HEADER TRANSPORT PROTEIN 05-JUL-13 4LJS TITLE THE CRYSTAL STRUCTURE OF A PERIPLASMIC BINDING PROTEIN FROM TITLE 2 VEILLONELLA PARVULA DSM 2008 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PERIPLASMIC BINDING PROTEIN; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 20-340; COMPND 5 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: VEILLONELLA PARVULA; SOURCE 3 ORGANISM_TAXID: 479436; SOURCE 4 STRAIN: DSM 2008; SOURCE 5 GENE: VPAR_0062; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 469008; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: BL21(DE3)MAGIC; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PMCSG68 KEYWDS STRUCTURAL GENOMICS, PSI-BIOLOGY, PROTEIN STRUCTURE INITIATIVE, KEYWDS 2 MIDWEST CENTER FOR STRUCTURAL GENOMICS, MCSG, TRANSPORT PROTEIN EXPDTA X-RAY DIFFRACTION AUTHOR K.TAN,G.CHHOR,M.ENDRES,A.JOACHIMIAK,MIDWEST CENTER FOR STRUCTURAL AUTHOR 2 GENOMICS (MCSG) REVDAT 2 20-NOV-24 4LJS 1 REMARK SEQADV LINK REVDAT 1 24-JUL-13 4LJS 0 JRNL AUTH K.TAN,G.CHHOR,M.ENDRES,A.JOACHIMIAK JRNL TITL THE CRYSTAL STRUCTURE OF A PERIPLASMIC BINDING PROTEIN FROM JRNL TITL 2 VEILLONELLA PARVULA DSM 2008 JRNL REF TO BE PUBLISHED JRNL REFN REMARK 2 REMARK 2 RESOLUTION. 2.32 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.8.1_1168) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.32 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 30.12 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.340 REMARK 3 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 3 NUMBER OF REFLECTIONS : 18656 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.156 REMARK 3 R VALUE (WORKING SET) : 0.154 REMARK 3 FREE R VALUE : 0.208 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.110 REMARK 3 FREE R VALUE TEST SET COUNT : 953 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 30.1213 - 4.4361 1.00 2568 131 0.1277 0.1641 REMARK 3 2 4.4361 - 3.5228 1.00 2558 124 0.1339 0.1832 REMARK 3 3 3.5228 - 3.0780 1.00 2492 143 0.1758 0.2302 REMARK 3 4 3.0780 - 2.7968 1.00 2545 137 0.1925 0.2946 REMARK 3 5 2.7968 - 2.5964 1.00 2513 131 0.1862 0.2492 REMARK 3 6 2.5964 - 2.4434 1.00 2531 136 0.1807 0.2290 REMARK 3 7 2.4434 - 2.3211 1.00 2496 151 0.1878 0.2543 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.220 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 21.590 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : 42.77 REMARK 3 MEAN B VALUE (OVERALL, A**2) : NULL REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.006 2583 REMARK 3 ANGLE : 0.915 3513 REMARK 3 CHIRALITY : 0.061 394 REMARK 3 PLANARITY : 0.003 454 REMARK 3 DIHEDRAL : 14.184 965 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 8 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 