HEADER PROTEIN TRANSPORT 01-JUL-13 4LHX TITLE CRYSTAL STRUCTURE OF NUCLEOTIDE-FREE RAB8:RABIN8 COMPND MOL_ID: 1; COMPND 2 MOLECULE: RAS-RELATED PROTEIN RAB-8A; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 1-184; COMPND 5 SYNONYM: ONCOGENE C-MEL; COMPND 6 ENGINEERED: YES; COMPND 7 MOL_ID: 2; COMPND 8 MOLECULE: RAB-3A-INTERACTING PROTEIN; COMPND 9 CHAIN: C, D, E, F; COMPND 10 FRAGMENT: UNP RESIDUES 157-232; COMPND 11 SYNONYM: RAB3A-INTERACTING PROTEIN, RABIN-3, SSX2-INTERACTING COMPND 12 PROTEIN; COMPND 13 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: RAB8A, MEL, RAB8; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(RIL)DE3; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: OPINE; SOURCE 11 MOL_ID: 2; SOURCE 12 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 13 ORGANISM_COMMON: HUMAN; SOURCE 14 ORGANISM_TAXID: 9606; SOURCE 15 GENE: RAB3IP, RABIN8; SOURCE 16 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 17 EXPRESSION_SYSTEM_TAXID: 511693; SOURCE 18 EXPRESSION_SYSTEM_STRAIN: BL21(RIL)DE3; SOURCE 19 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 20 EXPRESSION_SYSTEM_PLASMID: PET19 KEYWDS SMALL GTPASE, GUANINE NUCLEOTIDE EXCHANGE FACTOR, PROTEIN TRANSPORT EXPDTA X-RAY DIFFRACTION AUTHOR Z.GUO,X.M.HOU,R.S.GOODY,A.ITZEN REVDAT 3 20-SEP-23 4LHX 1 REMARK SEQADV REVDAT 2 18-DEC-13 4LHX 1 JRNL REVDAT 1 09-OCT-13 4LHX 0 JRNL AUTH Z.GUO,X.HOU,R.S.GOODY,A.ITZEN JRNL TITL INTERMEDIATES IN THE GUANINE NUCLEOTIDE EXCHANGE REACTION OF JRNL TITL 2 RAB8 PROTEIN CATALYZED BY GUANINE NUCLEOTIDE EXCHANGE JRNL TITL 3 FACTORS RABIN8 AND GRAB. JRNL REF J.BIOL.CHEM. V. 288 32466 2013 JRNL REFN ISSN 0021-9258 JRNL PMID 24072714 JRNL DOI 10.1074/JBC.M113.498329 REMARK 2 REMARK 2 RESOLUTION. 3.05 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : REFMAC 5.2.0019 REMARK 3 AUTHORS : MURSHUDOV,SKUBAK,LEBEDEV,PANNU,STEINER, REMARK 3 : NICHOLLS,WINN,LONG,VAGIN REMARK 3 REMARK 3 REFINEMENT TARGET : MAXIMUM LIKELIHOOD REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 3.05 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 19.94 REMARK 3 DATA CUTOFF (SIGMA(F)) : NULL REMARK 3 COMPLETENESS FOR RANGE (%) : 99.2 REMARK 3 NUMBER OF REFLECTIONS : 20544 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 CROSS-VALIDATION METHOD : THROUGHOUT REMARK 3 FREE R VALUE TEST SET SELECTION : RANDOM REMARK 3 R VALUE (WORKING + TEST SET) : 0.265 REMARK 3 R VALUE (WORKING SET) : 0.264 REMARK 3 FREE R VALUE : 0.300 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.000 REMARK 3 FREE R VALUE TEST SET COUNT : 1076 REMARK 3 REMARK 3 FIT IN THE HIGHEST RESOLUTION BIN. REMARK 3 TOTAL NUMBER OF BINS USED : 20 REMARK 3 BIN RESOLUTION RANGE HIGH (A) : 3.05 REMARK 3 BIN RESOLUTION