ATOM AND ARE ASSUMED TO BE ON SPECIAL REMARK 375 POSITIONS. REMARK 375 REMARK 375 ATOM RES CSSEQI REMARK 375 HOH A 571 LIES ON A SPECIAL POSITION. REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 MET A 1 REMARK 465 THR A 323 REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 403 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 ALA A 218 O REMARK 620 2 ARG A 220 O 97.7 REMARK 620 3 HOH A 535 O 159.6 82.5 REMARK 620 4 HOH A 562 O 98.2 80.1 61.6 REMARK 620 5 HOH A 596 O 88.1 165.6 87.5 86.0 REMARK 620 6 HOH A 627 O 102.7 92.1 97.7 158.6 99.5 REMARK 620 N 1 2 3 4 5 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NA A 404 NA REMARK 620 N RES CSSEQI ATOM REMARK 620 1 GLU A 276 O REMARK 620 2 SER A 279 OG 105.2 REMARK 620 3 HOH A 543 O 71.5 81.2 REMARK 620 4 HOH A 587 O 96.5 157.7 101.0 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE 1X8 A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NMN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NA A 404 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LH6 RELATED DB: PDB REMARK 900 INITIAL HIT FROM VIRTUAL SCREEN DBREF 4LH7 A 1 323 UNP Q837V6 DNLJ_ENTFA 1 323 SEQRES 1 A 323 MET GLU GLN GLN PRO LEU THR LEU THR ALA ALA THR THR SEQRES 2 A 323 ARG ALA GLN GLU LEU ARG LYS GLN LEU ASN GLN TYR SER SEQRES 3 A 323 HIS GLU TYR TYR VAL LYS ASP GLN PRO SER VAL GLU ASP SEQRES 4 A 323 TYR VAL TYR ASP ARG LEU TYR LYS GLU LEU VAL ASP ILE SEQRES 5 A 323 GLU THR GLU PHE PRO ASP LEU ILE THR PRO ASP SER PRO SEQRES 6 A 323 THR GLN ARG VAL GLY GLY LYS VAL LEU SER GLY PHE GLU SEQRES 7 A 323 LYS ALA PRO HIS ASP ILE PRO MET TYR SER LEU ASN ASP SEQRES 8 A 323 GLY PHE SER LYS GLU ASP ILE PHE ALA PHE ASP GLU ARG SEQRES 9 A 323 VAL ARG LYS ALA ILE GLY LYS PRO VAL ALA TYR CYS CYS SEQRES 10 A 323 GLU LEU LYS ILE ASP GLY LEU ALA ILE SER LEU ARG TYR SEQRES 11 A 323 GLU ASN GLY VAL PHE VAL ARG GLY ALA THR ARG GLY ASP SEQRES 12 A 323 GLY THR VAL GLY GLU ASN ILE THR GLU ASN LEU ARG THR SEQRES 13 A 323 VAL ARG SER VAL PRO MET ARG LEU THR GLU PRO ILE SER SEQRES 14 A 323 VAL GLU VAL ARG GLY GLU CYS TYR MET PRO LYS GLN SER SEQRES 15 A 323 PHE VAL ALA LEU ASN GLU GLU ARG GLU GLU ASN GLY GLN SEQRES 16 A 323 ASP ILE PHE ALA ASN PRO ARG ASN ALA ALA ALA GLY SER SEQRES 17 A 323 LEU ARG GLN LEU ASP THR LYS ILE VAL ALA LYS ARG ASN SEQRES 18 A 323 LEU ASN THR PHE LEU TYR THR VAL ALA ASP PHE GLY PRO SEQRES 19 A 323 MET LYS ALA LYS THR GLN PHE GLU ALA LEU GLU GLU LEU SEQRES 20 A 323 SER ALA ILE GLY PHE ARG THR ASN PRO GLU ARG GLN LEU SEQRES 21 A 323 CYS GLN SER ILE ASP GLU VAL TRP ALA TYR ILE GLU GLU SEQRES 22 A 323 TYR HIS GLU LYS ARG SER THR LEU PRO TYR GLU ILE ASP SEQRES 23 A 323 GLY ILE VAL