24 THROUGH 91 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.6615 25.4483 21.2532 REMARK 3 T TENSOR REMARK 3 T11: 0.3151 T22: 0.3139 REMARK 3 T33: 0.3277 T12: 0.0259 REMARK 3 T13: -0.0008 T23: -0.0742 REMARK 3 L TENSOR REMARK 3 L11: 4.2534 L22: 3.4034 REMARK 3 L33: 4.5993 L12: 0.2483 REMARK 3 L13: -0.2332 L23: 0.2049 REMARK 3 S TENSOR REMARK 3 S11: -0.0736 S12: -0.0470 S13: 0.0406 REMARK 3 S21: 0.2052 S22: 0.0144 S23: -0.3956 REMARK 3 S31: 0.0887 S32: 0.3349 S33: 0.0665 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 92 THROUGH 119 ) REMARK 3 ORIGIN FOR THE GROUP (A): 25.0073 21.0707 27.2582 REMARK 3 T TENSOR REMARK 3 T11: 0.3310 T22: 0.2880 REMARK 3 T33: 0.1903 T12: -0.0030 REMARK 3 T13: 0.0253 T23: -0.0153 REMARK 3 L TENSOR REMARK 3 L11: 3.5275 L22: 5.5223 REMARK 3 L33: 2.2509 L12: 2.3371 REMARK 3 L13: 0.3331 L23: 0.2315 REMARK 3 S TENSOR REMARK 3 S11: 0.0550 S12: -0.1170 S13: -0.0971 REMARK 3 S21: 0.4157 S22: -0.1608 S23: 0.0477 REMARK 3 S31: 0.3726 S32: -0.0089 S33: 0.0920 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 120 THROUGH 170 ) REMARK 3 ORIGIN FOR THE GROUP (A): 31.9296 32.9919 17.0450 REMARK 3 T TENSOR REMARK 3 T11: 0.2423 T22: 0.2040 REMARK 3 T33: 0.2320 T12: -0.0500 REMARK 3 T13: 0.0346 T23: 0.0211 REMARK 3 L TENSOR REMARK 3 L11: 1.9492 L22: 6.0276 REMARK 3 L33: 7.8988 L12: 0.2793 REMARK 3 L13: 1.2530 L23: 5.6739 REMARK 3 S TENSOR REMARK 3 S11: -0.1304 S12: 0.0808 S13: 0.0974 REMARK 3 S21: -0.2162 S22: 0.0420 S23: -0.1087 REMARK 3 S31: -0.2297 S32: 0.0943 S33: 0.1077 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 171 THROUGH 205 ) REMARK 3 ORIGIN FOR THE GROUP (A): 36.2779 13.2329 8.0030 REMARK 3 T TENSOR REMARK 3 T11: 0.2881 T22: 0.3616 REMARK 3 T33: 0.3690 T12: 0.0618 REMARK 3 T13: 0.0904 T23: -0.0207 REMARK 3 L TENSOR REMARK 3 L11: 2.9976 L22: 3.4525 REMARK 3 L33: 8.3882 L12: 2.6006 REMARK 3 L13: 3.9409 L23: 4.5772 REMARK 3 S TENSOR REMARK 3 S11: 0.0712 S12: 0.0937 S13: -0.3338 REMARK 3 S21: 0.1481 S22: 0.1246 S23: -0.3758 REMARK 3 S31: 0.5109 S32: 0.5055 S33: -0.2487 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 206 THROUGH 248 ) REMARK 3 ORIGIN FOR THE GROUP (A): 15.8246 18.2629 -2.8030 REMARK 3 T TENSOR REMARK 3 T11: 0.3559 T22: 0.3213 REMARK 3 T33: 0.3750 T12: 0.0448 REMARK 3 T13: -0.1092 T23: -0.0781 REMARK 3 L TENSOR REMARK 3 L11: 6.8876 L22: 3.2545 REMARK 3 L33: 3.5882 L12: -0.0527 REMARK 3 L13: -0.4408 L23: -0.1343 REMARK 3 S TENSOR REMARK 3 S11: -0.1986 S12: 0.3878 S13: 0.2592 REMARK 3 S21: -0.6057 S22: -0.2217 S23: 0.8041 REMARK 3 S31: -0.4890 S32: -0.3875 S33: 0.3647 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 249 THROUGH 268 ) REMARK 3 ORIGIN FOR THE GROUP (A): 7.2631 18.1140 -3.3804 REMARK 3 T TENSOR REMARK 3 T11: 0.4993 T22: 0.5433 REMARK 3 T33: 0.9348 T12: 0.1962 REMARK 3 T13: -0.2250 T23: -0.2479 REMARK 3 L TENSOR REMARK 3 L11: 5.7838 L22: 4.8732 REMARK 3 L33: 4.6996 L12: -0.0076 REMARK 3 L13: 1.7592 L23: 0.1017 REMARK 3 S TENSOR REMARK 3 S11: -0.5623 S12: 0.4732 S13: 0.7619 REMARK 3 S21: -1.1597 S22: -0.1157 S23: 1.5532 REMARK 3 S31: -0.9311 S32: -0.7075 S33: 0.5752 REMARK 3 TLS GROUP : 7 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 269 THROUGH 282 ) REMARK 3 ORIGIN FOR THE GROUP (A): 5.9269 16.7442 13.2096 REMARK 3 T TENSOR REMARK 3 T11: 0.5670 T22: 1.0117 REMARK 3 T33: 0.8278 T12: 0.0678 REMARK 3 T13: 0.1546 T23: -0.2916 REMARK 3 L TENSOR REMARK 3 L11: 7.4089 L22: 2.2708 REMARK 3 L33: 5.2318 L12: 1.2007 REMARK 3 L13: 2.3711 L23: 2.1229 REMARK 3 S TENSOR REMARK 3 S11: 0.2716 S12: -1.3876 S13: 0.9157 REMARK 3 S21: 0.5111 S22: -0.4615 S23: 1.1854 REMARK 3 S31: -0.5410 S32: -1.1849 S33: 0.3071 REMARK 3 TLS GROUP : 8 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 283 THROUGH 339 ) REMARK 3 ORIGIN FOR THE GROUP (A): 14.4187 9.9566 4.4485 REMARK 3 T TENSOR REMARK 3 T11: 0.2855 T22: 0.3124 REMARK 3 T33: 0.3861 T12: 0.0208 REMARK 3 T13: 0.0308 T23: -0.1109 REMARK 3 L TENSOR REMARK 3 L11: 3.8286 L22: 3.5885 REMARK 3 L33: 4.6352 L12: 0.2863 REMARK 3 L13: -0.0917 L23: 1.0934 REMARK 3 S TENSOR REMARK 3 S11: -0.1570 S12: -0.0271 S13: -0.2236 REMARK 3 S21: -0.2740 S22: -0.2578 S23: 0.5723 REMARK 3 S31: 0.1395 S32: -0.4989 S33: 0.3196 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LJS COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 11-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080717. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 15-FEB-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 8.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : APS REMARK 200 BEAMLINE : 19-ID REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97929 REMARK 200 MONOCHROMATOR : SI 111 CRYSTAL REMARK 200 OPTICS : MIRROR REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315R REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-3000 REMARK 200 DATA SCALING SOFTWARE : HKL-3000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 18692 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.320 REMARK 200 RESOLUTION RANGE LOW (A) : 30.200 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : -5.