RANGE LOW (A) : 3.13 REMARK 3 REFLECTION IN BIN (WORKING SET) : 1471 REMARK 3 BIN COMPLETENESS (WORKING+TEST) (%) : 98.91 REMARK 3 BIN R VALUE (WORKING SET) : 0.3530 REMARK 3 BIN FREE R VALUE SET COUNT : 76 REMARK 3 BIN FREE R VALUE : 0.3760 REMARK 3 REMARK 3 NUMBER OF NON-HYDROGEN ATOMS USED IN REFINEMENT. REMARK 3 PROTEIN ATOMS : 4735 REMARK 3 NUCLEIC ACID ATOMS : 0 REMARK 3 HETEROGEN ATOMS : 15 REMARK 3 SOLVENT ATOMS : 0 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 94.49 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : 3.25000 REMARK 3 B22 (A**2) : 4.24000 REMARK 3 B33 (A**2) : -7.49000 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 ESTIMATED OVERALL COORDINATE ERROR. REMARK 3 ESU BASED ON R VALUE (A): 0.394 REMARK 3 ESU BASED ON FREE R VALUE (A): 0.449 REMARK 3 ESU BASED ON MAXIMUM LIKELIHOOD (A): 0.000 REMARK 3 ESU FOR B VALUES BASED ON MAXIMUM LIKELIHOOD (A**2): 0.005 REMARK 3 REMARK 3 CORRELATION COEFFICIENTS. REMARK 3 CORRELATION COEFFICIENT FO-FC : 0.908 REMARK 3 CORRELATION COEFFICIENT FO-FC FREE : 0.882 REMARK 3 REMARK 3 RMS DEVIATIONS FROM IDEAL VALUES COUNT RMS WEIGHT REMARK 3 BOND LENGTHS REFINED ATOMS (A): 4820 ; 0.018 ; 0.021 REMARK 3 BOND LENGTHS OTHERS (A): 3152 ; 0.000 ; 0.020 REMARK 3 BOND ANGLES REFINED ATOMS (DEGREES): 6490 ; 1.688 ; 1.958 REMARK 3 BOND ANGLES OTHERS (DEGREES): 7708 ; 4.407 ; 3.000 REMARK 3 TORSION ANGLES, PERIOD 1 (DEGREES): 640 ; 7.795 ; 5.000 REMARK 3 TORSION ANGLES, PERIOD 2 (DEGREES): 205 ;39.719 ;25.024 REMARK 3 TORSION ANGLES, PERIOD 3 (DEGREES): 826 ;23.806 ;15.000 REMARK 3 TORSION ANGLES, PERIOD 4 (DEGREES): 27 ;19.380 ;15.000 REMARK 3 CHIRAL-CENTER RESTRAINTS (A**3): 753 ; 0.080 ; 0.200 REMARK 3 GENERAL PLANES REFINED ATOMS (A): 5489 ; 0.005 ; 0.020 REMARK 3 GENERAL PLANES OTHERS (A): 958 ; 0.005 ; 0.020 REMARK 3 NON-BONDED CONTACTS REFINED ATOMS (A): 1555 ; 0.271 ; 0.200 REMARK 3 NON-BONDED CONTACTS OTHERS (A): 3510 ; 0.238 ; 0.200 REMARK 3 NON-BONDED TORSION REFINED ATOMS (A): 2454 ; 0.205 ; 0.200 REMARK 3 NON-BONDED TORSION OTHERS (A): 2601 ; 0.115 ; 0.200 REMARK 3 H-BOND (X...Y) REFINED ATOMS (A): 206 ; 0.185 ; 0.200 REMARK 3 H-BOND (X...Y) OTHERS (A): 2 ; 0.019 ; 0.200 REMARK 3 POTENTIAL METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 POTENTIAL METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY VDW REFINED ATOMS (A): 31 ; 0.210 ; 0.200 REMARK 3 SYMMETRY VDW OTHERS (A): 37 ; 0.318 ; 0.200 REMARK 3 SYMMETRY H-BOND REFINED ATOMS (A): 3 ; 0.505 ; 0.200 REMARK 3 SYMMETRY H-BOND OTHERS (A): 1 ; 0.316 ; 0.200 REMARK 3 SYMMETRY METAL-ION REFINED ATOMS (A): NULL ; NULL ; NULL REMARK 3 SYMMETRY METAL-ION OTHERS (A): NULL ; NULL ; NULL REMARK 3 REMARK 3 ISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 