HEADER HYDROLASE 05-JUL-13 4LK2 TITLE CRYSTAL STRUCTURE OF RNA SPLICING EFFECTOR PRP5 COMPND MOL_ID: 1; COMPND 2 MOLECULE: PRE-MRNA-PROCESSING ATP-DEPENDENT RNA HELICASE PRP5; COMPND 3 CHAIN: A, B; COMPND 4 FRAGMENT: UNP RESIDUES 206-698; COMPND 5 EC: 3.6.4.13; COMPND 6 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: SACCHAROMYCES CEREVISIAE; SOURCE 3 ORGANISM_COMMON: YEAST; SOURCE 4 ORGANISM_TAXID: 559292; SOURCE 5 STRAIN: ATCC 204508 / S288C; SOURCE 6 GENE: PRP5, RNA5, YBR237W, YBR1603; SOURCE 7 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 8 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID KEYWDS PRP5, DEAD BOX FAMILY, RNA SPLICING, HYDROLASE EXPDTA X-RAY DIFFRACTION AUTHOR Z.-M.ZHANG,J.LI,F.YANG,Y.XU,J.ZHOU REVDAT 3 20-MAR-24 4LK2 1 REMARK LINK REVDAT 2 25-DEC-19 4LK2 1 JRNL REVDAT 1 11-DEC-13 4LK2 0 JRNL AUTH Z.M.ZHANG,F.YANG,J.ZHANG,Q.TANG,J.LI,J.GU,J.ZHOU,Y.Z.XU JRNL TITL CRYSTAL STRUCTURE OF PRP5P REVEALS INTERDOMAIN INTERACTIONS JRNL TITL 2 THAT IMPACT SPLICEOSOME ASSEMBLY. JRNL REF CELL REP V. 5 1269 2013 JRNL REFN ESSN 2211-1247 JRNL PMID 24290758 JRNL DOI 10.1016/J.CELREP.2013.10.047 REMARK 2 REMARK 2 RESOLUTION. 2.12 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX (PHENIX.REFINE: 1.6.2_432) REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 2.12 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 38.88 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 0.000 REMARK 3 COMPLETENESS FOR RANGE (%) : 93.1 REMARK 3 NUMBER OF REFLECTIONS : 51501 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.213 REMARK 3 R VALUE (WORKING SET) : 0.212 REMARK 3 FREE R VALUE : 0.255 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 3.390 REMARK 3 FREE R VALUE TEST SET COUNT : 1748 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 38.8873 - 4.5652 0.93 5249 179 0.1985 0.1947 REMARK 3 2 4.5652 - 3.6244 0.95 5161 184 0.1829 0.2219 REMARK 3 3 3.6244 - 3.1665 0.96 5174 179 0.2053 0.2439 REMARK 3 4 3.1665 - 2.8771 0.96 5143 174 0.2155 0.2676 REMARK 3 5 2.8771 - 2.6709 0.95 5007 178 0.2299 0.2980 REMARK 3 6 2.6709 - 2.5135 0.94 5008 174 0.2412 0.3480 REMARK 3 7 2.5135 - 2.3876 0.94 4940 179 0.2431 0.3263 REMARK 3 8 2.3876 - 2.2837 0.91 4837 171 0.2442 0.3415 REMARK 3 9 2.2837 - 2.1958 0.89 4689 164 0.2447 0.3038 REMARK 3 10 2.1958 - 2.1200 0.87 4545 166 0.2621 0.3086 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.20 REMARK 3 SHRINKAGE RADIUS : 0.95 REMARK 3 K_SOL : 0.34 REMARK 3 B_SOL : 45.57 REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.250 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 28.440 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 43.13 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : -5.29730 