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 99.9 REMARK 200 DATA REDUNDANCY : 7.500 REMARK 200 R MERGE (I) : 0.10200 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : 38.3000 REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : 2.32 REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : 2.36 REMARK 200 COMPLETENESS FOR SHELL (%) : 100.0 REMARK 200 DATA REDUNDANCY IN SHELL : 7.60 REMARK 200 R MERGE FOR SHELL (I) : 0.57100 REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : 5.000 REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: SAD REMARK 200 SOFTWARE USED: SHELXD, MLPHARE, HKL-3000, DM REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 58.40 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.96 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.8M POTASSIUM SODIUM TARTRATE, 0.1M REMARK 280 TRIS:HCL, 0.5%(W/V) PEG MME 5000, PH 8.5, VAPOR DIFFUSION, REMARK 280 SITTING DROP, TEMPERATURE 297K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 62 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -Y,X-Y,Z+2/3 REMARK 290 3555 -X+Y,-X,Z+1/3 REMARK 290 4555 -X,-Y,Z REMARK 290 5555 Y,-X+Y,Z+2/3 REMARK 290 6555 X-Y,X,Z+1/3 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 2 0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 73.61267 REMARK 290 SMTRY1 3 -0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 3 -0.866025 -0.500000 0.000000 0.00000 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 36.80633 REMARK 290 SMTRY1 4 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 5 0.500000 0.866025 0.000000 0.00000 REMARK 290 SMTRY2 5 -0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 5 0.000000 0.000000 1.000000 73.61267 REMARK 290 SMTRY1 6 0.500000 -0.866025 0.000000 0.00000 REMARK 290 SMTRY2 6 0.866025 0.500000 0.000000 0.00000 REMARK 290 SMTRY3 6 0.000000 0.000000 1.000000 36.80633 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 300 REMARK: EXPERIMENTALLY UNKNOWN. IT IS PREDICTED TO A MONOMER. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 SER A 17 REMARK 465 ASN A 18 REMARK 465 ALA A 19 REMARK 465 GLN A 20 REMARK 465 GLN A 21 REMARK 465 VAL A 22 REMARK 465 THR A 23 REMARK 465 HIS A 340 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 LYS A 35 CE NZ REMARK 470 LYS A 221 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 TRP A 67 156.76 75.99 REMARK 500 PHE A 134 58.14 -113.92 REMARK 500 MSE A 138 -116.15 -135.71 REMARK 500 GLN A 140 163.54 73.78 REMARK 500 GLN A 286 -166.92 -120.44 REMARK 500 SER A 287 -60.74 -122.16 REMARK 500 ARG A 299 65.02 -111.01 REMARK 500 SER A 310 57.09 37.12 REMARK 500 TYR A 331 73.14 -119.25 REMARK 500 REMARK 500 REMARK: NULL REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE GOL A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE PO4 A 402 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: MCSG-APC100837 RELATED DB: TARGETTRACK DBREF 4LJS A 20 340 UNP D1BQD8 D1BQD8_VEIPT 20 340 SEQADV 4LJS SER A 17 UNP D1BQD8 EXPRESSION TAG SEQADV 4LJS ASN A 18 UNP D1BQD8 