MAIN-CHAIN BOND REFINED ATOMS (A**2): 3190 ; 1.521 ; 1.500 REMARK 3 MAIN-CHAIN BOND OTHER ATOMS (A**2): 1320 ; 2.093 ; 1.500 REMARK 3 MAIN-CHAIN ANGLE REFINED ATOMS (A**2): 4970 ; 2.666 ; 2.000 REMARK 3 MAIN-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN BOND REFINED ATOMS (A**2): 1630 ; 2.711 ; 3.000 REMARK 3 SIDE-CHAIN BOND OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SIDE-CHAIN ANGLE REFINED ATOMS (A**2): 1520 ; 4.408 ; 4.500 REMARK 3 SIDE-CHAIN ANGLE OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B REFINED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 LONG RANGE B OTHER ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 ANISOTROPIC THERMAL FACTOR RESTRAINTS. COUNT RMS WEIGHT REMARK 3 RIGID-BOND RESTRAINTS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; FREE ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 SPHERICITY; BONDED ATOMS (A**2): NULL ; NULL ; NULL REMARK 3 REMARK 3 NCS RESTRAINTS STATISTICS REMARK 3 NUMBER OF DIFFERENT NCS GROUPS : NULL REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : MASK REMARK 3 PARAMETERS FOR MASK CALCULATION REMARK 3 VDW PROBE RADIUS : 1.40 REMARK 3 ION PROBE RADIUS : 0.80 REMARK 3 SHRINKAGE RADIUS : 0.80 REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: HYDROGENS HAVE BEEN ADDED IN THE RIDING REMARK 3 POSITIONS REMARK 4 REMARK 4 4LHX COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 02-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080651. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 01-MAY-09 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.6 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SLS REMARK 200 BEAMLINE : X10SA REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 1.0000 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : MARMOSAIC 225 MM CCD REMARK 200 INTENSITY-INTEGRATION SOFTWARE : MOSFLM, XDS REMARK 200 DATA SCALING SOFTWARE : SCALEPACK REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 21696 REMARK 200 RESOLUTION RANGE HIGH (A) : 3.050 REMARK 200 RESOLUTION RANGE LOW (A) : 19.900 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 18.070 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.1 REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: 1YZQ REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 65.63 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.58 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 18% (W/V) PEG3350, 0.1 M LI2SO4, 0.1 M REMARK 280 MES. CRYO SOLUTION (30% (W/V) PEG3350, 0.1 M LI2SO4, 0.1 M MES), REMARK 280 PH 6.6, VAPOR DIFFUSION, HANGING DROP, TEMPERATURE 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: C 2 2 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -X,Y,-Z+1/2 