REMARK 3 B22 (A**2) : 21.93650 REMARK 3 B33 (A**2) : -16.63920 REMARK 3 B12 (A**2) : 0.00000 REMARK 3 B13 (A**2) : 0.00000 REMARK 3 B23 (A**2) : 0.00000 REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.008 6878 REMARK 3 ANGLE : 1.086 9298 REMARK 3 CHIRALITY : 0.073 1116 REMARK 3 PLANARITY : 0.004 1184 REMARK 3 DIHEDRAL : 14.847 2585 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : NULL REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LK2 COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY PDBJ ON 18-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080727. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : NULL REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 6.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : SSRF REMARK 200 BEAMLINE : BL17U REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : NULL REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : CCD REMARK 200 DETECTOR MANUFACTURER : ADSC QUANTUM 315 REMARK 200 INTENSITY-INTEGRATION SOFTWARE : HKL-2000 REMARK 200 DATA SCALING SOFTWARE : HKL-2000 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 59417 REMARK 200 RESOLUTION RANGE HIGH (A) : 2.050 REMARK 200 RESOLUTION RANGE LOW (A) : 50.000 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : NULL REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : NULL REMARK 200 DATA REDUNDANCY : NULL REMARK 200 R MERGE (I) : NULL REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASES REMARK 200 STARTING MODEL: NULL REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 43.53 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 2.18 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 0.1M BIS-TRIS PROPANE, 20% PEG 3350, REMARK 280 0.2M NAF , PH 6.5, VAPOR DIFFUSION, SITTING DROP, TEMPERATURE REMARK 280 293K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 21 21 21 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X+1/2,-Y,Z+1/2 REMARK 290 3555 -X,Y+1/2,-Z+1/2 REMARK 290 4555 X+1/2,-Y+1/2,-Z REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 43.57950 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 63.99400 REMARK 290 SMTRY1 3 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 3 0.000000 1.000000 0.000000 43.04050 REMARK 290 SMTRY3 3 0.000000 0.000000 -1.000000 63.99400 REMARK 290 SMTRY1 4 1.000000 0.000000 0.000000 43.57950 REMARK 290 SMTRY2 4 0.000000 -1.000000 0.000000 43.04050 REMARK 290 SMTRY3 4 0.000000 0.000000 -1.000000 0.00000 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1, 2 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: A REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 350 REMARK 350 BIOMOLECULE: 2 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: MONOMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: MONOMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 APPLY THE FOLLOWING TO CHAINS: B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 TYR A 206 REMARK 465 SER A 207 REMARK 465 PRO A 208 REMARK 465 GLU A 209 REMARK 465 GLU A 272 REMARK 465 ASP A 508 REMARK 465 GLU A 509 REMARK 465 VAL A 510 REMARK 465 GLN A 511 REMARK 465 SER A 512 REMARK 465 GLU A 513 REMARK 465 ASN A 514 REMARK 465 ASP A 515 REMARK 465 GLY A 516 REMARK 465 GLN A 517 REMARK 465 SER A 518 REMARK 465 SER A 519 REMARK 465 ASP A 520 REMARK 465 VAL A 521 REMARK 465 GLU A 522 REMARK 465 GLU A 523 REMARK 465 VAL A 524 REMARK 465 LYS A 672 REMARK 465 LYS A 673 REMARK 465 GLY A 674 REMARK 465 LYS A 675 REMARK 465 PHE A 676 REMARK 465 ARG A 677 REMARK 465 LEU A 678 REMARK 465 SER A 679 REMARK 465 LYS A 680 REMARK 465 GLY A 681 REMARK 465 PHE A 682 REMARK 465 GLY A 683 REMARK 465 GLY A 684 REMARK 465 LYS A 685 REMARK 465 GLY A 686 REMARK 465 LEU A 687 REMARK 465 GLU A 688 REMARK 465 ASN A 689 REMARK 465 ILE A 690 REMARK 465 LYS A 691 REMARK 465 SER A 692 REMARK 465 LYS A 693 REMARK 465 ARG A 694 REMARK 465 GLU A 695 REMARK 465 GLU A 696 REMARK 465 ALA A 697 REMARK 465 GLN A 698 REMARK 465 TYR B 206 REMARK 465 SER B 207 REMARK 465 PRO B 208 REMARK 465 GLU B 209 REMARK 465 GLY B 367 REMARK 465 GLY B 368 REMARK 465 SER B 369 REMARK 465 GLU B 370 REMARK 465 LYS B 472 REMARK 465 PHE B 506 REMARK 465 PHE B 507 REMARK 465 ASP B 508 REMARK 465 GLU B 509 REMARK 465 VAL B 510 REMARK 465 GLN B 511 REMARK 465 SER B 512 REMARK 465 GLU B 513 REMARK 465 ASN B 514 REMARK 465 ASP B 515 REMARK 465 GLY B 516 REMARK 465 GLN B 517 REMARK 465 SER B 518 REMARK 465 SER B 519 REMARK 465 ASP B 520 REMARK 465 VAL B 521 REMARK 465 GLU B 522 REMARK 465 GLU B 523 REMARK 465 ARG B 618 REMARK 465 GLY B 619 REMARK 465 SER B 620 REMARK 465 LYS B 672 REMARK 465 LYS B 673 REMARK 465 GLY B 674 REMARK 465 LYS B 675 REMARK 465 PHE B 676 REMARK 465 ARG B 677 REMARK 465 LEU B 678 REMARK 465 SER B 679 REMARK 465 LYS B 680 REMARK 465 GLY B 681 REMARK 465 PHE B 682 REMARK 465 GLY B 683 REMARK 465 GLY B 684 REMARK 465 LYS B 685 REMARK 465 GLY B 686 REMARK 465 LEU B 687 REMARK 465 GLU B 688 REMARK 465 ASN B 689 REMARK 465 ILE B 690 REMARK 465 LYS B 691 REMARK 465 SER B 692 REMARK 465 LYS B 693 REMARK 465 ARG B 694 REMARK 465 GLU B 695 REMARK 465 GLU B 696 REMARK 465 ALA B 697 REMARK 465 GLN B 698 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 GLU A 210 CG CD OE1 OE2 REMARK 470 LYS A 246 CG CD CE NZ REMARK 470 THR A 264 OG1 CG2 REMARK 470 LEU A 269 CG CD1 CD2 REMARK 470 THR A 271 OG1 CG2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 LEU A 274 CG CD1 CD2 REMARK 470 LYS A 326 CG CD CE NZ REMARK 