EXPRESSION TAG SEQADV 4LJS ALA A 19 UNP D1BQD8 EXPRESSION TAG SEQADV 4LJS SER A 318 UNP D1BQD8 GLY 318 CLONING ARTIFACT SEQRES 1 A 324 SER ASN ALA GLN GLN VAL THR VAL GLU ASP HIS GLN SER SEQRES 2 A 324 THR PRO VAL HIS ILE LYS LEU GLN PRO PRO VAL THR ILE SEQRES 3 A 324 GLU SER PHE VAL ARG ARG GLY GLU PRO PHE GLU SER THR SEQRES 4 A 324 TYR THR ALA VAL PRO GLU ARG VAL VAL ALA MSE TRP GLN SEQRES 5 A 324 ASN SER ILE GLU THR ILE ILE ALA LEU GLY GLU GLY ASP SEQRES 6 A 324 ARG ILE VAL ALA GLY MSE GLY ILE PRO ASP ARG LYS TYR SEQRES 7 A 324 VAL ARG PRO GLU TYR ARG GLU ALA TYR ASP LYS ILE PRO SEQRES 8 A 324 TYR LYS ASP LEU LYS TYR ALA ASN LEU GLU SER VAL LEU SEQRES 9 A 324 MSE MSE LYS PRO ASP LEU LEU VAL GLY TRP LYS SER THR SEQRES 10 A 324 PHE THR ASN LYS MSE LEU GLN THR PRO THR PHE TRP GLN SEQRES 11 A 324 ALA ARG LEU ALA ASN VAL TYR ILE ALA GLU SER SER LEU SEQRES 12 A 324 GLY ALA GLN SER ALA LEU THR MSE ASP MSE GLU TYR LYS SEQRES 13 A 324 TYR ILE ARG ASP LEU GLY ARG ILE PHE ASN ARG ASN MSE SEQRES 14 A 324 GLU ALA GLU ARG LEU ILE GLN GLU MSE GLN GLN SER VAL SEQRES 15 A 324 ALA TYR THR VAL ALA GLN THR ALA HIS GLU LYS PRO PRO SEQRES 16 A 324 LYS ALA LEU PHE ILE GLU VAL GLN GLY LYS HIS PHE ARG SEQRES 17 A 324 LEU TYR GLY HIS LYS THR LEU ALA GLY ASN ILE GLY ALA SEQRES 18 A 324 SER LEU HIS ALA ASP VAL ILE ASP THR GLU THR PRO SER SEQRES 19 A 324 ILE SER MSE GLU ASP VAL VAL GLU GLN ASN PRO ASP VAL SEQRES 20 A 324 ILE PHE LEU ILE VAL SER ASP GLY GLU TYR SER GLN ALA SEQRES 21 A 324 ASP VAL ILE MSE ASN TYR VAL LEU THR GLN SER GLY LEU SEQRES 22 A 324 GLN GLY VAL ASN ALA LEU ARG ASN LYS ARG VAL HIS PHE SEQRES 23 A 324 LEU PRO LEU LEU ALA VAL TYR SER PRO GLY ILE ARG LEU SEQRES 24 A 324 LEU ASP SER ILE ASP ILE VAL SER HIS GLY LEU TYR PRO SEQRES 25 A 324 ASN LEU TYR PRO GLU GLY VAL PRO ASP LEU ILE HIS MODRES 4LJS MSE A 66 MET SELENOMETHIONINE MODRES 4LJS MSE A 87 MET SELENOMETHIONINE MODRES 4LJS MSE A 121 MET SELENOMETHIONINE MODRES 4LJS MSE A 122 MET SELENOMETHIONINE MODRES 4LJS MSE A 138 MET SELENOMETHIONINE MODRES 4LJS MSE A 167 MET SELENOMETHIONINE MODRES 4LJS MSE A 169 MET SELENOMETHIONINE MODRES 4LJS MSE A 185 MET SELENOMETHIONINE MODRES 4LJS MSE A 194 MET SELENOMETHIONINE MODRES 4LJS MSE A 253 MET SELENOMETHIONINE MODRES 4LJS MSE A 280 MET SELENOMETHIONINE HET MSE A 66 8 HET MSE A 87 8 HET MSE A 121 16 HET MSE A 122 8 HET MSE A 138 8 HET MSE A 167 8 HET MSE A 169 8 HET MSE A 185 8 HET MSE A 194 8 HET MSE A 253 8 HET MSE A 280 8 HET GOL A 401 6 HET PO4 A 402 5 HETNAM MSE SELENOMETHIONINE HETNAM GOL GLYCEROL HETNAM PO4 PHOSPHATE ION HETSYN GOL GLYCERIN; PROPANE-1,2,3-TRIOL FORMUL 1 MSE 11(C5 H11 N O2 SE) FORMUL 2 GOL C3 H8 O3 FORMUL 3 PO4 O4 P 3- FORMUL 4 HOH *101(H2 O) HELIX 1 1 TRP A 