REMARK 290 4555 X,-Y,-Z REMARK 290 5555 X+1/2,Y+1/2,Z REMARK 290 6555 -X+1/2,-Y+1/2,Z+1/2 REMARK 290 7555 -X+1/2,Y+1/2,-Z+1/2 REMARK 290 8555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 83.20200 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 83.20200 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 5 1.000000 0.000000 0.000000 40.82250 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 82.65050 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 6 -1.000000 0.000000 0.000000 40.82250 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 82.65050 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 83.20200 REMARK 290 SMTRY1 7 -1.000000 0.000000 0.000000 40.82250 REMARK 290 SMTRY2 7 0.000000 1.000000 0.000000 82.65050 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 83.20200 REMARK 290 SMTRY1 8 1.000000 0.000000 0.000000 40.82250 REMARK 290 SMTRY2 8 0.000000 -1.000000 0.000000 82.65050 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 4440 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 18080 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -58.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, E, F REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: TRIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: TRIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 5100 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 16680 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -75.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: B, C, D REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A -1 REMARK 465 HIS A 0 REMARK 465 MET A 1 REMARK 465 ALA A 2 REMARK 465 GLU A 178 REMARK 465 GLY A 179 REMARK 465 ASN A 180 REMARK 465 SER A 181 REMARK 465 PRO A 182 REMARK 465 GLN A 183 REMARK 465 GLY A 184 REMARK 465 GLY B -1 REMARK 465 HIS B 0 REMARK 465 MET B 1 REMARK 465 ALA B 2 REMARK 465 GLU B 178 REMARK 465 GLY B 179 REMARK 465 ASN B 180 REMARK 465 SER B 181 REMARK 465 PRO B 182 REMARK 465 GLN B 183 REMARK 465 GLY B 184 REMARK 465 GLY C 155 REMARK 465 PRO C 156 REMARK 465 ILE C 229 REMARK 465 ASP C 230 REMARK 465 VAL C 231 REMARK 465 LEU C 232 REMARK 465 GLY D 155 REMARK 465 PRO D 156 REMARK 465 LYS D 228 REMARK 465 ILE D 229 REMARK 465 ASP D 230 REMARK 465 VAL D 231 REMARK 465 LEU D 232 REMARK 465 GLY E 155 REMARK 465 PRO E 156 REMARK 465 GLY F 155 REMARK 465 PRO F 156 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 3 CG CD CE NZ REMARK 470 GLU A 30 CG CD OE1 OE2 REMARK 470 ASP A 31 CG OD1 OD2 REMARK 470 ARG A 56 CG CD NE CZ NH1 NH2 REMARK 470 ARG A 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 172 CG CD CE NZ REMARK 470 LYS B 3 CG CD CE NZ REMARK 470 ARG B 56 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 