470 LYS A 372 CG CD CE NZ REMARK 470 LYS A 373 CG CD CE NZ REMARK 470 LYS A 402 CG CD CE NZ REMARK 470 SER A 471 OG REMARK 470 LYS A 472 CG CD CE NZ REMARK 470 PHE A 506 CG CD1 CD2 CE1 CE2 CZ REMARK 470 VAL A 551 CG1 CG2 REMARK 470 LYS A 575 CG CD CE NZ REMARK 470 SER A 620 OG REMARK 470 ARG A 621 CG CD NE CZ NH1 NH2 REMARK 470 GLU A 647 CG CD OE1 OE2 REMARK 470 LYS A 650 CG CD CE NZ REMARK 470 GLU B 210 CG CD OE1 OE2 REMARK 470 GLU B 223 CG CD OE1 OE2 REMARK 470 THR B 264 OG1 CG2 REMARK 470 VAL B 268 CG1 CG2 REMARK 470 LEU B 269 CG CD1 CD2 REMARK 470 THR B 271 OG1 CG2 REMARK 470 GLU B 272 CG CD OE1 OE2 REMARK 470 LYS B 273 CG CD CE NZ REMARK 470 LEU B 274 CG CD1 CD2 REMARK 470 LYS B 326 CG CD CE NZ REMARK 470 ARG B 340 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 372 CG CD CE NZ REMARK 470 ARG B 391 CG CD NE CZ NH1 NH2 REMARK 470 LYS B 407 CG CD CE NZ REMARK 470 LYS B 452 CG CD CE NZ REMARK 470 GLU B 502 CG CD OE1 OE2 REMARK 470 LYS B 543 CG CD CE NZ REMARK 470 LYS B 575 CG CD CE NZ REMARK 470 ARG B 621 CG CD NE CZ NH1 NH2 REMARK 470 GLU B 647 CG CD OE1 OE2 REMARK 470 ILE B 649 CG1 CG2 CD1 REMARK 470 LEU B 655 CG CD1 CD2 REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 LEU A 240 49.59 -95.66 REMARK 500 GLU A 416 56.76 39.90 REMARK 500 SER A 463 58.65 36.05 REMARK 500 ASN A 470 56.28 31.34 REMARK 500 ARG A 618 52.99 -165.85 REMARK 500 LEU B 240 54.17 -94.45 REMARK 500 THR B 271 67.70 -107.27 REMARK 500 GLU B 272 -75.51 172.04 REMARK 500 LYS B 273 33.58 -85.82 REMARK 500 LEU B 274 -37.05 -166.29 REMARK 500 LEU B 398 140.10 -39.96 REMARK 500 SER B 463 59.08 39.17 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 NI A 701 NI REMARK 620 N RES CSSEQI ATOM REMARK 620 1 HIS A 487 NE2 REMARK 620 2 HIS A 631 ND1 118.5 REMARK 620 3 GLU A 659 OE1 130.9 90.4 REMARK 620 N 1 2 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE NI A 701 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LJY RELATED DB: PDB DBREF 4LK2 A 206 698 UNP P21372 PRP5_YEAST 206 698 DBREF 4LK2 B 206 698 UNP P21372 PRP5_YEAST 206 698 SEQRES 1 A 493 TYR SER PRO GLU GLU LEU GLU PRO PHE GLN LYS ASN PHE SEQRES 2 A 493 TYR ILE GLU SER GLU THR VAL SER SER MET SER GLU MET SEQRES 3 A 493 GLU VAL GLU GLU LEU ARG LEU SER LEU ASP ASN ILE LYS SEQRES 4 A 493 ILE LYS GLY THR GLY CYS PRO LYS PRO VAL THR LYS TRP SEQRES 5 A 493 SER GLN LEU GLY LEU SER THR ASP THR MET VAL LEU ILE SEQRES 6 A 493 THR GLU LYS LEU HIS PHE GLY SER LEU THR PRO ILE GLN SEQRES 7 A 493 SER GLN ALA LEU PRO ALA ILE MET SER GLY ARG ASP VAL SEQRES 8 A 493 ILE GLY ILE SER LYS THR GLY SER GLY LYS THR ILE SER SEQRES 9 A 493 TYR LEU LEU PRO LEU LEU ARG GLN VAL LYS ALA GLN ARG SEQRES 10 A 493 PRO LEU SER LYS HIS GLU THR GLY PRO MET GLY LEU ILE