ILE LYS VAL ASN GLU PHE ALA LEU GLN ASP SEQRES 24 A 323 GLU LEU GLY PHE THR VAL LYS ALA PRO ARG TRP ALA ILE SEQRES 25 A 323 ALA TYR LYS PHE PRO PRO GLU GLU ALA GLU THR HET 1X8 A 401 16 HET NMN A 402 22 HET NA A 403 1 HET NA A 404 1 HETNAM 1X8 4-AMINOTHIENO[3,2-C]PYRIDINE-2,7-DICARBOXAMIDE HETNAM NMN BETA-NICOTINAMIDE RIBOSE MONOPHOSPHATE HETNAM NA SODIUM ION HETSYN NMN NICOTINAMIDE MONONUCLEOTIDE FORMUL 2 1X8 C9 H8 N4 O2 S FORMUL 3 NMN C11 H16 N2 O8 P 1+ FORMUL 4 NA 2(NA 1+) FORMUL 6 HOH *159(H2 O) HELIX 1 1 THR A 7 VAL A 31 1 25 HELIX 2 2 GLU A 38 PHE A 56 1 19 HELIX 3 3 PRO A 57 ILE A 60 5 4 HELIX 4 4 SER A 64 VAL A 69 5 6 HELIX 5 5 SER A 94 GLY A 110 1 17 HELIX 6 6 ILE A 150 THR A 156 1 7 HELIX 7 7 PRO A 179 GLY A 194 1 16 HELIX 8 8 ASN A 200 ARG A 210 1 11 HELIX 9 9 ASP A 213 ARG A 220 1 8 HELIX 10 10 THR A 239 GLY A 251 1 13 HELIX 11 11 SER A 263 ARG A 278 1 16 HELIX 12 12 SER A 279 LEU A 281 5 3 HELIX 13 13 GLU A 294 GLY A 302 1 9 HELIX 14 14 PRO A 318 GLU A 322 5 5 SHEET 1 A 2 LYS A 79 PRO A 81 0 SHEET 2 A 2 VAL A 146 GLU A 148 -1 O GLY A 147 N ALA A 80 SHEET 1 B 5 ASP A 91 GLY A 92 0 SHEET 2 B 5 ALA A 311 LYS A 315 1 O LYS A 315 N GLY A 92 SHEET 3 B 5 ILE A 285 VAL A 292 -1 N ILE A 288 O TYR A 314 SHEET 4 B 5 TYR A 115 ILE A 121 -1 N CYS A 116 O LYS A 291 SHEET 5 B 5 GLN A 259 CYS A 261 -1 O CYS A 261 N TYR A 115 SHEET 1 C 4 VAL A 134 THR A 140 0 SHEET 2 C 4 LEU A 124 GLU A 131 -1 N ARG A 129 O ARG A 137 SHEET 3 C 4 VAL A 170 TYR A 177 -1 O CYS A 176 N LEU A 124 SHEET 4 C 4 ASN A 223 VAL A 229 -1 O THR A 228 N ARG A 173 LINK O ALA A 218 NA NA A 403 1555 1555 2.45 LINK O ARG A 220 NA NA A 403 1555 1555 2.13 LINK O GLU A 276 NA NA A 404 1555 1555 2.37 LINK OG SER A 279 NA NA A 404 1555 1555 2.39 LINK NA NA A 403 O HOH A 535 1555 1555 2.54 LINK NA NA A 403 O HOH A 562 1555 1555 2.82 LINK NA NA A 403 O HOH A 596 1555 1555 2.19 LINK NA NA A 403 O HOH A 627 1555 1555 2.25 LINK NA NA A 404 O HOH A 543 1555 1555 2.44 LINK NA NA A 404 O HOH A 587 1555 1555 2.41 SITE 1 AC1 9 TYR A 87 LEU A 89 GLU A 118 LEU A 119 SITE 2 AC1 9 LYS A 120 ILE A 121 GLU A 175 TYR A 227 SITE 3 AC1 9 LYS A 291 SITE 1 AC2 13 TYR A 25 SER A 26 TYR A 29 TYR A 30 SITE 2 AC2 13 VAL A 37 ASP A 39 TYR A 42 ASP A 43 SITE 3 AC2 13 ARG A 158 HOH A 554 HOH A 561 HOH A 581 SITE 4 AC2 13 HOH A 634 SITE 1 AC3 6 ALA A 218 ARG A 220 HOH A 535 HOH A 562 SITE 2 AC3 6 HOH A 596 HOH A 627 SITE 1 AC4 4 GLU A 276 SER A 279 HOH A 543 HOH A 587 CRYST1 48.838 105.025 136.085 90.00 90.00 90.00 C 2 2 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.020476 0.000000 0.000000 0.00000 SCALE2 0.000000 0.009522 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007348 0.00000