HEADER TRANSFERASE 07-JUL-13 4LKA TITLE CRYSTAL STRUCTURE OF MOZ DOUBLE PHD FINGER HISTONE H3K9AC COMPLEX COMPND MOL_ID: 1; COMPND 2 MOLECULE: HISTONE ACETYLTRANSFERASE KAT6A; COMPND 3 CHAIN: A; COMPND 4 FRAGMENT: UNP RESIDUES 194-323; COMPND 5 SYNONYM: MOZ, YBF2/SAS3, SAS2 AND TIP60 PROTEIN 3, MYST-3, MONOCYTIC COMPND 6 LEUKEMIA ZINC FINGER PROTEIN, RUNT-RELATED TRANSCRIPTION FACTOR- COMPND 7 BINDING PROTEIN 2, ZINC FINGER PROTEIN 220; COMPND 8 EC: 2.3.1.48; COMPND 9 ENGINEERED: YES; COMPND 10 MOL_ID: 2; COMPND 11 MOLECULE: HISTONE H3.1; COMPND 12 CHAIN: B; COMPND 13 FRAGMENT: UNP RESIDUES 2-22; COMPND 14 SYNONYM: HISTONE H3/A, HISTONE H3/B, HISTONE H3/C, HISTONE H3/D, COMPND 15 HISTONE H3/F, HISTONE H3/H, HISTONE H3/I, HISTONE H3/J HISTONE H3/K, COMPND 16 HISTONE H3/L; COMPND 17 ENGINEERED: YES SOURCE MOL_ID: 1; SOURCE 2 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 3 ORGANISM_COMMON: HUMAN; SOURCE 4 ORGANISM_TAXID: 9606; SOURCE 5 GENE: H3FA, HIST1H3A, KAT6A, MOZ, MYST3, RUNXBP2, ZNF220; SOURCE 6 EXPRESSION_SYSTEM: ESCHERICHIA COLI; SOURCE 7 EXPRESSION_SYSTEM_TAXID: 562; SOURCE 8 EXPRESSION_SYSTEM_STRAIN: ROSETTA 2; SOURCE 9 EXPRESSION_SYSTEM_VECTOR_TYPE: PLASMID; SOURCE 10 EXPRESSION_SYSTEM_PLASMID: PET15B; SOURCE 11 MOL_ID: 2; SOURCE 12 SYNTHETIC: YES; SOURCE 13 ORGANISM_SCIENTIFIC: HOMO SAPIENS; SOURCE 14 ORGANISM_COMMON: HUMAN; SOURCE 15 ORGANISM_TAXID: 9606 KEYWDS ZINC FINGER, PLANT HOMEODOMAIN FINGER, DOUBLE PHD FINGER, DPF, KEYWDS 2 HISTONE ACETYLTRANSFERASE, HISTONE H3 TAIL ACETYLATED AT K9, KEYWDS 3 TRANSFERASE EXPDTA X-RAY DIFFRACTION AUTHOR I.DREVENY,S.E.DEEVES,B.YUE,D.M.HEERY REVDAT 4 06-DEC-23 4LKA 1 REMARK REVDAT 3 20-SEP-23 4LKA 1 REMARK SEQADV LINK REVDAT 2 05-FEB-14 4LKA 1 JRNL REVDAT 1 16-OCT-13 4LKA 0 JRNL AUTH I.DREVENY,S.E.DEEVES,J.FULTON,B.YUE,M.MESSMER, JRNL AUTH 2 A.BHATTACHARYA,H.M.COLLINS,D.M.HEERY JRNL TITL THE DOUBLE PHD FINGER DOMAIN OF MOZ/MYST3 INDUCES JRNL TITL 2 ALPHA-HELICAL STRUCTURE OF THE HISTONE H3 TAIL TO FACILITATE JRNL TITL 3 ACETYLATION AND METHYLATION SAMPLING AND MODIFICATION. JRNL REF NUCLEIC ACIDS RES. V. 42 822 2014 JRNL REFN ISSN 0305-1048 JRNL PMID 24150941 JRNL DOI 10.1093/NAR/GKT931 REMARK 2 REMARK 2 RESOLUTION. 1.61 ANGSTROMS. REMARK 3 REMARK 3 REFINEMENT. REMARK 3 PROGRAM : PHENIX 1.8.2_1309 REMARK 3 AUTHORS : PAUL ADAMS,PAVEL AFONINE,VINCENT CHEN,IAN REMARK 3 : DAVIS,KRESHNA GOPAL,RALF GROSSE-KUNSTLEVE, REMARK 3 : LI-WEI HUNG,ROBERT IMMORMINO,TOM IOERGER, REMARK 3 : AIRLIE MCCOY,ERIK MCKEE,NIGEL MORIARTY, REMARK 3 : REETAL PAI,RANDY READ,JANE RICHARDSON, REMARK 3 : DAVID RICHARDSON,TOD ROMO,JIM SACCHETTINI, REMARK 3 : NICHOLAS SAUTER,JACOB SMITH,LAURENT REMARK 3 : STORONI,TOM TERWILLIGER,PETER ZWART REMARK 3 REMARK 3 REFINEMENT TARGET : ML REMARK 3 REMARK 3 DATA USED IN REFINEMENT. REMARK 