SEQRES 11 A 493 LEU ALA PRO THR ARG GLU LEU ALA LEU GLN ILE HIS GLU SEQRES 12 A 493 GLU VAL THR LYS PHE THR GLU ALA ASP THR SER ILE ARG SEQRES 13 A 493 SER VAL CYS CYS THR GLY GLY SER GLU MET LYS LYS GLN SEQRES 14 A 493 ILE THR ASP LEU LYS ARG GLY THR GLU ILE VAL VAL ALA SEQRES 15 A 493 THR PRO GLY ARG PHE ILE ASP ILE LEU THR LEU ASN ASP SEQRES 16 A 493 GLY LYS LEU LEU SER THR LYS ARG ILE THR PHE VAL VAL SEQRES 17 A 493 MET ASP GLU ALA ASP ARG LEU PHE ASP LEU GLY PHE GLU SEQRES 18 A 493 PRO GLN ILE THR GLN ILE MET LYS THR VAL ARG PRO ASP SEQRES 19 A 493 LYS GLN CYS VAL LEU PHE SER ALA THR PHE PRO ASN LYS SEQRES 20 A 493 LEU ARG SER PHE ALA VAL ARG VAL LEU HIS SER PRO ILE SEQRES 21 A 493 SER ILE THR ILE ASN SER LYS GLY MET VAL ASN GLU ASN SEQRES 22 A 493 VAL LYS GLN LYS PHE ARG ILE CYS HIS SER GLU ASP GLU SEQRES 23 A 493 LYS PHE ASP ASN LEU VAL GLN LEU ILE HIS GLU ARG SER SEQRES 24 A 493 GLU PHE PHE ASP GLU VAL GLN SER GLU ASN ASP GLY GLN SEQRES 25 A 493 SER SER ASP VAL GLU GLU VAL ASP ALA LYS ALA ILE ILE SEQRES 26 A 493 PHE VAL SER SER GLN ASN ILE CYS ASP PHE ILE SER LYS SEQRES 27 A 493 LYS LEU LEU ASN ALA GLY ILE VAL THR CYS ALA ILE HIS SEQRES 28 A 493 ALA GLY LYS PRO TYR GLN GLU ARG LEU MET ASN LEU GLU SEQRES 29 A 493 LYS PHE LYS ARG GLU LYS ASN SER ILE LEU LEU CYS THR SEQRES 30 A 493 GLU VAL LEU SER ARG GLY LEU ASN VAL PRO GLU VAL SER SEQRES 31 A 493 LEU VAL ILE ILE TYR ASN ALA VAL LYS THR PHE ALA GLN SEQRES 32 A 493 TYR VAL HIS THR THR GLY ARG THR ALA ARG GLY SER ARG SEQRES 33 A 493 SER GLY THR ALA ILE THR LEU LEU LEU HIS ASP GLU LEU SEQRES 34 A 493 SER GLY ALA TYR ILE LEU SER LYS ALA MET ARG ASP GLU SEQRES 35 A 493 GLU ILE LYS ALA LEU ASP PRO LEU GLN ALA LYS GLU LEU SEQRES 36 A 493 GLN GLU MET SER ALA LYS PHE GLU SER GLY MET LYS LYS SEQRES 37 A 493 GLY LYS PHE ARG LEU SER LYS GLY PHE GLY GLY LYS GLY SEQRES 38 A 493 LEU GLU ASN ILE LYS SER LYS ARG GLU GLU ALA GLN SEQRES 1 B 493 TYR SER PRO GLU GLU LEU GLU PRO PHE GLN LYS ASN PHE SEQRES 2 B 493 TYR ILE GLU SER GLU THR VAL SER SER MET SER GLU MET SEQRES 3 B 493 GLU VAL GLU GLU LEU ARG LEU SER LEU ASP ASN ILE LYS SEQRES 4 B 493 ILE LYS GLY THR GLY CYS PRO LYS PRO VAL THR LYS TRP SEQRES 5 B 493 SER GLN LEU GLY LEU SER THR ASP THR MET VAL LEU ILE SEQRES 6 B 493 THR GLU LYS LEU HIS PHE GLY SER LEU THR PRO ILE GLN SEQRES 7 B 493 SER GLN ALA LEU PRO ALA ILE MET SER GLY ARG ASP VAL SEQRES 8 B 493 ILE GLY ILE SER LYS THR GLY SER GLY LYS THR ILE SER SEQRES 9 B 493 TYR LEU LEU PRO LEU LEU ARG GLN VAL LYS ALA GLN ARG SEQRES 10 B 493 PRO LEU SER LYS HIS GLU THR GLY PRO MET GLY LEU ILE SEQRES 11 B 493 LEU ALA PRO THR ARG GLU LEU ALA LEU GLN ILE HIS GLU SEQRES 12 B 493 GLU VAL THR LYS PHE THR GLU ALA ASP THR SER ILE ARG SEQRES 13 B 493 