58 CG CD CE NZ REMARK 470 ARG B 71 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 172 CG CD CE NZ REMARK 470 LYS B 175 CG CD CE NZ REMARK 470 TYR C 158 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU C 159 CG CD OE1 OE2 REMARK 470 ARG C 160 CG CD NE CZ NH1 NH2 REMARK 470 LEU C 161 CG CD1 CD2 REMARK 470 LYS C 162 CG CD CE NZ REMARK 470 GLU C 163 CG CD OE1 OE2 REMARK 470 GLU C 164 CG CD OE1 OE2 REMARK 470 LEU C 165 CG CD1 CD2 REMARK 470 LYS C 167 CG CD CE NZ REMARK 470 GLN C 169 CG CD OE1 NE2 REMARK 470 ARG C 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU C 171 CG CD OE1 OE2 REMARK 470 LEU C 172 CG CD1 CD2 REMARK 470 LYS C 173 CG CD CE NZ REMARK 470 LEU C 174 CG CD1 CD2 REMARK 470 LYS C 175 CG CD CE NZ REMARK 470 ASP C 176 CG OD1 OD2 REMARK 470 GLU C 177 CG CD OE1 OE2 REMARK 470 GLU C 180 CG CD OE1 OE2 REMARK 470 ARG C 181 CG CD NE CZ NH1 NH2 REMARK 470 LYS C 184 CG CD CE NZ REMARK 470 GLU C 219 CG CD OE1 OE2 REMARK 470 GLU C 224 CG CD OE1 OE2 REMARK 470 GLN C 226 CG CD OE1 NE2 REMARK 470 LYS C 228 CG CD CE NZ REMARK 470 TYR D 158 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU D 159 CG CD OE1 OE2 REMARK 470 ARG D 160 CG CD NE CZ NH1 NH2 REMARK 470 LEU D 161 CG CD1 CD2 REMARK 470 LYS D 162 CG CD CE NZ REMARK 470 GLU D 163 CG CD OE1 OE2 REMARK 470 GLU D 164 CG CD OE1 OE2 REMARK 470 LEU D 165 CG CD1 CD2 REMARK 470 LYS D 167 CG CD CE NZ REMARK 470 GLN D 169 CG CD OE1 NE2 REMARK 470 ARG D 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU D 171 CG CD OE1 OE2 REMARK 470 LEU D 172 CG CD1 CD2 REMARK 470 LYS D 173 CG CD CE NZ REMARK 470 LEU D 174 CG CD1 CD2 REMARK 470 LYS D 175 CG CD CE NZ REMARK 470 GLU D 177 CG CD OE1 OE2 REMARK 470 GLU D 180 CG CD OE1 OE2 REMARK 470 ARG D 181 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 184 CG CD CE NZ REMARK 470 ARG D 186 CG CD NE CZ NH1 NH2 REMARK 470 LYS D 220 CG CD CE NZ REMARK 470 LYS D 223 CG CD CE NZ REMARK 470 GLU D 224 CG CD OE1 OE2 REMARK 470 GLN D 226 CG CD OE1 NE2 REMARK 470 TYR E 158 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU E 159 CG CD OE1 OE2 REMARK 470 ARG E 160 CG CD NE CZ NH1 NH2 REMARK 470 LEU E 161 CG CD1 CD2 REMARK 470 LYS E 162 CG CD CE NZ REMARK 470 GLU E 163 CG CD OE1 OE2 REMARK 470 GLU E 164 CG CD OE1 OE2 REMARK 470 LEU E 165 CG CD1 CD2 REMARK 470 GLN E 169 CG CD OE1 NE2 REMARK 470 ARG E 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU E 171 CG CD OE1 OE2 REMARK 470 LEU E 172 CG CD1 CD2 REMARK 470 LYS E 173 CG CD CE NZ REMARK 470 LEU E 174 CG CD1 CD2 REMARK 470 ASP E 176 CG OD1 OD2 REMARK 470 GLU E 177 CG CD OE1 OE2 REMARK 470 ARG E 186 CG CD NE CZ NH1 NH2 REMARK 470 GLN E 188 CG CD OE1 NE2 REMARK 470 GLU E 219 CG CD OE1 OE2 REMARK 470 LYS E 