3 RESOLUTION RANGE HIGH (ANGSTROMS) : 1.61 REMARK 3 RESOLUTION RANGE LOW (ANGSTROMS) : 44.26 REMARK 3 MIN(FOBS/SIGMA_FOBS) : 1.350 REMARK 3 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 3 NUMBER OF REFLECTIONS : 32092 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT. REMARK 3 R VALUE (WORKING + TEST SET) : 0.165 REMARK 3 R VALUE (WORKING SET) : 0.164 REMARK 3 FREE R VALUE : 0.185 REMARK 3 FREE R VALUE TEST SET SIZE (%) : 5.010 REMARK 3 FREE R VALUE TEST SET COUNT : 1607 REMARK 3 REMARK 3 FIT TO DATA USED IN REFINEMENT (IN BINS). REMARK 3 BIN RESOLUTION RANGE COMPL. NWORK NFREE RWORK RFREE REMARK 3 1 44.2721 - 3.5801 1.00 2976 171 0.1517 0.1593 REMARK 3 2 3.5801 - 2.8417 1.00 2821 155 0.1672 0.1776 REMARK 3 3 2.8417 - 2.4826 1.00 2795 145 0.1695 0.2151 REMARK 3 4 2.4826 - 2.2556 1.00 2742 173 0.1612 0.1945 REMARK 3 5 2.2556 - 2.0939 1.00 2749 146 0.1583 0.1831 REMARK 3 6 2.0939 - 1.9705 1.00 2750 140 0.1616 0.1876 REMARK 3 7 1.9705 - 1.8718 1.00 2739 139 0.1716 0.2023 REMARK 3 8 1.8718 - 1.7903 1.00 2740 141 0.1734 0.2243 REMARK 3 9 1.7903 - 1.7214 1.00 2716 141 0.1843 0.2068 REMARK 3 10 1.7214 - 1.6620 1.00 2718 138 0.1921 0.2233 REMARK 3 11 1.6620 - 1.6100 1.00 2739 118 0.2212 0.2902 REMARK 3 REMARK 3 BULK SOLVENT MODELLING. REMARK 3 METHOD USED : FLAT BULK SOLVENT MODEL REMARK 3 SOLVENT RADIUS : 1.11 REMARK 3 SHRINKAGE RADIUS : 0.90 REMARK 3 K_SOL : NULL REMARK 3 B_SOL : NULL REMARK 3 REMARK 3 ERROR ESTIMATES. REMARK 3 COORDINATE ERROR (MAXIMUM-LIKELIHOOD BASED) : 0.140 REMARK 3 PHASE ERROR (DEGREES, MAXIMUM-LIKELIHOOD BASED) : 18.350 REMARK 3 REMARK 3 B VALUES. REMARK 3 FROM WILSON PLOT (A**2) : NULL REMARK 3 MEAN B VALUE (OVERALL, A**2) : 31.75 REMARK 3 OVERALL ANISOTROPIC B VALUE. REMARK 3 B11 (A**2) : NULL REMARK 3 B22 (A**2) : NULL REMARK 3 B33 (A**2) : NULL REMARK 3 B12 (A**2) : NULL REMARK 3 B13 (A**2) : NULL REMARK 3 B23 (A**2) : NULL REMARK 3 REMARK 3 TWINNING INFORMATION. REMARK 3 FRACTION: NULL REMARK 3 OPERATOR: NULL REMARK 3 REMARK 3 DEVIATIONS FROM IDEAL VALUES. REMARK 3 RMSD COUNT REMARK 3 BOND : 0.009 1148 REMARK 3 ANGLE : 1.170 1533 REMARK 3 CHIRALITY : 0.080 165 REMARK 3 PLANARITY : 0.006 205 REMARK 3 DIHEDRAL : 14.908 454 REMARK 3 REMARK 3 TLS DETAILS REMARK 3 NUMBER OF TLS GROUPS : 6 REMARK 3 TLS GROUP : 1 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 190 THROUGH 209 ) REMARK 3 ORIGIN FOR THE GROUP (A): -16.1074 11.7103 -16.5072 REMARK 3 T TENSOR REMARK 3 T11: 0.2534 T22: 0.3518 REMARK 3 T33: 0.3249 T12: -0.1161 REMARK 3 T13: -0.0750 T23: 0.1284 REMARK 3 L TENSOR REMARK 3 L11: 1.8703 L22: 1.4630 REMARK 3 L33: 1.1200 L12: -0.2855 REMARK 3 L13: 0.3927 L23: -0.5296 REMARK 3 S TENSOR REMARK 3 S11: -0.3726 S12: 0.1835 S13: 0.6150 REMARK 3 S21: -0.0387 S22: -0.1159 S23: -0.3916 REMARK 3 S31: -0.3585 S32: 0.5564 