SER VAL CYS CYS THR GLY GLY SER GLU MET LYS LYS GLN SEQRES 14 B 493 ILE THR ASP LEU LYS ARG GLY THR GLU ILE VAL VAL ALA SEQRES 15 B 493 THR PRO GLY ARG PHE ILE ASP ILE LEU THR LEU ASN ASP SEQRES 16 B 493 GLY LYS LEU LEU SER THR LYS ARG ILE THR PHE VAL VAL SEQRES 17 B 493 MET ASP GLU ALA ASP ARG LEU PHE ASP LEU GLY PHE GLU SEQRES 18 B 493 PRO GLN ILE THR GLN ILE MET LYS THR VAL ARG PRO ASP SEQRES 19 B 493 LYS GLN CYS VAL LEU PHE SER ALA THR PHE PRO ASN LYS SEQRES 20 B 493 LEU ARG SER PHE ALA VAL ARG VAL LEU HIS SER PRO ILE SEQRES 21 B 493 SER ILE THR ILE ASN SER LYS GLY MET VAL ASN GLU ASN SEQRES 22 B 493 VAL LYS GLN LYS PHE ARG ILE CYS HIS SER GLU ASP GLU SEQRES 23 B 493 LYS PHE ASP ASN LEU VAL GLN LEU ILE HIS GLU ARG SER SEQRES 24 B 493 GLU PHE PHE ASP GLU VAL GLN SER GLU ASN ASP GLY GLN SEQRES 25 B 493 SER SER ASP VAL GLU GLU VAL ASP ALA LYS ALA ILE ILE SEQRES 26 B 493 PHE VAL SER SER GLN ASN ILE CYS ASP PHE ILE SER LYS SEQRES 27 B 493 LYS LEU LEU ASN ALA GLY ILE VAL THR CYS ALA ILE HIS SEQRES 28 B 493 ALA GLY LYS PRO TYR GLN GLU ARG LEU MET ASN LEU GLU SEQRES 29 B 493 LYS PHE LYS ARG GLU LYS ASN SER ILE LEU LEU CYS THR SEQRES 30 B 493 GLU VAL LEU SER ARG GLY LEU ASN VAL PRO GLU VAL SER SEQRES 31 B 493 LEU VAL ILE ILE TYR ASN ALA VAL LYS THR PHE ALA GLN SEQRES 32 B 493 TYR VAL HIS THR THR GLY ARG THR ALA ARG GLY SER ARG SEQRES 33 B 493 SER GLY THR ALA ILE THR LEU LEU LEU HIS ASP GLU LEU SEQRES 34 B 493 SER GLY ALA TYR ILE LEU SER LYS ALA MET ARG ASP GLU SEQRES 35 B 493 GLU ILE LYS ALA LEU ASP PRO LEU GLN ALA LYS GLU LEU SEQRES 36 B 493 GLN GLU MET SER ALA LYS PHE GLU SER GLY MET LYS LYS SEQRES 37 B 493 GLY LYS PHE ARG LEU SER LYS GLY PHE GLY GLY LYS GLY SEQRES 38 B 493 LEU GLU ASN ILE LYS SER LYS ARG GLU GLU ALA GLN HET NI A 701 1 HETNAM NI NICKEL (II) ION FORMUL 3 NI NI 2+ FORMUL 4 HOH *237(H2 O) HELIX 1 1 SER A 222 SER A 227 1 6 HELIX 2 2 SER A 229 LEU A 240 1 12 HELIX 3 3 LYS A 256 GLY A 261 5 6 HELIX 4 4 SER A 263 HIS A 275 1 12 HELIX 5 5 THR A 280 SER A 292 1 13 HELIX 6 6 GLY A 305 GLN A 321 1 17 HELIX 7 7 THR A 339 GLU A 355 1 17 HELIX 8 8 GLU A 370 ARG A 380 1 11 HELIX 9 9 THR A 388 LYS A 402 1 15 HELIX 10 10 GLU A 416 LEU A 423 1 8 HELIX 11 11 PHE A 425 THR A 435 1 11 HELIX 12 12 PRO A 450 LEU A 461 1 12 HELIX 13 13 SER A 488 ARG A 503 1 16 HELIX 14 14 SER A 504 PHE A 507 5 4 HELIX 15 15 SER A 534 ALA A 548 1 15 HELIX 16 16 PRO A 560 GLU A 574 1 15 HELIX 17 17 VAL A 584 SER A 586 5 3 HELIX 18 18 THR A 605 GLY A 614 1 10 HELIX 19 19 ARG A 618 SER A 622 5 5 HELIX 20 20 GLU A 633 MET A 644 1 12 HELIX 21 21 ARG A 645 LEU A 652 1 8 HELIX 22 22 ASP A 653 GLY A 670 1 18 HELIX 23 23 SER B 222 SER B 227 1 6 HELIX 24 24 SER B 229 LEU B 240 1 12 HELIX 25 25 LYS B 256 GLY B 