220 CG CD CE NZ REMARK 470 GLN E 221 CG CD OE1 NE2 REMARK 470 LEU E 222 CG CD1 CD2 REMARK 470 LYS E 223 CG CD CE NZ REMARK 470 GLU E 224 CG CD OE1 OE2 REMARK 470 GLN E 226 CG CD OE1 NE2 REMARK 470 LYS E 228 CG CD CE NZ REMARK 470 ILE E 229 CG1 CG2 CD1 REMARK 470 ASP E 230 CG OD1 OD2 REMARK 470 VAL E 231 CG1 CG2 REMARK 470 LEU E 232 CG CD1 CD2 REMARK 470 TYR F 158 CG CD1 CD2 CE1 CE2 CZ OH REMARK 470 GLU F 159 CG CD OE1 OE2 REMARK 470 ARG F 160 CG CD NE CZ NH1 NH2 REMARK 470 LEU F 161 CG CD1 CD2 REMARK 470 LYS F 162 CG CD CE NZ REMARK 470 GLU F 163 CG CD OE1 OE2 REMARK 470 GLU F 164 CG CD OE1 OE2 REMARK 470 LEU F 165 CG CD1 CD2 REMARK 470 GLN F 169 CG CD OE1 NE2 REMARK 470 ARG F 170 CG CD NE CZ NH1 NH2 REMARK 470 GLU F 171 CG CD OE1 OE2 REMARK 470 LEU F 172 CG CD1 CD2 REMARK 470 LYS F 173 CG CD CE NZ REMARK 470 LEU F 174 CG CD1 CD2 REMARK 470 LYS F 175 CG CD CE NZ REMARK 470 ASP F 176 CG OD1 OD2 REMARK 470 GLU F 178 CG CD OE1 OE2 REMARK 470 GLU F 219 CG CD OE1 OE2 REMARK 470 LYS F 220 CG CD CE NZ REMARK 470 LEU F 222 CG CD1 CD2 REMARK 470 LYS F 223 CG CD CE NZ REMARK 470 GLU F 224 CG CD OE1 OE2 REMARK 470 GLN F 226 CG CD OE1 NE2 REMARK 470 LYS F 228 CG CD CE NZ REMARK 470 ILE F 229 CG1 CG2 CD1 REMARK 470 ASP F 230 CG OD1 OD2 REMARK 470 VAL F 231 CG1 CG2 REMARK 470 LEU F 232 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 OD1 ASN A 121 CG2 THR A 150 2.07 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 A 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 201 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE SO4 B 202 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LHV RELATED DB: PDB REMARK 900 RELATED ID: 4LHW RELATED DB: PDB REMARK 900 RELATED ID: 4LHY RELATED DB: PDB REMARK 900 RELATED ID: 4LHZ RELATED DB: PDB REMARK 900 RELATED ID: 4LI0 RELATED DB: PDB DBREF 4LHX A 1 184 UNP P61006 RAB8A_HUMAN 1 184 DBREF 4LHX B 1 184 UNP P61006 RAB8A_HUMAN 1 184 DBREF 4LHX C 157 232 UNP Q96QF0 RAB3I_HUMAN 173 248 DBREF 4LHX D 157 232 UNP Q96QF0 RAB3I_HUMAN 173 248 DBREF 4LHX E 157 232 UNP Q96QF0 RAB3I_HUMAN 173 248 DBREF 4LHX F 157 232 UNP Q96QF0 RAB3I_HUMAN 173 248 SEQADV 4LHX GLY A -1 UNP P61006 EXPRESSION TAG SEQADV 4LHX HIS A 0 UNP P61006 EXPRESSION TAG SEQADV 4LHX GLY B -1 UNP P61006 EXPRESSION TAG SEQADV 4LHX HIS B 0 UNP P61006 EXPRESSION TAG SEQADV 4LHX GLY C 155 UNP Q96QF0 EXPRESSION TAG SEQADV 4LHX PRO C 156 UNP Q96QF0 EXPRESSION TAG SEQADV 4LHX GLY D 155 UNP Q96QF0 EXPRESSION TAG SEQADV 4LHX PRO D 156 UNP Q96QF0 EXPRESSION TAG SEQADV 4LHX GLY E 155 UNP Q96QF0 EXPRESSION TAG SEQADV 4LHX PRO E 156 UNP Q96QF0 EXPRESSION TAG SEQADV 4LHX GLY F 155 UNP Q96QF0 EXPRESSION TAG SEQADV 4LHX PRO F 156 UNP Q96QF0 EXPRESSION TAG SEQRES 1 A 186 GLY HIS MET ALA LYS THR TYR