S33: 0.4050 REMARK 3 TLS GROUP : 2 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 210 THROUGH 229 ) REMARK 3 ORIGIN FOR THE GROUP (A): -36.0104 12.9567 -16.5564 REMARK 3 T TENSOR REMARK 3 T11: 0.2107 T22: 0.2135 REMARK 3 T33: 0.2515 T12: 0.0270 REMARK 3 T13: -0.0574 T23: -0.0096 REMARK 3 L TENSOR REMARK 3 L11: 3.2513 L22: 2.5137 REMARK 3 L33: 3.8939 L12: -0.0631 REMARK 3 L13: 0.1733 L23: 0.4737 REMARK 3 S TENSOR REMARK 3 S11: -0.2675 S12: -0.2216 S13: 0.2372 REMARK 3 S21: 0.1367 S22: -0.0562 S23: 0.4030 REMARK 3 S31: -0.2688 S32: -0.5778 S33: 0.2629 REMARK 3 TLS GROUP : 3 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 230 THROUGH 274 ) REMARK 3 ORIGIN FOR THE GROUP (A): -21.8312 4.3591 -16.4385 REMARK 3 T TENSOR REMARK 3 T11: 0.1642 T22: 0.1351 REMARK 3 T33: 0.1748 T12: -0.0441 REMARK 3 T13: -0.0241 T23: 0.0459 REMARK 3 L TENSOR REMARK 3 L11: 3.1812 L22: 2.3315 REMARK 3 L33: 3.5729 L12: -0.9694 REMARK 3 L13: 0.6666 L23: -1.2439 REMARK 3 S TENSOR REMARK 3 S11: -0.1062 S12: 0.2233 S13: 0.0327 REMARK 3 S21: -0.0702 S22: -0.0743 S23: -0.1407 REMARK 3 S31: 0.1132 S32: 0.1808 S33: 0.1551 REMARK 3 TLS GROUP : 4 REMARK 3 SELECTION: CHAIN 'A' AND (RESID 275 THROUGH 315) REMARK 3 ORIGIN FOR THE GROUP (A): -16.7274 -7.5731 -10.1060 REMARK 3 T TENSOR REMARK 3 T11: 0.3087 T22: 0.1836 REMARK 3 T33: 0.2343 T12: 0.0050 REMARK 3 T13: -0.0387 T23: 0.0457 REMARK 3 L TENSOR REMARK 3 L11: 3.2723 L22: 2.8002 REMARK 3 L33: 2.3460 L12: -0.9905 REMARK 3 L13: -0.2982 L23: -0.5798 REMARK 3 S TENSOR REMARK 3 S11: 0.1863 S12: -0.0276 S13: -0.4592 REMARK 3 S21: 0.0086 S22: -0.1062 S23: -0.0366 REMARK 3 S31: 0.5919 S32: 0.0665 S33: -0.0714 REMARK 3 TLS GROUP : 5 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 1 THROUGH 7 ) REMARK 3 ORIGIN FOR THE GROUP (A): -25.6919 -6.3480 -16.9826 REMARK 3 T TENSOR REMARK 3 T11: 0.3139 T22: 0.1804 REMARK 3 T33: 0.2866 T12: -0.0620 REMARK 3 T13: -0.0403 T23: 0.0320 REMARK 3 L TENSOR REMARK 3 L11: 4.1627 L22: 1.9477 REMARK 3 L33: 4.5995 L12: 0.0262 REMARK 3 L13: -0.9856 L23: -1.8387 REMARK 3 S TENSOR REMARK 3 S11: 0.0926 S12: -0.0142 S13: -0.4326 REMARK 3 S21: -0.2907 S22: -0.0220 S23: 0.1951 REMARK 3 S31: 0.7987 S32: -0.2027 S33: -0.0988 REMARK 3 TLS GROUP : 6 REMARK 3 SELECTION: CHAIN 'B' AND (RESID 8 THROUGH 12) REMARK 3 ORIGIN FOR THE GROUP (A): -31.5761 -4.1099 -20.6336 REMARK 3 T TENSOR REMARK 3 T11: 0.4304 T22: 0.3475 REMARK 3 T33: 0.4170 T12: -0.0850 REMARK 3 T13: -0.1392 T23: -0.0245 REMARK 3 L TENSOR REMARK 3 L11: 5.0825 L22: 7.6278 REMARK 3 L33: 6.5976 L12: -0.2020 REMARK 3 L13: -2.4483 L23: 2.3024 REMARK 3 S TENSOR REMARK 3 S11: 0.2284 S12: 0.7199 S13: -0.9855 REMARK 3 S21: -0.5726 S22: -0.0971 S23: 1.1667 REMARK 3 S31: 1.0383 S32: -0.4223 S33: -0.0059 REMARK 3 REMARK 3 NCS DETAILS REMARK 3 NUMBER OF NCS GROUPS : NULL REMARK 3 REMARK 3 OTHER REFINEMENT REMARKS: NULL REMARK 4 REMARK 4 4LKA COMPLIES WITH FORMAT V. 3.30, 13-JUL-11 REMARK 100 REMARK 100 THIS ENTRY HAS BEEN PROCESSED BY RCSB ON 16-JUL-13. REMARK 100 THE DEPOSITION ID IS D_1000080735. REMARK 200 REMARK 200 EXPERIMENTAL DETAILS REMARK 200 EXPERIMENT TYPE : X-RAY DIFFRACTION REMARK 200 DATE OF DATA COLLECTION : 23-JUN-13 REMARK 200 TEMPERATURE (KELVIN) : 100 REMARK 200 PH : 7.5 REMARK 200 NUMBER OF CRYSTALS USED : 1 REMARK 200 REMARK 200 SYNCHROTRON (Y/N) : Y REMARK 200 RADIATION SOURCE : ESRF REMARK 200 BEAMLINE : ID29 REMARK 200 X-RAY GENERATOR MODEL : NULL REMARK 200 MONOCHROMATIC OR LAUE (M/L) : M REMARK 200 WAVELENGTH OR RANGE (A) : 0.97372 REMARK 200 MONOCHROMATOR : NULL REMARK 200 OPTICS : NULL REMARK 200 REMARK 200 DETECTOR TYPE : PIXEL REMARK 200 DETECTOR MANUFACTURER : DECTRIS PILATUS 6M REMARK 200 INTENSITY-INTEGRATION SOFTWARE : XDS REMARK 200 DATA SCALING SOFTWARE : SCALA 0.1.27 REMARK 200 REMARK 200 NUMBER OF UNIQUE REFLECTIONS : 32149 REMARK 200 RESOLUTION RANGE HIGH (A) : 1.610 REMARK 200 RESOLUTION RANGE LOW (A) : 48.190 REMARK 200 REJECTION CRITERIA (SIGMA(I)) : 2.000 REMARK 200 REMARK 200 OVERALL. REMARK 200 COMPLETENESS FOR RANGE (%) : 100.0 REMARK 200 DATA REDUNDANCY : 11.00 REMARK 200 R MERGE (I) : 0.07600 REMARK 200 R SYM (I) : NULL REMARK 200 FOR THE DATA SET : NULL REMARK 200 REMARK 200 IN THE HIGHEST RESOLUTION SHELL. REMARK 200 HIGHEST RESOLUTION SHELL, RANGE HIGH (A) : NULL REMARK 200 HIGHEST RESOLUTION SHELL, RANGE LOW (A) : NULL REMARK 200 COMPLETENESS FOR SHELL (%) : NULL REMARK 200 DATA REDUNDANCY IN SHELL : NULL REMARK 200 R MERGE FOR SHELL (I) : NULL REMARK 200 R SYM FOR SHELL (I) : NULL REMARK 200 FOR SHELL : NULL REMARK 200 REMARK 200 DIFFRACTION PROTOCOL: SINGLE WAVELENGTH REMARK 200 METHOD USED TO DETERMINE THE STRUCTURE: MOLECULAR REPLACEMENT REMARK 200 SOFTWARE USED: PHASER REMARK 200 STARTING MODEL: PDB ENTRY 4LK9 REMARK 200 REMARK 200 REMARK: NULL REMARK 280 REMARK 280 CRYSTAL REMARK 280 SOLVENT CONTENT, VS (%): 63.38 REMARK 280 MATTHEWS COEFFICIENT, VM (ANGSTROMS**3/DA): 3.36 REMARK 280 REMARK 280 CRYSTALLIZATION CONDITIONS: 100 MM NA-HEPES, 1.4 M SODIUM CITRATE, REMARK 280 PH 7.5, VAPOR DIFFUSION, TEMPERATURE 283K REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY REMARK 290 SYMMETRY OPERATORS FOR SPACE GROUP: P 43 21 2 REMARK 290 REMARK 290 SYMOP SYMMETRY REMARK 290 NNNMMM OPERATOR REMARK 290 1555 X,Y,Z REMARK 290 2555 -X,-Y,Z+1/2 REMARK 290 3555 -Y+1/2,X+1/2,Z+3/4 REMARK 290 4555 Y+1/2,-X+1/2,Z+1/4 REMARK 290 5555 -X+1/2,Y+1/2,-Z+3/4 REMARK 290 6555 X+1/2,-Y+1/2,-Z+1/4 REMARK 290 7555 Y,X,-Z REMARK 290 8555 -Y,-X,-Z+1/2 REMARK 290 REMARK 290 WHERE NNN -> OPERATOR NUMBER REMARK 290 MMM -> TRANSLATION VECTOR REMARK 290 REMARK 290 CRYSTALLOGRAPHIC