261 5 6 HELIX 26 26 SER B 263 THR B 271 1 9 HELIX 27 27 THR B 280 SER B 292 1 13 HELIX 28 28 GLY B 305 ALA B 320 1 16 HELIX 29 29 THR B 339 GLU B 355 1 17 HELIX 30 30 LYS B 372 LYS B 379 1 8 HELIX 31 31 THR B 388 LEU B 396 1 9 HELIX 32 32 THR B 397 LYS B 402 1 6 HELIX 33 33 GLU B 416 LEU B 423 1 8 HELIX 34 34 PHE B 425 VAL B 436 1 12 HELIX 35 35 PRO B 450 LEU B 461 1 12 HELIX 36 36 SER B 488 GLU B 502 1 15 HELIX 37 37 SER B 534 ALA B 548 1 15 HELIX 38 38 PRO B 560 GLU B 574 1 15 HELIX 39 39 VAL B 584 SER B 586 5 3 HELIX 40 40 THR B 605 GLY B 614 1 10 HELIX 41 41 ARG B 615 ALA B 617 5 3 HELIX 42 42 GLU B 633 MET B 644 1 12 HELIX 43 43 ARG B 645 ALA B 651 1 7 HELIX 44 44 ASP B 653 MET B 671 1 19 SHEET 1 A 8 ILE A 243 LYS A 246 0 SHEET 2 A 8 ILE A 465 ILE A 469 -1 O THR A 468 N LYS A 244 SHEET 3 A 8 VAL A 296 ILE A 299 1 N ILE A 299 O ILE A 467 SHEET 4 A 8 GLN A 441 SER A 446 1 O LEU A 444 N GLY A 298 SHEET 5 A 8 PHE A 411 MET A 414 1 N MET A 414 O PHE A 445 SHEET 6 A 8 GLY A 333 LEU A 336 1 N LEU A 336 O VAL A 413 SHEET 7 A 8 ILE A 384 ALA A 387 1 O ALA A 387 N ILE A 335 SHEET 8 A 8 SER A 362 CYS A 365 1 N CYS A 365 O VAL A 386 SHEET 1 B 6 LYS A 480 CYS A 486 0 SHEET 2 B 6 THR A 624 LEU A 630 1 O LEU A 629 N CYS A 486 SHEET 3 B 6 LEU A 596 ILE A 599 1 N VAL A 597 O ILE A 626 SHEET 4 B 6 ALA A 528 VAL A 532 1 N PHE A 531 O ILE A 598 SHEET 5 B 6 ILE A 578 THR A 582 1 O LEU A 579 N ALA A 528 SHEET 6 B 6 CYS A 553 ILE A 555 1 N CYS A 553 O ILE A 578 SHEET 1 C 8 LYS B 244 LYS B 246 0 SHEET 2 C 8 ILE B 465 THR B 468 -1 O THR B 468 N LYS B 244 SHEET 3 C 8 VAL B 296 ILE B 299 1 N ILE B 299 O ILE B 467 SHEET 4 C 8 GLN B 441 SER B 446 1 O LEU B 444 N GLY B 298 SHEET 5 C 8 PHE B 411 MET B 414 1 N VAL B 412 O GLN B 441 SHEET 6 C 8 GLY B 333 LEU B 336 1 N LEU B 334 O PHE B 411 SHEET 7 C 8 ILE B 384 ALA B 387 1 O ALA B 387 N ILE B 335 SHEET 8 C 8 SER B 362 CYS B 365 1 N VAL B 363 O VAL B 386 SHEET 1 D 6 LYS B 480 CYS B 486 0 SHEET 2 D 6 THR B 624 LEU B 630 1 O LEU B 629 N CYS B 486 SHEET 3 D 6 LEU B 596 ILE B 599 1 N VAL B 597 O ILE B 626 SHEET 4 D 6 ALA B 528 VAL B 532 1 N ILE B 529 O ILE B 598 SHEET 5 D 6 ILE B 578 THR B 582 1 O LEU B 579 N ILE B 530 SHEET 6 D 6 CYS B 553 ILE B 555 1 N CYS B 553 O LEU B 580 LINK NE2 HIS A 487 NI NI A 701 1555 1555 2.14 LINK ND1 HIS A 631 NI NI A 701 1555 1555 2.09 LINK OE1 GLU A 659 NI NI A 701 1555 1555 2.07 CISPEP 1 GLY A 330 PRO A 331 0 4.01 CISPEP 2 GLY B 330 PRO B 331 0 6.15 SITE 1 AC1 4 HIS A 462 HIS A 487 HIS A 631 GLU A 659 CRYST1 87.159 86.081 127.988 90.00 90.00 90.00 P 21 21 21 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.011473 0.000000 0.000000 0.00000 SCALE2 0.000000 0.011617 0.000000 0.00000 SCALE3 0.000000 0.000000 0.007813 0.00000