ASP TYR LEU PHE LYS LEU SEQRES 2 A 186 LEU LEU ILE GLY ASP SER GLY VAL GLY LYS THR CYS VAL SEQRES 3 A 186 LEU PHE ARG PHE SER GLU ASP ALA PHE ASN SER THR PHE SEQRES 4 A 186 ILE SER THR ILE GLY ILE ASP PHE LYS ILE ARG THR ILE SEQRES 5 A 186 GLU LEU ASP GLY LYS ARG ILE LYS LEU GLN ILE TRP ASP SEQRES 6 A 186 THR ALA GLY GLN GLU ARG PHE ARG THR ILE THR THR ALA SEQRES 7 A 186 TYR TYR ARG GLY ALA MET GLY ILE MET LEU VAL TYR ASP SEQRES 8 A 186 ILE THR ASN GLU LYS SER PHE ASP ASN ILE ARG ASN TRP SEQRES 9 A 186 ILE ARG ASN ILE GLU GLU HIS ALA SER ALA ASP VAL GLU SEQRES 10 A 186 LYS MET ILE LEU GLY ASN LYS CYS ASP VAL ASN ASP LYS SEQRES 11 A 186 ARG GLN VAL SER LYS GLU ARG GLY GLU LYS LEU ALA LEU SEQRES 12 A 186 ASP TYR GLY ILE LYS PHE MET GLU THR SER ALA LYS ALA SEQRES 13 A 186 ASN ILE ASN VAL GLU ASN ALA PHE PHE THR LEU ALA ARG SEQRES 14 A 186 ASP ILE LYS ALA LYS MET ASP LYS LYS LEU GLU GLY ASN SEQRES 15 A 186 SER PRO GLN GLY SEQRES 1 B 186 GLY HIS MET ALA LYS THR TYR ASP TYR LEU PHE LYS LEU SEQRES 2 B 186 LEU LEU ILE GLY ASP SER GLY VAL GLY LYS THR CYS VAL SEQRES 3 B 186 LEU PHE ARG PHE SER GLU ASP ALA PHE ASN SER THR PHE SEQRES 4 B 186 ILE SER THR ILE GLY ILE ASP PHE LYS ILE ARG THR ILE SEQRES 5 B 186 GLU LEU ASP GLY LYS ARG ILE LYS LEU GLN ILE TRP ASP SEQRES 6 B 186 THR ALA GLY GLN GLU ARG PHE ARG THR ILE THR THR ALA SEQRES 7 B 186 TYR TYR ARG GLY ALA MET GLY ILE MET LEU VAL TYR ASP SEQRES 8 B 186 ILE THR ASN GLU LYS SER PHE ASP ASN ILE ARG ASN TRP SEQRES 9 B 186 ILE ARG ASN ILE GLU GLU HIS ALA SER ALA ASP VAL GLU SEQRES 10 B 186 LYS MET ILE LEU GLY ASN LYS CYS ASP VAL ASN ASP LYS SEQRES 11 B 186 ARG GLN VAL SER LYS GLU ARG GLY GLU LYS LEU ALA LEU SEQRES 12 B 186 ASP TYR GLY ILE LYS PHE MET GLU THR SER ALA LYS ALA SEQRES 13 B 186 ASN ILE ASN VAL GLU ASN ALA PHE PHE THR LEU ALA ARG SEQRES 14 B 186 ASP ILE LYS ALA LYS MET ASP LYS LYS LEU GLU GLY ASN SEQRES 15 B 186 SER PRO GLN GLY SEQRES 1 C 78 GLY PRO GLY TYR GLU ARG LEU LYS GLU GLU LEU ALA LYS SEQRES 2 C 78 ALA GLN ARG GLU LEU LYS LEU LYS ASP GLU GLU CYS GLU SEQRES 3 C 78 ARG LEU SER LYS VAL ARG ASP GLN LEU GLY GLN GLU LEU SEQRES 4 C 78 GLU GLU LEU THR ALA SER LEU PHE GLU GLU ALA HIS LYS SEQRES 5 C 78 MET VAL ARG GLU ALA ASN ILE LYS GLN ALA THR ALA GLU SEQRES 6 C 78 LYS GLN LEU LYS GLU ALA GLN GLY LYS ILE ASP VAL LEU SEQRES 1 D 78 GLY PRO GLY TYR GLU ARG LEU LYS GLU GLU LEU ALA LYS SEQRES 2 D 78 ALA GLN ARG GLU LEU LYS LEU LYS ASP GLU GLU CYS GLU SEQRES 3 D 78 ARG LEU SER LYS VAL ARG ASP GLN LEU GLY GLN GLU LEU SEQRES 4 D 78 GLU GLU LEU THR ALA SER LEU PHE GLU GLU ALA HIS LYS SEQRES 5 D 78 MET VAL ARG GLU ALA ASN ILE LYS GLN ALA THR ALA GLU SEQRES 6 D 78 LYS GLN LEU LYS GLU ALA GLN GLY LYS ILE ASP VAL LEU SEQRES 1 E 78 GLY PRO GLY