67 LEU A 77 1 11 HELIX 2 2 GLU A 79 ASP A 81 5 3 HELIX 3 3 ASP A 91 VAL A 95 5 5 HELIX 4 4 ARG A 96 GLU A 98 5 3 HELIX 5 5 TYR A 99 ILE A 106 1 8 HELIX 6 6 ASP A 110 ALA A 114 5 5 HELIX 7 7 ASN A 115 LYS A 123 1 9 HELIX 8 8 TRP A 130 PHE A 134 5 5 HELIX 9 9 THR A 141 ALA A 147 1 7 HELIX 10 10 GLU A 156 LEU A 159 5 4 HELIX 11 11 THR A 166 PHE A 181 1 16 HELIX 12 12 ARG A 183 THR A 205 1 23 HELIX 13 13 THR A 230 LEU A 239 1 10 HELIX 14 14 SER A 252 ASN A 260 1 9 HELIX 15 15 ASP A 270 SER A 274 5 5 HELIX 16 16 GLN A 275 THR A 285 1 11 HELIX 17 17 SER A 287 GLY A 291 5 5 HELIX 18 18 VAL A 292 ASN A 297 1 6 HELIX 19 19 LEU A 306 VAL A 308 5 3 HELIX 20 20 PRO A 311 ILE A 313 5 3 HELIX 21 21 ARG A 314 TYR A 327 1 14 SHEET 1 A 2 LYS A 35 ARG A 47 0 SHEET 2 A 2 GLU A 50 ALA A 58 -1 O TYR A 56 N VAL A 40 SHEET 1 B 4 ILE A 83 MSE A 87 0 SHEET 2 B 4 VAL A 63 MSE A 66 1 N ALA A 65 O ALA A 85 SHEET 3 B 4 LEU A 126 GLY A 129 1 O VAL A 128 N MSE A 66 SHEET 4 B 4 ASN A 151 ILE A 154 1 O TYR A 153 N LEU A 127 SHEET 1 C 3 HIS A 222 LEU A 225 0 SHEET 2 C 3 LYS A 212 GLN A 219 -1 N GLU A 217 O ARG A 224 SHEET 3 C 3 ASP A 242 VAL A 243 1 O ASP A 242 N ALA A 213 SHEET 1 D 4 HIS A 222 LEU A 225 0 SHEET 2 D 4 LYS A 212 GLN A 219 -1 N GLU A 217 O ARG A 224 SHEET 3 D 4 VAL A 263 VAL A 268 1 O PHE A 265 N LEU A 214 SHEET 4 D 4 VAL A 300 PRO A 304 1 O HIS A 301 N LEU A 266 LINK C ALA A 65 N MSE A 66 1555 1555 1.33 LINK C MSE A 66 N TRP A 67 1555 1555 1.33 LINK C GLY A 86 N MSE A 87 1555 1555 1.33 LINK C MSE A 87 N GLY A 88 1555 1555 1.33 LINK C LEU A 120 N AMSE A 121 1555 1555 1.33 LINK C LEU A 120 N BMSE A 121 1555 1555 1.33 LINK C AMSE A 121 N MSE A 122 1555 1555 1.33 LINK C BMSE A 121 N MSE A 122 1555 1555 1.33 LINK C MSE A 122 N LYS A 123 1555 1555 1.33 LINK C LYS A 137 N MSE A 138 1555 1555 1.33 LINK C MSE A 138 N LEU A 139 1555 1555 1.33 LINK C THR A 166 N MSE A 167 1555 1555 1.34 LINK C MSE A 167 N ASP A 168 1555 1555 1.33 LINK C ASP A 168 N MSE A 169 1555 1555 1.33 LINK C MSE A 169 N GLU A 170 1555 1555 1.34 LINK C ASN A 184 N MSE A 185 1555 1555 1.33 LINK C MSE A 185 N GLU A 186 1555 1555 1.33 LINK C GLU A 193 N MSE A 194 1555 1555 1.33 LINK C MSE A 194 N GLN A 195 1555 1555 1.33 LINK C SER A 252 N MSE A 253 1555 1555 1.33 LINK C MSE A 253 N GLU A 254 1555 1555 1.33 LINK C ILE A 279 N MSE A 280 1555 1555 1.33 LINK C MSE A 280 N ASN A 281 1555 1555 1.33 CISPEP 1 GLN A 37 PRO A 38 0 3.54 SITE 1 AC1 4 TRP A 130 LYS A 131 SER A 132 SER A 158 SITE 1 AC2 1 TYR A 200 CRYST1 82.994 82.994 110.419 90.00 90.00 120.00 P 62 6 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.012049 0.006957 0.000000 0.00000 SCALE2 0.000000 0.013913 0.000000 0.00000 SCALE3 0.000000 0.000000 0.009056 0.00000