SYMMETRY TRANSFORMATIONS REMARK 290 THE FOLLOWING TRANSFORMATIONS OPERATE ON THE ATOM/HETATM REMARK 290 RECORDS IN THIS ENTRY TO PRODUCE CRYSTALLOGRAPHICALLY REMARK 290 RELATED MOLECULES. REMARK 290 SMTRY1 1 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 1 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY3 1 0.000000 0.000000 1.000000 0.00000 REMARK 290 SMTRY1 2 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY2 2 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY3 2 0.000000 0.000000 1.000000 48.18500 REMARK 290 SMTRY1 3 0.000000 -1.000000 0.000000 35.22750 REMARK 290 SMTRY2 3 1.000000 0.000000 0.000000 35.22750 REMARK 290 SMTRY3 3 0.000000 0.000000 1.000000 72.27750 REMARK 290 SMTRY1 4 0.000000 1.000000 0.000000 35.22750 REMARK 290 SMTRY2 4 -1.000000 0.000000 0.000000 35.22750 REMARK 290 SMTRY3 4 0.000000 0.000000 1.000000 24.09250 REMARK 290 SMTRY1 5 -1.000000 0.000000 0.000000 35.22750 REMARK 290 SMTRY2 5 0.000000 1.000000 0.000000 35.22750 REMARK 290 SMTRY3 5 0.000000 0.000000 -1.000000 72.27750 REMARK 290 SMTRY1 6 1.000000 0.000000 0.000000 35.22750 REMARK 290 SMTRY2 6 0.000000 -1.000000 0.000000 35.22750 REMARK 290 SMTRY3 6 0.000000 0.000000 -1.000000 24.09250 REMARK 290 SMTRY1 7 0.000000 1.000000 0.000000 0.00000 REMARK 290 SMTRY2 7 1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 7 0.000000 0.000000 -1.000000 0.00000 REMARK 290 SMTRY1 8 0.000000 -1.000000 0.000000 0.00000 REMARK 290 SMTRY2 8 -1.000000 0.000000 0.000000 0.00000 REMARK 290 SMTRY3 8 0.000000 0.000000 -1.000000 48.18500 REMARK 290 REMARK 290 REMARK: NULL REMARK 300 REMARK 300 BIOMOLECULE: 1 REMARK 300 SEE REMARK 350 FOR THE AUTHOR PROVIDED AND/OR PROGRAM REMARK 300 GENERATED ASSEMBLY INFORMATION FOR THE STRUCTURE IN REMARK 300 THIS ENTRY. THE REMARK MAY ALSO PROVIDE INFORMATION ON REMARK 300 BURIED SURFACE AREA. REMARK 350 REMARK 350 COORDINATES FOR A COMPLETE MULTIMER REPRESENTING THE KNOWN REMARK 350 BIOLOGICALLY SIGNIFICANT OLIGOMERIZATION STATE OF THE REMARK 350 MOLECULE CAN BE GENERATED BY APPLYING BIOMT TRANSFORMATIONS REMARK 350 GIVEN BELOW. BOTH NON-CRYSTALLOGRAPHIC AND REMARK 350 CRYSTALLOGRAPHIC OPERATIONS ARE GIVEN. REMARK 350 REMARK 350 BIOMOLECULE: 1 REMARK 350 AUTHOR DETERMINED BIOLOGICAL UNIT: DIMERIC REMARK 350 SOFTWARE DETERMINED QUATERNARY STRUCTURE: DIMERIC REMARK 350 SOFTWARE USED: PISA REMARK 350 TOTAL BURIED SURFACE AREA: 1360 ANGSTROM**2 REMARK 350 SURFACE AREA OF THE COMPLEX: 8500 ANGSTROM**2 REMARK 350 CHANGE IN SOLVENT FREE ENERGY: -4.0 KCAL/MOL REMARK 350 APPLY THE FOLLOWING TO CHAINS: A, B REMARK 350 BIOMT1 1 1.000000 0.000000 0.000000 0.00000 REMARK 350 BIOMT2 1 0.000000 1.000000 0.000000 0.00000 REMARK 350 BIOMT3 1 0.000000 0.000000 1.000000 0.00000 REMARK 465 REMARK 465 MISSING RESIDUES REMARK 465 THE FOLLOWING RESIDUES WERE