TYR GLU ARG LEU LYS GLU GLU LEU ALA LYS SEQRES 2 E 78 ALA GLN ARG GLU LEU LYS LEU LYS ASP GLU GLU CYS GLU SEQRES 3 E 78 ARG LEU SER LYS VAL ARG ASP GLN LEU GLY GLN GLU LEU SEQRES 4 E 78 GLU GLU LEU THR ALA SER LEU PHE GLU GLU ALA HIS LYS SEQRES 5 E 78 MET VAL ARG GLU ALA ASN ILE LYS GLN ALA THR ALA GLU SEQRES 6 E 78 LYS GLN LEU LYS GLU ALA GLN GLY LYS ILE ASP VAL LEU SEQRES 1 F 78 GLY PRO GLY TYR GLU ARG LEU LYS GLU GLU LEU ALA LYS SEQRES 2 F 78 ALA GLN ARG GLU LEU LYS LEU LYS ASP GLU GLU CYS GLU SEQRES 3 F 78 ARG LEU SER LYS VAL ARG ASP GLN LEU GLY GLN GLU LEU SEQRES 4 F 78 GLU GLU LEU THR ALA SER LEU PHE GLU GLU ALA HIS LYS SEQRES 5 F 78 MET VAL ARG GLU ALA ASN ILE LYS GLN ALA THR ALA GLU SEQRES 6 F 78 LYS GLN LEU LYS GLU ALA GLN GLY LYS ILE ASP VAL LEU HET SO4 A 201 5 HET SO4 B 201 5 HET SO4 B 202 5 HETNAM SO4 SULFATE ION FORMUL 7 SO4 3(O4 S 2-) HELIX 1 1 GLY A 20 SER A 29 1 10 HELIX 2 2 GLN A 67 ARG A 69 5 3 HELIX 3 3 PHE A 70 GLY A 80 1 11 HELIX 4 4 ASN A 92 ALA A 110 1 19 HELIX 5 5 VAL A 125 ARG A 129 5 5 HELIX 6 6 SER A 132 TYR A 143 1 12 HELIX 7 7 ASN A 157 LYS A 176 1 20 HELIX 8 8 GLY B 20 SER B 29 1 10 HELIX 9 9 GLN B 67 ARG B 69 5 3 HELIX 10 10 PHE B 70 GLY B 80 1 11 HELIX 11 11 ASN B 92 ALA B 110 1 19 HELIX 12 12 VAL B 125 ARG B 129 5 5 HELIX 13 13 SER B 132 GLY B 144 1 13 HELIX 14 14 ASN B 157 LYS B 176 1 20 HELIX 15 15 TYR C 158 LYS C 175 1 18 HELIX 16 16 ASP C 176 LYS C 228 1 53 HELIX 17 17 TYR D 158 GLU D 171 1 14 HELIX 18 18 GLU D 171 GLY D 227 1 57 HELIX 19 19 TYR E 158 VAL E 231 1 74 HELIX 20 20 TYR F 158 GLU F 163 1 6 HELIX 21 21 GLU F 164 LEU F 232 1 69 SHEET 1 A 6 ILE A 43 LEU A 52 0 SHEET 2 A 6 LYS A 55 THR A 64 -1 O ILE A 61 N LYS A 46 SHEET 3 A 6 LEU A 8 ILE A 14 1 N LEU A 11 O GLN A 60 SHEET 4 A 6 GLY A 83 ASP A 89 1 O MET A 85 N LEU A 12 SHEET 5 A 6 GLU A 115 ASN A 121 1 O LEU A 119 N LEU A 86 SHEET 6 A 6 LYS A 146 GLU A 149 1 O MET A 148 N GLY A 120 SHEET 1 B 6 ILE B 43 LEU B 52 0 SHEET 2 B 6 LYS B 55 THR B 64 -1 O ASP B 63 N ASP B 44 SHEET 3 B 6 TYR B 7 GLY B 15 1 N TYR B 7 O LYS B 58 SHEET 4 B 6 GLY B 83 ASP B 89 1 O MET B 85 N LEU B 12 SHEET 5 B 6 GLU B 115 ASN B 121 1 O ASN B 121 N TYR B 88 SHEET 6 B 6 LYS B 146 THR B 150 1 O LYS B 146 N ILE B 118 CISPEP 1 THR A 4 TYR A 5 0 14.62 CISPEP 2 THR B 4 TYR B 5 0 14.62 SITE 1 AC1 7 ASP A 16 SER A 17 GLY A 18 VAL A 19 SITE 2 AC1 7 GLY A 20 LYS A 21 THR A 22 SITE 1 AC2 6 ASP B 16 GLY B 18 VAL B 19 GLY B 20 SITE 2 AC2 6 LYS B 21 THR B 22 SITE 1 AC3 3 ARG A 135 ARG B 100 ARG B 135 CRYST1 81.645 165.301 166.404 90.00 90.00 90.00 C 2 2 21 32 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012248 0.000000 0.000000 0.00000 SCALE2 0.000000 0.006050 0.000000 0.00000 SCALE3 0.000000 0.000000 0.006009 0.00000