NOT LOCATED IN THE REMARK 465 EXPERIMENT. (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN REMARK 465 IDENTIFIER; SSSEQ=SEQUENCE NUMBER; I=INSERTION CODE.) REMARK 465 REMARK 465 M RES C SSSEQI REMARK 465 GLY A 188 REMARK 465 SER A 189 REMARK 465 GLY A 316 REMARK 465 ARG A 317 REMARK 465 LYS A 318 REMARK 465 LEU A 319 REMARK 465 LEU A 320 REMARK 465 GLN A 321 REMARK 465 LYS A 322 REMARK 465 LYS A 323 REMARK 465 GLY B 13 REMARK 465 LYS B 14 REMARK 465 ALA B 15 REMARK 465 PRO B 16 REMARK 465 ARG B 17 REMARK 465 LYS B 18 REMARK 465 GLN B 19 REMARK 465 LEU B 20 REMARK 465 ALA B 21 REMARK 470 REMARK 470 MISSING ATOM REMARK 470 THE FOLLOWING RESIDUES HAVE MISSING ATOMS (M=MODEL NUMBER; REMARK 470 RES=RESIDUE NAME; C=CHAIN IDENTIFIER; SSEQ=SEQUENCE NUMBER; REMARK 470 I=INSERTION CODE): REMARK 470 M RES CSSEQI ATOMS REMARK 470 HIS A 190 CG ND1 CD2 CE1 NE2 REMARK 470 ASP A 199 CG OD1 OD2 REMARK 470 LYS A 273 CG CD CE NZ REMARK 470 ARG A 313 CG CD NE CZ NH1 NH2 REMARK 470 LYS A 315 CG CD CE NZ REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS IN SAME ASYMMETRIC UNIT REMARK 500 REMARK 500 THE FOLLOWING ATOMS ARE IN CLOSE CONTACT. REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI DISTANCE REMARK 500 O VAL A 202 O HOH A 593 2.03 REMARK 500 O HOH A 568 O HOH A 640 2.18 REMARK 500 O HOH A 621 O HOH A 634 2.19 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: CLOSE CONTACTS REMARK 500 REMARK 500 THE FOLLOWING ATOMS THAT ARE RELATED BY CRYSTALLOGRAPHIC REMARK 500 SYMMETRY ARE IN CLOSE CONTACT. AN ATOM LOCATED WITHIN 0.15 REMARK 500 ANGSTROMS OF A SYMMETRY RELATED ATOM IS ASSUMED TO BE ON A REMARK 500 SPECIAL POSITION AND IS, THEREFORE, LISTED IN REMARK 375 REMARK 500 INSTEAD OF REMARK 500. ATOMS WITH NON-BLANK ALTERNATE REMARK 500 LOCATION INDICATORS ARE NOT INCLUDED IN THE CALCULATIONS. REMARK 500 REMARK 500 DISTANCE CUTOFF: REMARK 500 2.2 ANGSTROMS FOR CONTACTS NOT INVOLVING HYDROGEN ATOMS REMARK 500 1.6 ANGSTROMS FOR CONTACTS INVOLVING HYDROGEN ATOMS REMARK 500 REMARK 500 ATM1 RES C SSEQI ATM2 RES C SSEQI SSYMOP DISTANCE REMARK 500 O HOH A 547 O HOH A 639 3454 2.14 REMARK 500 REMARK 500 REMARK: NULL REMARK 500 REMARK 500 GEOMETRY AND STEREOCHEMISTRY REMARK 500 SUBTOPIC: TORSION ANGLES REMARK 500 REMARK 500 TORSION ANGLES OUTSIDE THE EXPECTED RAMACHANDRAN REGIONS: REMARK 500 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 500 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE). REMARK 500 REMARK 500 STANDARD TABLE: REMARK 500 FORMAT:(10X,I3,1X,A3,1X,A1,I4,A1,4X,F7.2,3X,F7.2) REMARK 500 REMARK 500 EXPECTED VALUES: GJ KLEYWEGT AND TA JONES (1996). PHI/PSI- REMARK 500 CHOLOGY: RAMACHANDRAN REVISITED. STRUCTURE 4, 1395 - 1400 REMARK 500 REMARK 500 M RES CSSEQI PSI PHI REMARK 500 PRO A 207 30.72 -83.96 REMARK 500 ASN A 219 -165.95 -79.94 REMARK 500 GLU A 225 119.86 -163.98 REMARK 500 REMARK 500 REMARK: NULL REMARK 620 REMARK 620 METAL COORDINATION REMARK 620 (M=MODEL NUMBER; RES=RESIDUE NAME; C=CHAIN IDENTIFIER; REMARK 620 SSEQ=SEQUENCE NUMBER; I=INSERTION CODE): REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 403 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 209 SG REMARK 620 2 CYS A 212 SG 112.0 REMARK 620 3 HIS A 238 ND1 100.8 97.9 REMARK 620 4 CYS A 241 SG 111.5 114.5 118.8 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 404 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 230 SG REMARK 620 2 CYS A 233 SG 112.4 REMARK 620 3 CYS A 259 SG 110.1 114.4 REMARK 620 4 CYS A 262 SG 105.8 108.9 104.6 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 402 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 265 SG REMARK 620 2 CYS A 268 SG 109.2 REMARK 620 3 HIS A 289 ND1 99.7 97.1 REMARK 620 4 CYS A 292 SG 113.6 116.9 118.0 REMARK 620 N 1 2 3 REMARK 620 REMARK 620 COORDINATION ANGLES FOR: M RES CSSEQI METAL REMARK 620 ZN A 401 ZN REMARK 620 N RES CSSEQI ATOM REMARK 620 1 CYS A 281 SG REMARK 620 2 CYS A 284 SG 105.5 REMARK 620 3 CYS A 307 SG 112.9 110.9 REMARK 620 4 CYS A 310 SG 111.4 106.1 109.9 REMARK 620 N 1 2 3 REMARK 800 REMARK 800 SITE REMARK 800 SITE_IDENTIFIER: AC1 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 401 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC2 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 402 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC3 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 403 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC4 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR RESIDUE ZN A 404 REMARK 800 REMARK 800 SITE_IDENTIFIER: AC5 REMARK 800 EVIDENCE_CODE: SOFTWARE REMARK 800 SITE_DESCRIPTION: BINDING SITE FOR CHAIN B OF HISTONE H3.1 REMARK 900 REMARK 900 RELATED ENTRIES REMARK 900 RELATED ID: 4LJN RELATED DB: PDB REMARK 900 RELATED ID: 4LK9 RELATED DB: PDB REMARK 900 RELATED ID: 4LLB RELATED DB: PDB DBREF 4LKA A 194 323 UNP Q92794 KAT6A_HUMAN 194 323 DBREF 4LKA B 1 21 UNP P68431 H31_HUMAN 2 22 SEQADV 4LKA GLY A 188 UNP Q92794 EXPRESSION TAG SEQADV 4LKA SER A 189 UNP Q92794 EXPRESSION TAG SEQADV 4LKA HIS A 190 UNP Q92794 EXPRESSION TAG SEQADV 4LKA MET A 191 UNP Q92794 EXPRESSION TAG SEQADV 4LKA LEU A 192 UNP Q92794 EXPRESSION TAG SEQADV 4LKA GLU A 193 UNP Q92794 EXPRESSION TAG SEQRES 1 A 136 GLY SER HIS MET LEU GLU LEU PRO HIS GLU LYS ASP LYS SEQRES 2 A 136 PRO VAL ALA GLU PRO ILE PRO ILE CYS SER PHE CYS LEU SEQRES 3 A 136 GLY THR LYS GLU GLN ASN ARG GLU LYS LYS PRO GLU GLU SEQRES 4 A 136 LEU ILE SER CYS ALA ASP CYS GLY ASN SER GLY HIS PRO SEQRES 5 A 136 SER CYS LEU LYS PHE SER PRO GLU LEU THR VAL ARG VAL SEQRES 6 A 136 LYS ALA LEU ARG TRP GLN CYS ILE GLU CYS LYS THR CYS SEQRES 7 A 136 SER SER CYS ARG ASP GLN GLY LYS ASN ALA ASP ASN MET SEQRES 8 A 136 LEU PHE CYS ASP SER CYS ASP ARG GLY PHE HIS MET GLU SEQRES 9 A 136 CYS CYS ASP PRO PRO LEU THR ARG MET PRO LYS GLY MET SEQRES 10 A 136 TRP ILE CYS GLN ILE CYS ARG PRO ARG LYS LYS GLY ARG SEQRES 11 A 136 LYS LEU LEU GLN LYS LYS SEQRES 1 B 21 ALA ARG THR LYS GLN THR ALA ARG ALY SER THR GLY GLY SEQRES 2 B 21 LYS ALA PRO ARG LYS GLN LEU ALA MODRES 4LKA ALY B 9 LYS N(6)-ACETYLLYSINE HET ALY B 9 12 HET ZN A 401 1 HET ZN A 402 1 HET ZN A 403 1 HET ZN A 404 1 HETNAM ALY N(6)-ACETYLLYSINE HETNAM ZN ZINC ION FORMUL 2 ALY C8 H16 N2 O3 FORMUL 3 ZN 4(ZN 2+) FORMUL 7 HOH *152(H2 O) HELIX 1 1 HIS A 238 LYS A 243 1 6 HELIX 2 2 SER A 245 ALA A 254 1 10 HELIX 3 3 ASN A 274 ASP A 276 5 3 HELIX 4 4 GLU A 291 CYS A 293 5 3 HELIX 5 5 LYS B 4 GLY B 12 1 9 SHEET 1 A 2 ILE A 228 SER A 229 0 SHEET 2 A 2 SER A 236 GLY A 237 -1 O GLY A 237 N ILE A 228 SHEET 1 B 3 GLY A 287 HIS A 289 0 SHEET 2 B 3 MET A 278 PHE A 280 -1 N LEU A 279 O PHE A 288 SHEET 3 B 3 ARG B 2 THR B 3 -1 O ARG B 2 N PHE A 280 LINK C ARG B 8 N ALY B 9 1555 1555 1.33 LINK C ALY B 9 N SER B 10 1555 1555 1.33 LINK SG CYS A 209 ZN ZN A 403 1555 1555 2.33 LINK SG CYS A 212 ZN ZN A 403 1555 1555 2.29 LINK SG CYS A 230 ZN ZN A 404 1555 1555 2.37 LINK SG CYS A 233 ZN ZN A 404 1555 1555 2.25 LINK ND1 HIS A 238 ZN ZN A 403 1555 1555 2.11 LINK SG CYS A 241 ZN ZN A 403 1555 1555 2.28 LINK SG CYS A 259 ZN ZN A 404 1555 1555 2.30 LINK SG CYS A 262 ZN ZN A 404 1555 1555 2.32 LINK SG CYS A 265 ZN ZN A 402 1555 1555 2.35 LINK SG CYS A 268 ZN ZN A 402 1555 1555 2.31 LINK SG CYS A 281 ZN ZN A 401 1555 1555 2.33 LINK SG CYS A 284 ZN ZN A 401 1555 1555 2.28 LINK ND1 HIS A 289 ZN ZN A 402 1555 1555 2.06 LINK SG CYS A 292 ZN ZN A 402 1555 1555 2.23 LINK SG CYS A 307 ZN ZN A 401 1555 1555 2.29 LINK SG CYS A 310 ZN ZN A 401 1555 1555 2.36 CISPEP 1 ASP A 294 PRO A 295 0 1.44 SITE 1 AC1 4 CYS A 281 CYS A 284 CYS A 307 CYS A 310 SITE 1 AC2 4 CYS A 265 CYS A 268 HIS A 289 CYS A 292 SITE 1 AC3 4 CYS A 209 CYS A 212 HIS A 238 CYS A 241 SITE 1 AC4 4 CYS A 230 CYS A 233 CYS A 259 CYS A 262 SITE 1 AC5 27 PHE A 211 CYS A 241 LEU A 242 LYS A 243 SITE 2 AC5 27 ILE A 260 GLU A 261 LYS A 263 GLN A 271 SITE 3 AC5 27 ALA A 275 ASP A 276 MET A 278 LEU A 279 SITE 4 AC5 27 PHE A 280 CYS A 281 ASP A 282 ASP A 285 SITE 5 AC5 27 MET A 300 GLY A 303 HOH A 511 HOH A 545 SITE 6 AC5 27 HOH B 102 HOH B 103 HOH B 104 HOH B 105 SITE 7 AC5 27 HOH B 106 HOH B 107 HOH B 110 CRYST1 70.455 70.455 96.370 90.00 90.00 90.00 P 43 21 2 8 ORIGX1 1.000000 0.000000 0.000000 0.00000 ORIGX2 0.000000 1.000000 0.000000 0.00000 ORIGX3 0.000000 0.000000 1.000000 0.00000 SCALE1 0.014193 0.000000 0.000000 0.00000 SCALE2 0.000000 0.014193 0.000000 0.00000 SCALE3 0.000000 0.000000 0.010377 0.00000